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1,000 results • Page
4 of 20
Sort: Rank
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Votes
Replies
6
votes
7
replies
1.1k
views
Forum:
Generic avatars, not gravatars?
technical
avatar
2.1 years ago by
Michael
54k
5
votes
0
replies
2.9k
views
Forum:
Correct method of Merging/Integrating multiple single cell dataset using Seurat
seurat
scrnaseq
2.1 years ago by
rohitsatyam102
▴ 860
0
votes
0
replies
544
views
Forum:
Phylogenomics in the presence of gene flow
hybridisation
introgression
gene-flow
Phylogenomics
2.2 years ago by
jeronimocid93
• 0
2
votes
2
replies
1.0k
views
Forum:
Bioinformatician Jobs: Remote Flexible is possible?
remote-jobs
bioinformatician
updated 23 months ago by
Ram
43k • written 2.2 years ago by
Marcela
▴ 20
15
votes
11
replies
4.7k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 12 months ago by
Ram
43k • written 2.2 years ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
482
views
Forum:
CIRCexplorer2 - Getting Count Matrix
CIRCexplorer2
counts
circRNA
2.2 years ago by
akamonto
• 0
3
votes
5
replies
1.0k
views
Forum:
1000 genomes data?
DNA
1000genomes
variation
updated 2.2 years ago by
Ram
43k • written 2.2 years ago by
datanerd
▴ 520
0
votes
0
replies
531
views
Forum:
What kind of analysis automation or pipeline is most needed in genomic data analysis right now?
dna
genome
analysis
programming
statistics
updated 2.2 years ago by
ATpoint
82k • written 2.2 years ago by
d
• 0
29
votes
10
replies
6.5k
views
10 follow
Forum:
Interesting/useful/beautiful bio sequence viz tools
viz
python
visualisation
updated 14 months ago by
Ram
43k • written 6.2 years ago by
Joe
21k
3
votes
6
replies
2.2k
views
Forum:
A Css For Small Screen Devices?
meta
updated 14 months ago by
Ram
43k • written 12.1 years ago by
14134125465346445
★ 3.6k
12
votes
6
replies
2.9k
views
Forum:
M.S. Bioinformatics and Computational Biology: Will I be able to find a job after graduation? I'm worried...
career
Masters
Graduation
updated 23 months ago by
Ram
43k • written 2.2 years ago by
CMPanda
▴ 20
0
votes
3
replies
937
views
Forum:
Project Topics on bioinformatic
Data-analysis
Coding
Molecular-biology
updated 12 months ago by
Ram
43k • written 2.2 years ago by
Abdullahi
• 0
0
votes
4
replies
1.3k
views
Forum:
Declining multithreading Diamond performance on decent dual AMD Epyc 7643 server
diamond
performance
EPYC
7643
multithreading
AMD
poor
updated 2.2 years ago by
GenoMax
142k • written 2.2 years ago by
Balazs Horvath
▴ 10
3
votes
1
reply
929
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 12 weeks ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 860
3
votes
4
replies
2.6k
views
Forum:
Bioinformatics Research Topics/Areas that Everyone should take a look / Current Trends
research-area
postgraduates
updated 15 months ago by
Ram
43k • written 2.3 years ago by
pfee418
▴ 10
1
vote
0
replies
559
views
Forum:
Continue exploring Bioinformatics and improving Bioinformatics Skills
postgraduate
bioinformatics-skills
updated 15 months ago by
Ram
43k • written 2.3 years ago by
pfee418
▴ 10
0
votes
1
reply
778
views
Forum:
ensemble VEP server is down
VEP
ensemble
updated 2.3 years ago by
ATpoint
82k • written 2.3 years ago by
Jiji
• 0
15
votes
10
replies
2.0k
views
7 follow
Forum:
Tips and tricks to improve data visualization in bioinformatics
visualization
ggplot2
plot
updated 2.3 years ago by
Mensur Dlakic
★ 27k • written 2.3 years ago by
Papyrus
★ 2.9k
3
votes
8
replies
1.6k
views
Forum:
What are the pain points of using Genomics on the cloud today?
datasharing
pipelines
workspaces
cloud
genomics
updated 2.3 years ago by
Jeremy Leipzig
22k • written 2.3 years ago by
datanerd
▴ 520
0
votes
0
replies
562
views
Forum:
UniProt survey about programmatic access
documentation
api
survey
uniprot
updated 2.3 years ago by
Pierre Lindenbaum
161k • written 2.3 years ago by
Elisabeth Gasteiger
★ 2.4k
4
votes
9
replies
3.1k
views
Forum:
100% variance explained on one PC in DESeq2 PCA?
RNA-Seq
DESeq2
2.3 years ago by
melatoninixo
▴ 10
17
votes
14
replies
3.3k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 11 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
649
views
Forum:
Statistical methods Books Recommendation
Books
Recommendation
updated 2.3 years ago by
ATpoint
82k • written 2.3 years ago by
GK1610
▴ 110
0
votes
0
replies
477
views
Forum:
Is there any limitation for number of samples in AUC analysis ?
curves
ROC
2.3 years ago by
sabaghianamir70
▴ 70
6
votes
5
replies
4.0k
views
6 follow
Forum:
How is the job outlook in 2020 ?
career
outlook
updated 23 months ago by
Ram
43k • written 5.9 years ago by
plus.zer090
• 0
6
votes
5
replies
1.2k
views
6 follow
Forum:
Usability of depiction of individual reads in genome browser visualization
visualization
browser
genome
updated 2.3 years ago by
Istvan Albert
100k • written 2.3 years ago by
massa.kassa.sc3na
▴ 600
4
votes
7
replies
1.8k
views
Forum:
Data Base management system for data lake: Cassandra vs MongoDB vs Apache HBase
HBase
Cassandra
MongoDB
Data-Lake
updated 2.3 years ago by
Carambakaracho
★ 3.2k • written 2.3 years ago by
ResearchR
▴ 120
9
votes
8
replies
5.2k
views
9 follow
Forum:
insert figure and code in the post of Biostars?
meta
biostars
updated 14 months ago by
Ram
43k • written 8.9 years ago by
Zhilong Jia
★ 2.2k
7
votes
2
replies
1.6k
views
Forum:
What are the most influential Bioinformatics/Computational Biology papers/methods/discoveries of 2021?
snp
papers
survey
updated 15 months ago by
Ram
43k • written 2.4 years ago by
Raony Guimarães
★ 1.4k
0
votes
1
reply
776
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by
Ram
43k • written 2.4 years ago by
carlopecoraro2
★ 2.5k
24
votes
11
replies
4.2k
views
7 follow
Forum:
In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby
perl
updated 2.4 years ago by
Juke34
8.6k • written 2.4 years ago by
narendra75
• 0
0
votes
4
replies
872
views
Forum:
Terms (like atlas, map, and archive) on database description
database
2.4 years ago by
bioinformaticsBoy
▴ 10
2
votes
2
replies
804
views
Forum:
How much are companies willing to pay for microbiome data?
NGS
metagenomics
microbiome
2.4 years ago by
maa4618
• 0
19
votes
1
reply
4.5k
views
Forum:
Best programming language for bioinformatics - R Language
programming
R
updated 14 months ago by
ATpoint
82k • written 3.2 years ago by
Novogene
▴ 420
6
votes
7
replies
1.4k
views
Forum:
How to change my email address
meta
biostars
updated 2.4 years ago by
XiBon
• 0 • written 3.2 years ago by
Bosberg
▴ 50
9
votes
11
replies
3.4k
views
6 follow
Forum:
2021: state and usage of compressed file standards better than BAM and FASTQ
bam
compression
fastq
updated 22 months ago by
quentin54520
▴ 120 • written 3.0 years ago by
William
★ 5.3k
10
votes
3
replies
4.7k
views
Forum:
Trimming tools - your experience please?
trimming
updated 2.5 years ago by
i.sudbery
19k • written 2.5 years ago by
paigemiller
▴ 20
8
votes
9
replies
1.8k
views
Forum:
Most useful public genomic/genetic databases/tools/applications
public-data
genomics
Genetics
open-access
updated 15 months ago by
Ram
43k • written 2.5 years ago by
datanerd
▴ 520
74
votes
14
replies
30k
views
12 follow
Forum:
Bioinformatics Consulting Thoughts
consulting
updated 23 months ago by
Ram
43k • written 13.9 years ago by
Will
4.5k
6
votes
3
replies
1.2k
views
Forum:
Computational Biology Conference
biology
computational
science
research
conference
updated 2.5 years ago by
WouterDeCoster
47k • written 2.5 years ago by
Marco Pannone
▴ 790
0
votes
1
reply
737
views
Forum:
UK supercomputer Cambridge-1 vs SDSC vs TACC
SDSC
TACC
HPC
Cambridge-1
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
Shicheng Guo
★ 9.4k
0
votes
1
reply
725
views
Forum:
Official/centralized/designated genetic/biological knowledge graph?
knowledge
graph
updated 2.5 years ago by
Carlo Yague
8.7k • written 2.5 years ago by
Victor
• 0
0
votes
0
replies
546
views
Forum:
Targeted sequencing and phylogenetics
SC
sequencing
exome
gene_panel
updated 15 months ago by
Ram
43k • written 2.5 years ago by
Bioda
• 0
2
votes
7
replies
3.1k
views
Forum:
M1 Pro/Max and future
Max
M1
M2
Pro
Mac
updated 2.5 years ago by
GenoMax
142k • written 2.5 years ago by
fredhstein
▴ 20
21
votes
8
replies
7.6k
views
Forum:
Is there ever a good reason to use a log transformation instead of Box-Cox?
data
skew
transformation
power
updated 2.5 years ago by
Istvan Albert
100k • written 2.5 years ago by
Mensur Dlakic
★ 27k
6
votes
2
replies
793
views
Forum:
Biology undergraduate looking for mentor
computational-biology
Biology
mentor
Toronto
updated 2.5 years ago by
Ram
43k • written 2.5 years ago by
Blcksrvl
• 0
1
vote
7
replies
1.4k
views
Forum:
Does it matter where I get my PhD? I am currently a masters student.
advice
PhD
Masters
2.5 years ago by
nickroseae
▴ 10
16
votes
7
replies
2.0k
views
Forum:
Will a user #100000 get Tesla Model 3?
milestone
updated 2.6 years ago by
Istvan Albert
100k • written 2.6 years ago by
Mensur Dlakic
★ 27k
2
votes
8
replies
1.9k
views
Forum:
Non biology & computer professional interested in bioinformatics
computer-science
machine-learning
updated 15 months ago by
Ram
43k • written 2.6 years ago by
ASU
• 0
0
votes
0
replies
649
views
Forum:
PhD Bioinformatics Remote positions
PhD
updated 23 months ago by
Ram
43k • written 2.6 years ago by
fernandogs97
▴ 30
1,000 results • Page
4 of 20
Recent Votes
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
A: Filtering of VCF, INFO DP or FORMAT DP
What is the difference between GRCh37 and hs37? And hg19?
Answer: Duplicated sequence samtools
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Answer: Filtering based on alternate allelic balance
by
Arton
• 0
I found the answer when using bcftools. Is there is a way to do this with FilterVcf? bcftools filter --include '(FMT/AD[0:1])/(FMT/A…
Comment: Help with IGV abbreviation
by
GenoMax
142k
Those are SAM format fields. Check section 1.4 here: https://samtools.github.io/hts-specs/SAMv1.pdf > 1:2114:12111:13792 That is part of …
Answer: Help with IGV abbreviation
by
Mathew
▴ 120
Hi, here is a breakdown of each part that you asked about: **flag 99**: This indicates various properties of the read alignment. In this c…
Comment: Kraken2 database
by
Mathew
▴ 120
I don't see any databases with just pathogenic bacteria genomes from just a quick search, I would imagine that using the Standard-16 databa…
Comment: Galaxy StringTie error
by
Mathew
▴ 120
I am not sure if this is true for Galaxy, but when I code in Python, SyntaxWarning: invalid escape sequence '' occurs when you want to add …
Comment: Can diamond prepdb be used to make a taxonomically aware database?
by
GenoMax
142k
Should be possible: https://www.biostars.org/p/430366/ Are you using an older version of `diamond`? Latest versions of `diamond` can use N…
Comment: SNPEff database building error
by
Fungal genetics
• 0
Hi, Below SNPEff database building error I am getting. "FATAL ERROR: Most Exons do not have sequences!" The headers are correct and sam…
Comment: Extracting named fasta sequences according to list with Biopython
by
Rubayetul
• 0
the last line of SeqIO.write(record.....'fasta') in a for loop will input the the last record into new fasta file and it will only contain …
Comment: How to process Bulk WES data?
by
GenoMax
142k
You could use `sarek` (nf-core's exome pipeline) if you don't want to customize or reinvent : https://nf-co.re/sarek/3.4.2
Comment: Empty .best and .sing2 Files After Running Demuxlet
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Answer: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last plac
by
David Langenberger
11k
Two last seats have just become available. Apply now, if you want them.
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
GenoMax
142k
You always need to add the following option when you are using `-p` to count paired-end reads. --countReadPairs If specified, fragm…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴ 150
Hi swbarnes2, that was the problem, they were not numeric but as character columns. converted them and it fixed the error. Thank you for yo…
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Prawesh
• 0
I figured out: Since featureCounts counts fragments and not reads, we have pair-end data that means **Assigned** value from the output w…
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴ 190
> My question is this: "mate reverse strand" (flag 16/0x10) or "read reverse strand" (flag 32/0x20) do not directly relate to the strandedn…
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