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1,000 results • Page
4 of 20
Sort: Votes
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Views
Votes
Replies
9
votes
13
replies
2.9k
views
qRT-PCR data analysis steps and workflow
qRT-PCR
Reference genes
Normalization
DeltaCt
FC
5.2 years ago by
mohammedtoufiq91
▴ 250
9
votes
6
replies
3.1k
views
Bug in JellyFish and DSK k-mer counting tool?
dsk
jellyfish
k-mer
7.5 years ago by
scchess
▴ 640
9
votes
5
replies
1.2k
views
how to retrieve all proteins related to cancer
proteins
8.0 years ago by
Learner
▴ 280
9
votes
7
replies
3.3k
views
Aligning Miseq With Deletions >10 Bases
alignment
miseq
next-gen
updated 10.8 years ago by
Biostar
20 • written 11.3 years ago by
Leszek
4.2k
9
votes
7
replies
2.8k
views
Averaging duplicates of a gene in RNA-Seq dataset
expression
differential
average
R
rna-seq
updated 2.8 years ago by
biomon
▴ 60 • written 2.9 years ago by
mohammedtoufiq91
▴ 250
9
votes
7
replies
3.8k
views
7 follow
Are 2 replicates per sample sufficient for RNA-seq data analysis?
RNA-Seq
R
Ngs
6.2 years ago by
Arindam Ghosh
▴ 510
9
votes
5
replies
5.3k
views
Binning of reads vs. binning of contigs in metagenomics
Binning
Metagenomics
5.5 years ago by
vijinim
▴ 100
9
votes
13
replies
15k
views
GC Content of Fasta file --- Python Help
sequence
7.2 years ago by
Patrick Brennan
▴ 50
9
votes
7
replies
1.3k
views
Reference genome location
reference
positions
FASTA
alignment
genome
updated 16 months ago by
barslmn
★ 2.1k • written 16 months ago by
Batel
• 0
9
votes
11
replies
6.6k
views
microRNA Illumina Sequencing - Very low alignment rate
sequencing
Assembly
RNA-Seq
updated 2.3 years ago by
Ram
43k • written 9.8 years ago by
wynstep
▴ 90
9
votes
9
replies
4.7k
views
ATAC-seq TSS profile plot interpretation
ATAC-seq
TSS
V-plot
4.5 years ago by
nanoide
▴ 120
9
votes
8
replies
1.7k
views
Union of unaligned fastq reads
RNA-Seq
6.9 years ago by
Jeffin Rockey
★ 1.3k
9
votes
7
replies
1.2k
views
ChIP-seq; investigate binding within region of tRNA genes
tRNA
ChIP
nf-core
ChIP-seq
updated 24 months ago by
Ram
43k • written 2.1 years ago by
2138493o
▴ 20
9
votes
7
replies
2.2k
views
Sorting BLAST output files together?
blast
8.0 years ago by
zgayk
▴ 90
9
votes
20
replies
4.3k
views
Solve SAM issues flagged by Picard's ValidateSamFile
Picard
SAM
updated 13 months ago by
Ram
43k • written 5.8 years ago by
marongiu.luigi
▴ 710
9
votes
4
replies
1.7k
views
On which branch in bioinformatics should a cancer researcher focus on ?
cancer
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Bilal
▴ 60
9
votes
6
replies
1.4k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
9
votes
7
replies
5.6k
views
fisher test with multiple samples
statistics
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
juncheng
▴ 220
9
votes
3
replies
7.2k
views
Statistical Distributions In Rna-Seq Data Analysis
statistics
rna
updated 5.2 years ago by
Biostar
20 • written 12.1 years ago by
Ngsnewbie
▴ 380
9
votes
5
replies
520
views
Annotation of Complex Heatmap
complexheatmap
3 months ago by
abiuma
▴ 30
9
votes
11
replies
1.5k
views
6 follow
Split up excel cell into multiple records
excel
byonic
6.8 years ago by
rshipman
▴ 30
9
votes
2
replies
593
views
Answer needed urgently
Deep
updated 20 months ago by
Mensur Dlakic
★ 27k • written 20 months ago by
Deepak
• 0
9
votes
13
replies
2.0k
views
Archeological DNA sample - how to analyze
unmapped
paleogenomics
archeogenomics
Assembly
2.3 years ago by
Aruna
▴ 30
9
votes
5
replies
3.8k
views
Which bias flags to run with Salmon before DESeq2 analysis?
RNA-Seq
Salmon
DESeq2
Bias Flags
4.9 years ago by
cameron.holman
▴ 20
9
votes
13
replies
1.6k
views
SNP's and Gene?
SNP
gene
4.6 years ago by
imgapgenomika
▴ 10
8
votes
9
replies
1.5k
views
6 follow
Featurecount is 0 while TPM is 6289.54
TPM
Count
Feature
2.4 years ago by
zhangmeng21
▴ 10
8
votes
7
replies
1.6k
views
Splitting the overall RNA-seq data
RNA-Seq
6.9 years ago by
aeserrano
▴ 40
8
votes
7
replies
1.3k
views
grep with -f switch is not working
grep
updated 4.5 years ago by
zx8754
11k • written 4.5 years ago by
3335098459
▴ 30
8
votes
7
replies
1.1k
views
Why does Ensembl VEP provide HGVSg for some variants and not others?
vcf
VEP
11 months ago by
Jeremy Leipzig
22k
8
votes
13
replies
1.7k
views
Mapped reads not mapping to a real sequence?
bam
sam
samtools
kallisto
15 months ago by
txema.heredia
▴ 110
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by
Dunois
★ 2.5k • written 2.9 years ago by
joe_genome
▴ 40
8
votes
1
reply
1.2k
views
CalculateGenotypePosteriors: A USER ERROR has occurred: Invalid argument ' '.
CalculateGenotypePosteriors
gatk
trio
ped
3.3 years ago by
DareDevil
★ 4.3k
8
votes
14
replies
2.4k
views
6 follow
Definition of "=" in comparing two genes
sequencing
gene
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
rdorey
• 0
8
votes
8
replies
1.6k
views
Clustering DNA sequences (from human genome)
sequencing
genome
4.6 years ago by
abdul.karim
• 0
8
votes
14
replies
6.0k
views
Error in BWA-MEM running in linux
RNA-Seq
BWA-MEM
alignment
updated 6.0 years ago by
GenoMax
142k • written 6.0 years ago by
modarzi
▴ 170
8
votes
17
replies
4.0k
views
Getting nan value in vcftool relatedness command?
vcftools
relatedness
6.3 years ago by
Sharon
▴ 610
8
votes
1
reply
8.6k
views
Correlation heatmaps: use correlation as clustering distance or not?
heatmap
RNA-Seq
clustering
5.1 years ago by
CuriousGuy
▴ 90
8
votes
3
replies
1.2k
views
Package installation error using Bioconda
antismash
Bioconda
17 months ago by
A_heath
▴ 160
8
votes
9
replies
3.0k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq
duplication
fastqc
updated 23 months ago by
rohitsatyam102
▴ 860 • written 4.5 years ago by
Eric Lim
★ 2.1k
8
votes
4
replies
2.3k
views
Implementing a naive javascript-based de Bruijn graph
debruijn
graph
javascript
algorithm
8.0 years ago by
Pierre Lindenbaum
161k
8
votes
20
replies
3.0k
views
Why does cufflinks split this transcript?
RNA-Seq
cufflinks
assembly
6.3 years ago by
corend
▴ 70
8
votes
7
replies
4.3k
views
ORF finder script
orf
open reading frame
bash
shell
sequencing
7.3 years ago by
ahm3dhany
▴ 20
8
votes
12
replies
4.3k
views
Use BLAST Command Line Applications to run a folder of many sequences against a database
BLAST
updated 14 months ago by
Ram
43k • written 2.8 years ago by
daver.v
▴ 30
8
votes
7
replies
6.9k
views
I got low overall alignment rate running HiSAT2
RNA-Seq
hisat
hisat2
alignment
7.7 years ago by
sslee1015
• 0
8
votes
8
replies
1.9k
views
Sequence alignment algorithm for big size genes in MATLAB
alignment
Matlab
next-gen
7.0 years ago by
r.tor
▴ 50
8
votes
11
replies
5.8k
views
RNASeq gender identification
RNA-Seq
6.7 years ago by
popayekid55
▴ 110
8
votes
4
replies
2.4k
views
Global Sequence Alignment
alignment
11.0 years ago by
behrang
• 0
8
votes
7
replies
594
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 3 months ago by
Ram
43k • written 3 months ago by
synat.keam
▴ 100
8
votes
25
replies
3.1k
views
construction of a database
sql
noSQL
neo4j
database
updated 13 months ago by
Ram
43k • written 3.0 years ago by
Debut
▴ 20
8
votes
5
replies
3.2k
views
7 follow
What is the best way to merge multiple fasta files containing contigs?
Assembly
Anvi’o
fasta
updated 5.3 years ago by
zx8754
11k • written 5.3 years ago by
anastasia.gs17
• 0
1,000 results • Page
4 of 20
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Comment: Galaxy StringTie error
by
trkfs
• 0
Hi, I did not encounter any " \ - " characters in the fastq input files, and it doesn't seem to be present in any other files either. Thank…
Comment: How to interpret infinite odds ratio?
by
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• 0
Thanks you for your answer. But according that links interpretation of inf odds ratio is up to hypothesis of the researcher.So my solution …
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Not found in https://ftp.sanger.ac.uk/resources/software/gwava/ ![][1] [1]: /media/images/f69695ec-e047-44f6-95ce-cd4edf1c
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by
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35k
If you're not tied to Granges, you could use `bedmap --fraction-both 0.1` to require at least 10% overlap between reference and map regions…
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By doing some online search, I tried installing one module `cpan Bio::DB::Fasta` and it is running like a never-ending installation process…
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That is not what the logs above tell, but good you solved it.
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Hi, I kind of did and kind of didn't: I stopped trying to use snakemake( I remember that it's a lot of hustle to install pickard, maybe you…
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Hi, you can add the labels outside chart using `geom_label_repel` from `ggrepel` package. Check out this guide [https://r-charts.com/part…
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