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121,625 results • Page
590 of 2433
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
683
views
How to generate feature Data(fData)
Cicero
scATAC-seq
4.0 years ago by
bill
• 0
4
votes
3
replies
2.9k
views
Creating a variation graph for Giraffe alignment from assemblies
vg
vgteam
updated 4.0 years ago by
Jouni Sirén
▴ 710 • written 4.0 years ago by
Michael
▴ 30
1
vote
2
replies
1.7k
views
Advice on organizing large GSVA heatmap
rnaseq
gsva
heatmap
4.0 years ago by
Morgan S.
▴ 90
5
votes
3
replies
1.6k
views
proportion of variance
variance
gene
SNP
updated 4.0 years ago by
LauferVA
4.8k • written 4.0 years ago by
khatami.mahshid
▴ 30
0
votes
0
replies
1.5k
views
Tutorial:
Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge
kallisto
rnaseq
sleuth
4.0 years ago by
mo
• 0
0
votes
1
reply
1.0k
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 3.6 years ago by
bookorg
▴ 20 • written 4.0 years ago by
avelarbio46
▴ 30
1
vote
12
replies
5.5k
views
7 follow
Error when trying to import GTF files using rtracklayer's import function
annotation
rtracklayer
software error
4.0 years ago by
Marcel
• 0
1
vote
1
reply
2.7k
views
PYMOL: Output Polar Contacts Between Chains to Text File
PyMol
Python
updated 4.0 years ago by
Ram
45k • written 4.0 years ago by
berkyalcinkaya55
▴ 10
1
vote
0
replies
657
views
integrative multiomic data
analysis
multiomics
integrative
4.0 years ago by
rob.costa1234
▴ 310
0
votes
5
replies
1.6k
views
Inquiry related to vcf file and formatting
vcf
bcftools
updated 2.4 years ago by
Ram
45k • written 4.0 years ago by
rheab1230
▴ 140
0
votes
0
replies
635
views
Difference in alignment length between FASTA and HitTable
FASTA
BLAST
4.0 years ago by
Leah F
• 0
2
votes
2
replies
2.5k
views
Is subtelomeric region and pericentromeric region defined in human genome?
genome
human
pericentromeric
subtelomeric
updated 4.0 years ago by
Yoann Pageaud
• 0 • written 7.9 years ago by
Boboboe
▴ 40
2
votes
1
reply
778
views
blastpgp -b parameter?
blast
updated 4.0 years ago by
Mensur Dlakic
★ 29k • written 4.0 years ago by
Xylanaser
▴ 80
0
votes
3
replies
1.9k
views
Can someone explain the differences between various 1000 genome project and gnomad call sets? Also any straightforward PCA implementation on them?
wgs
updated 4.0 years ago by
Ram
45k • written 4.0 years ago by
rjd254
• 0
0
votes
0
replies
714
views
Job:
Data Stewardship Community Manager
Management
Data
Community
engagement
4.0 years ago by
Hannah
• 0
6
votes
4
replies
1.5k
views
News:
Upcoming online training courses
Python
R
4.0 years ago by
Physalia-courses
★ 2.6k
8
votes
11
replies
2.1k
views
6 follow
Forum:
Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article
opinion
updated 2.4 years ago by
Ram
45k • written 4.8 years ago by
JC
13k
0
votes
4
replies
1.8k
views
How to create a BED12 file defining UTR sequences
Sequences
UTRs
BED12
updated 4.0 years ago by
Carlo Yague
9.0k • written 4.0 years ago by
baldissera152
▴ 10
1
vote
2
replies
1.1k
views
PLINK ASSOC understanding the results
A1
A2
SNP
ASSOC
PLINK
4.0 years ago by
Michal Nevo
▴ 140
4
votes
1
reply
1.1k
views
Tools for Alternative Splicing Events in RNA-Seq analysis
RNA-Seq
updated 4.0 years ago by
ATpoint
88k • written 4.0 years ago by
joe_genome
▴ 70
4
votes
5
replies
1.4k
views
heatmap column(sample) names disordered
heatmap.2
deseq2
Studio
R
updated 4.0 years ago by
cpad0112
21k • written 4.0 years ago by
ziziqolo
▴ 10
0
votes
0
replies
709
views
Sequencing file conversion
seurat
processing
sequence
scATAC-seq
data
CellRanger
4.0 years ago by
bill
• 0
1
vote
2
replies
1.3k
views
Is it normal for RCorrector to remove millions of reads?
filtering
read
RCorrector
Trinity
RNAseq
updated 4.0 years ago by
Dunois
★ 2.9k • written 4.0 years ago by
nina.maryn
▴ 30
0
votes
10
replies
2.4k
views
Replace multiple text with corresponding text
replacement
text
4.0 years ago by
fec2
▴ 50
1
vote
3
replies
1.4k
views
Analysing RNA seq data
rna-seq
annotation
bioconductor
updated 4.0 years ago by
Wakala
▴ 20 • written 4.0 years ago by
windsur
▴ 20
0
votes
0
replies
889
views
no variant remained after GenotypeGVCFs gatk4
GenotypeGVCFs
gatk4
variant
4.0 years ago by
Mehmet
▴ 820
0
votes
0
replies
814
views
Sortmerna error
rrna
rnaseq
sortmerna
4.0 years ago by
Stella
• 0
0
votes
1
reply
887
views
How to select dataset from 1000 genome
1000genomes
vcf
updated 2.4 years ago by
Ram
45k • written 4.0 years ago by
pragnapcu
▴ 10
0
votes
0
replies
1.1k
views
Job:
Postdoc position in phylogenomics and evolution of beetles
evolution
beetles
genomics
updated 2.4 years ago by
Ram
45k • written 4.0 years ago by
zyladagmara
• 0
3
votes
1
reply
2.1k
views
%% error in Rstudio
seurat
r
updated 22 months ago by
Ram
45k • written 4.0 years ago by
AbsaR
• 0
0
votes
0
replies
615
views
Mapping transcripts to mitogenome
alignment
4.0 years ago by
wes
▴ 90
3
votes
7
replies
3.3k
views
Read group info
BWA
bwa-mem2
updated 4.0 years ago by
Ishak
▴ 20 • written 4.0 years ago by
priya.bmg
▴ 70
1
vote
1
reply
2.5k
views
Seurat to Trajectory Analysis
scRNA
seurat
Pseudotime
Trajectory
updated 4.0 years ago by
ATpoint
88k • written 4.0 years ago by
AbsaR
• 0
0
votes
0
replies
776
views
scRNAseq STAR create index how to set --sjdbOverhang
scRNAseq
STAR
sjdbOverhang
4.0 years ago by
Binghong
▴ 20
0
votes
6
replies
2.4k
views
Allele frequency calculation
AF
VCF
snp
calc
updated 4.0 years ago by
sbstevenlee
▴ 480 • written 4.0 years ago by
rheab1230
▴ 140
1
vote
0
replies
716
views
Sequence alignment in Subio on personal PC
expression
differential
alignment
raw
analysis
count
sequence
gene
fastq
4.0 years ago by
catalyst
▴ 10
0
votes
0
replies
662
views
What is the best way to publish data from LIMS/ELN to DataLake
ELN
DataLake
Warehouse
LIMS
4.0 years ago by
Kubendra
• 0
0
votes
0
replies
629
views
Codon usage with unknown/unspecified Nucleotides - coRdon
nucleotides
Codon
unspecified
Usage
coRdon
4.0 years ago by
lucas.caue.jacintho
▴ 30
0
votes
1
reply
925
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 15 months ago by
Ram
45k • written 4.0 years ago by
Ashi
▴ 20
0
votes
0
replies
1.7k
views
Job:
Multiple data scientist positions in computational biomedicine
biomedicine
data-science
machine-learning
4.0 years ago by
pandey.gaurav
▴ 200
0
votes
8
replies
2.5k
views
From EC terms to GO terms to GO enrichment
enrichment
EC
terms
GO
4.0 years ago by
margot.27.muller
▴ 30
0
votes
0
replies
735
views
Is there any way to customise the colour codes for multiple-sequence alignment (MSA)?
alignment
Python
genomics
R
phylogeny
3.9 years ago by
Kumar
▴ 120
0
votes
0
replies
651
views
linkage disequilibrium and haplotype analysis of GWAS .
plink
plink1.9
GWAS
updated 2.4 years ago by
Ram
45k • written 4.0 years ago by
gdeep.14
• 0
1
vote
2
replies
1.8k
views
Understanding bcftools command
bcftools
merge
filter
updated 3.4 years ago by
Ram
45k • written 4.0 years ago by
rtho
▴ 20
0
votes
1
reply
702
views
How to get the assembly larger than 3.5Gb in NextDenovo?
assemble
NextDenovo
genome
large
updated 4.0 years ago by
GenoMax
152k • written 4.0 years ago by
Ural Yunusbaev
• 0
1
vote
2
replies
2.4k
views
Survival Analysis Cut-off
KaplanMeier
SurvivalAnalysis
CoxRegression
Cutoff
SPSS
updated 4.0 years ago by
Nitin Narwade
★ 1.6k • written 4.0 years ago by
science03
▴ 50
5
votes
4
replies
3.0k
views
Annotating cell types via integrating a query dataset with a reference dataset and then cluster
celltypeclassification
scRNAseq
3.9 years ago by
Kaz
• 0
0
votes
1
reply
1.1k
views
Job:
Community Engagement Scientist
neuroimaging
bioimaging
updated 2.4 years ago by
Ram
45k • written 4.0 years ago by
mmariano
• 0
1
vote
3
replies
1.4k
views
grep will not open text file that I created using split command in linux
grep
split
updated 4.0 years ago by
Ram
45k • written 4.0 years ago by
psb7
▴ 20
6
votes
3
replies
4.5k
views
PyMol - molecule export problem
PyMol
molecule
format
PDB
export
updated 4.0 years ago by
Mensur Dlakic
★ 29k • written 4.0 years ago by
macbas
▴ 20
121,625 results • Page
590 of 2433
Recent Votes
Answer: How do I generate synthetic 16S RNA gene sequences?
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How do I generate synthetic 16S RNA gene sequences?
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A: single cell RNA seq Differential Expression using MAST
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Comment: Tools to view fastq file
by
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152k
`FinchTV` is meant for use with ABI chromatogram (sanger sequencing) files. Don't think it can read fastq files. In any case there is no ca…
Comment: Does edgeR supports random effects?
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★ 8.2k
Subsetting to half the data will obviously change the results. The mean-variance relationship and the inter-block correlation need to be re…
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Obviously a very late response, here, but for anyone looking for answers now or in future: I'm sure there are other tools, but the one I…
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The BAM file has tags that contain the information you need. There are tags such as: * `MM`: Modified base motif and positions. …
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**The code was super helpful — thank you so much, Gordon! (cc: @gordonsmyth)** I ran the code and got the following results, but I’m a bit…
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I suggest that you give another (bbmap, bwa-mem2, bowtie etc) NGS aligner a try. STAR is splice-aware and likely has default options that l…
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by
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45k
Open a new question, add the detail you just gave GenoMax in that question, then delete this answer.
Comment: Significance of the term "tile" in sequencing?
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It's from NovaSeq6000
Comment: Significance of the term "tile" in sequencing?
by
Christopher
▴ 10
Okay, I apologize. Since I saw that this issue had already been mentioned in the forum, I thought it wasn’t necessary to create a new topic…
Answer: How do I generate synthetic 16S RNA gene sequences?
by
shelkmike
★ 1.7k
Maybe, the following is worth doing:<br> 1) First, you need to understand how much the natural sequences differ from the covariance model. …
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by
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There are 8 reference sequences in the fasta, total about 9,000 bases. I'm using STAR because it's what I've been using for these data and …
Comment: How do I generate synthetic 16S RNA gene sequences?
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> Why do you need to augment 16S rRNA sequences, given that tens of millions are already available? If your main reason is sequence diversi…
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Circular genome maps of unassembled contigs do not make much sense, unfortunately. Anyway, > Which tools should I use for drawing bacteria…
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Minimap 2 has two outputs the PAF format and the SAM format. Each has a documentation that describes how the information is encoded. In …
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166k
how about just asking this kind of questions in their github repo ?
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