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1.9k
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Understanding bcftools command
bcftools merge filter
updated 3.5 years ago by 45k • written 4.1 years ago by ▴ 20
0
votes
1
reply
729
views
How to get the assembly larger than 3.5Gb in NextDenovo?
assemble NextDenovo genome large
updated 4.1 years ago by 153k • written 4.1 years ago by • 0
1
vote
2
replies
2.4k
views
Survival Analysis Cut-off
KaplanMeier SurvivalAnalysis CoxRegression Cutoff SPSS
updated 4.1 years ago by ★ 1.7k • written 4.1 years ago by ▴ 50
5
votes
4
replies
3.1k
views
Annotating cell types via integrating a query dataset with a reference dataset and then cluster
celltypeclassification scRNAseq
4.0 years ago by Kaz • 0
0
votes
1
reply
1.1k
views
Job: Community Engagement Scientist
neuroimaging bioimaging
updated 2.5 years ago by 45k • written 4.1 years ago by • 0
1
vote
3
replies
1.5k
views
grep will not open text file that I created using split command in linux
grep split
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 20
6
votes
3
replies
4.7k
views
PyMol - molecule export problem
PyMol molecule format PDB export
updated 4.1 years ago by ★ 29k • written 4.1 years ago by ▴ 20
2
votes
1
reply
742
views
Bioinformatics application on data
WES
updated 2.5 years ago by 45k • written 4.1 years ago by • 0
3
votes
5
replies
1.8k
views
Downloading WGBS sequencing reads for cancer sample and healthy sample
Dataset Cancer WGBS Healthy
4.0 years ago by Nishat ▴ 10
0
votes
0
replies
1.3k
views
Job: Bioinformatician/Computational Biologist. Single cell genomics of primate brain to design cell-type-targeted viral vectors. 2 positions, Basel Switze…
AAV single-cell brain epigenomics
updated 2.2 years ago by 45k • written 4.1 years ago by ▴ 50
5
votes
5
replies
1.9k
views
Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding indirectbinding trancriptionfactors chipseq chipseqanalysis
updated 4.1 years ago by ▴ 520 • written 4.1 years ago by ▴ 130
2
votes
7
replies
1.1k
views
How can I get the exact 3D structure of the protein to use the PDB file for PPI docking
Uncharacterized Protein structure
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
3
votes
4
replies
6.2k
views
library(Seurat) shows error: package or namespace load failed for ‘Seurat’ in .doLoadActions(where, attach)
Seurat
updated 4.1 years ago by 89k • written 4.1 years ago by • 0
0
votes
0
replies
518
views
Multi-phenotype GWAS analysis, how to deal with high lambda
statistics GWAS
4.1 years ago by Miranda • 0
1
vote
2
replies
2.0k
views
Error in DESeqDataSetFromMatrix Function in DESeq Library
Differential Gene DESeq R Expression
updated 4.1 years ago by 15k • written 4.1 years ago by ▴ 50
0
votes
0
replies
515
views
PMut server error
PMut
updated 14 months ago by 45k • written 4.1 years ago by • 0
0
votes
4
replies
2.2k
views
Best match Blast
tblastx
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 10
2
votes
11
replies
9.9k
views
Alignment using bwa-mem2
alignment bwa-mem2
4.1 years ago by priya.bmg ▴ 70
4
votes
7
replies
1.9k
views
The usage of sed
linux sed shell
updated 4.1 years ago by 21k • written 4.1 years ago by • 0
0
votes
0
replies
642
views
Bioinformatic interrogation of non-coding variants in gVCFs
VCF gVCF non-coding
4.1 years ago by tacrolimus ▴ 150
0
votes
0
replies
359
views
Library normalization of data sets containing RFUs?
somascan
4.1 years ago by Ina Jungersen • 0
1
vote
3
replies
2.2k
views
Read group info
info read BWA group bwa-mem2
updated 4.1 years ago by 153k • written 4.1 years ago by ▴ 70
3
votes
5
replies
1.9k
views
Where do I get a WES dataset of size <1GB
WGS WES genomics
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by ▴ 10
3
votes
5
replies
18k
views
NCBI error report
blastp alignment
updated 2.2 years ago by 45k • written 9.5 years ago by ▴ 210
0
votes
1
reply
819
views
SRA splitting for each metagenome-assembled genome
SRA metagenome-assembled metagenome genome MAG splitting
updated 4.1 years ago by 21k • written 4.1 years ago by • 0
4
votes
8
replies
4.7k
views
8 follow
R Programming - how to make a simple heat map
Heatmap R
updated 4.1 years ago by 11k • written 4.1 years ago by • 0
0
votes
1
reply
1.4k
views
question about running CIRI-full
RNA-Seq
updated 4.1 years ago by • 0 • written 5.4 years ago by • 0
2
votes
2
replies
1.8k
views
How to identify mutations from FASTA sequences?
Mutation Fasta
updated 4.1 years ago by ▴ 20 • written 4.1 years ago by ▴ 80
0
votes
7
replies
2.3k
views
align using file.ht2
ht2 hisat2
updated 4.0 years ago by 45k • written 4.1 years ago by ▴ 30
0
votes
2
replies
4.1k
views
Export normalized matrix Scanpy
Scanpy
updated 4.1 years ago by ★ 1.7k • written 4.1 years ago by • 0
0
votes
0
replies
1.6k
views
Job: JOB OPPORTUNITY!!! Scientist, Next Generation Sequencing (Molecular Biology)
NGS careers
updated 2.2 years ago by 45k • written 4.1 years ago by • 0
2
votes
2
replies
1.4k
views
Samtools difference between Mapped and Unmapped read
unmapped samtools mapped
updated 4.1 years ago by 48k • written 4.1 years ago by • 0
0
votes
3
replies
1.4k
views
DESeq2 design question
RNA-seq DESeq2 R
updated 4.1 years ago by ▴ 390 • written 4.1 years ago by ▴ 30
1
vote
2
replies
1.2k
views
How to find the number of copies of genes (e.g. 23S rRNA) present in a genome?
antimicrobial-resistance reference-database copies-of-genes metadata NCBI
4.1 years ago by eli_bayat ▴ 100
0
votes
0
replies
593
views
Performing enrichment analysis using extracted GOs from topGO
analysis enrichment topGo Enrichment Functional
4.1 years ago by KennedyOmufwoko • 0
0
votes
2
replies
879
views
I can't find T cell receptors in my RNAseq expression table
TRDC t-cell NGS TRBC2 TRAC
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 20
0
votes
2
replies
3.8k
views
gatk4 python package
conda package python gatk4
4.1 years ago by Mehmet ▴ 820
2
votes
7
replies
3.6k
views
How do I log into this ftp server and look around?
ftp
updated 4.1 years ago by ★ 29k • written 4.1 years ago by ▴ 890
4
votes
5
replies
2.7k
views
Copy number differences between groups
CNA Differential GISTIC
updated 4.0 years ago by • 0 • written 7.0 years ago by ▴ 50
1
vote
4
replies
4.9k
views
how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
seurat pca umap
4.1 years ago by mk ▴ 310
1
vote
5
replies
6.5k
views
seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
seurat
updated 4.1 years ago by 13k • written 4.1 years ago by ▴ 310
1
vote
2
replies
1.3k
views
Low assignment rate with featureCounts
featureCounts RNA-seq STAR
4.1 years ago by gt ▴ 30
6
votes
8
replies
3.7k
views
k-mer counters - presence/absence matrix
k-mers matrix
4.1 years ago by lizabe ▴ 10
0
votes
0
replies
1.0k
views
Error while subsetting VCF - error doesn't check out with (z)grep
bcftools vcf
4.1 years ago by Ram 45k
0
votes
0
replies
1.6k
views
EOF marker absent in VCF - can this be safely ignored?
bcftools VCF EOF
4.1 years ago by Ram 45k
0
votes
0
replies
662
views
Job: Staff Scientist and Engineering positions at Scripps Research (San Diego CA or remote)
infectious-diseases data-visualization
updated 3.1 years ago by 45k • written 4.1 years ago by • 0
1
vote
2
replies
1.7k
views
Differential gene expression: remove effect of latent variables from log fold change
Seurat scRNA-seq genomics
4.1 years ago by danielcgingerich ▴ 10
1
vote
5
replies
1.5k
views
Local blast database
database update_blastdb.pl blast
4.1 years ago by Vasiliy Krestov ▴ 30
2
votes
2
replies
2.2k
views
blastx versus tblastx
tblastx blastx
4.1 years ago by aka ▴ 10
4
votes
4
replies
2.3k
views
Trimming of adapters and indexes
NGS small-DNA trimming trimmomatic sequencing
updated 4.1 years ago by 153k • written 4.1 years ago by ▴ 30
121,831 results • Page 595 of 2437
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Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
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Comment: Perform Hierarchical Clustering in R with ggdendro Visualization
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Comment: Learning Bioinformatics doing Projects by Anjali • 0
thank you.
Comment: Statistical test of difference between two conditions and account for the batch by ATpoint 89k
Are the batches biological replicates?
Comment: how to start by shelkmike ★ 1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
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> Read in data Add an example of what is in `data.csv`.
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That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
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Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
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Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
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Have you followed the insturctions for GenBank submissions here: https://submit.ncbi.nlm.nih.gov/about/genbank/ In any case it would be be…
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The denser the panel, the better. TOPMed provides maximum density and the best coverage of rare variants. It is the most powerful option, b…
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