Limit : all time
all time today this week this month this year
122,201 results • Page 608 of 2445
Sort: Rank
Rank Views Votes Replies
50
votes
16
replies
15k
views
12 follow
Tool: Omictools: A didactic directory for omic data analysis (NGS, microarray, PCR, MS, NMR)
pcr software ngs
updated 2.4 years ago by 45k • written 12.2 years ago by ▴ 450
0
votes
1
reply
1.1k
views
Syngeneic mouse model Database with RNA-seq data?
RNA-seq mouse tumor
4.3 years ago by Lesdormis • 0
1
vote
5
replies
3.9k
views
FastUniq error - Error in open left fastq file site1_R1_P_qtrim.fq for read!
software error fastuniq assembly
updated 7.5 years ago by 154k • written 7.5 years ago by ▴ 30
0
votes
0
replies
590
views
Pan-cancer over-expressed or down-regulated gene list
TCGA expression
4.3 years ago by Shicheng Guo ★ 9.6k
0
votes
4
replies
4.2k
views
Help with Pathway annotation after Seurat DE analysis
Seurat enrichment DE Pathway
4.3 years ago by mshubham • 0
0
votes
0
replies
770
views
Annovar output no comment column?
annovar GWAS annotation Annovar Post-GWAS
4.3 years ago by okiedokie1208 ▴ 40
1
vote
9
replies
4.5k
views
Help with Volcano plot
Volcano r plot ggplot
updated 4.3 years ago by ★ 90k • written 4.3 years ago by • 0
7
votes
5
replies
2.1k
views
Orthology, sequence similarity, and conservation of function
homology function similarity prediction sequence orthology
4.3 years ago by Dunois ★ 2.9k
0
votes
1
reply
971
views
PHYLIP file has not seq text.
iqtree alignment Vcf vcf2phylip
updated 4.3 years ago by ▴ 220 • written 4.3 years ago by • 0
0
votes
0
replies
814
views
Building vcf from most common alleles
vcf consensus variant
4.3 years ago by Eugene • 0
0
votes
0
replies
821
views
Does anyone have any experience in hacking MaxBin2 to handle custom marker sets?
metagenomics maxbin2 binning
4.3 years ago by O.rka ▴ 750
1
vote
0
replies
1.0k
views
Blog: Revisiting bulk RNA-Seq applications
RNASeq variants TWAS Neoantigens
updated 2.5 years ago by 45k • written 4.3 years ago by ▴ 340
0
votes
5
replies
1.4k
views
How would I go about picking out certain files in a FASTA file and putting them in a new, separate file?
MSA fasta dataset multiple_sequence_alignment
4.3 years ago by crisstyl ▴ 10
1
vote
1
reply
910
views
Demultiplex Quality
sequence demultiplex illumina
updated 4.3 years ago by 154k • written 4.3 years ago by • 0
0
votes
0
replies
582
views
Plink extracting individuals based on certain SNPs
Plink genotypes SNP
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
0
votes
0
replies
793
views
Job: Post-doc Job Opportunity in NYC
post-doc systems-biology computational-biology
updated 2.7 years ago by 45k • written 4.3 years ago by ▴ 30
1
vote
1
reply
1.1k
views
Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering
seaborn python Hierarchical clustering
updated 4.3 years ago by ▴ 650 • written 4.3 years ago by ▴ 70
0
votes
0
replies
763
views
Job: Job Opening: Bioinformatician and Sr. Bioinformatician at UCSC's Genomics Institute
genomics
updated 2.7 years ago by 45k • written 4.3 years ago by ▴ 30
6
votes
4
replies
1.8k
views
DESeq2 - design matrix and interaction terms
deseq2 rnaseq interactions LRT
updated 3.7 years ago by ★ 1.3k • written 4.3 years ago by • 0
1
vote
2
replies
2.3k
views
Interpretation of DESeq2 DE-analysis
differential DESeq2 expression R
updated 3.7 years ago by ★ 1.3k • written 4.3 years ago by ▴ 50
0
votes
0
replies
780
views
Kraken2 with phylogeny as input (instead of taxonomy)?
kraken phylogeny
4.3 years ago by cjb ▴ 10
0
votes
0
replies
795
views
Constructing GRNs from multimodal data?
multimodal scRNA-seq SCENIC GRN scATAC-seq
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 10
4
votes
4
replies
3.8k
views
Cell hashing vs barcoding
barcoding hashing
updated 4.0 years ago by ▴ 40 • written 4.3 years ago by • 0
0
votes
0
replies
1.2k
views
Pybedtools/pyranges/Bedtools: How to Identify features near genes, but where window size is only comprised of host sequence (excluding features)?
bedtools genetics pyranges pybedtools
4.2 years ago by Tobias • 0
3
votes
5
replies
5.4k
views
CRAM to BAM using SAMTOOLS
SAMTOOLS CRAM BAM
updated 4.3 years ago by 166k • written 4.3 years ago by • 0
1
vote
0
replies
670
views
Is there an updated Arabidopsis annotation for Mapman Desktop app?
Mapman Arabidopsis anotaions Updated
4.3 years ago by finn.scout.claassens ▴ 10
2
votes
2
replies
1.2k
views
How to map a file with mulitple olisogos to a reference genome
blastn
4.3 years ago by dominik.lagler ▴ 30
4
votes
3
replies
1.8k
views
Finding metagenomic short read sequences
antimicrobial reference short sequences reads data metagenomic resistance
updated 4.3 years ago by ★ 1.1k • written 4.3 years ago by ▴ 100
0
votes
0
replies
1.1k
views
Job: Group Leader – Structural Systems Biology
Computational-Systems-Biology
updated 3.0 years ago by 45k • written 4.3 years ago by ▴ 30
0
votes
0
replies
614
views
DE analysis for single cell data with strong batch effect or different sequencing depth
cell expression differential de single
4.3 years ago by Cheng Wei • 0
1
vote
2
replies
1.0k
views
vcf file genotypes
genotype vcftools GATK
4.3 years ago by Vic ▴ 140
0
votes
0
replies
2.3k
views
Making box plot with pvalue for a set of genes across clusters or condition using seurat RNA slot count data
seurat boxplot scrna
4.3 years ago by sam ▴ 30
4
votes
3
replies
2.2k
views
Decoy sequence for human reference GRCh38 assembly
reference genome Decoy assembly Human
updated 4.3 years ago by ★ 1.1k • written 4.3 years ago by ▴ 70
0
votes
0
replies
506
views
Selecting a group of genes for coexpression network
gene_coexpression_network rnaseq
4.3 years ago by GenesisBio • 0
0
votes
2
replies
1.3k
views
Gene filtering based on Coefficient of Variation > 50%
microarray
4.3 years ago by smrutimayipanda ▴ 20
0
votes
4
replies
2.3k
views
Best practice for running GATK VQSR on X chromosome
WGS GATK WES
4.0 years ago by samuelandjw ▴ 270
1
vote
1
reply
948
views
How to perform differential expression analysis without the matched normal tissue data?
RNA-Seq Differential Expression DE ICGC PCAWG
updated 4.3 years ago by 90k • written 4.3 years ago by ▴ 110
8
votes
7
replies
11k
views
8 follow
How to get rs number for the variants list?
SNP
updated 4.3 years ago by ▴ 40 • written 8.8 years ago by ▴ 10
22
votes
8
replies
16k
views
6 follow
SNP rsid by location?
snp
updated 4.3 years ago by ▴ 40 • written 12.8 years ago by ▴ 350
2
votes
2
replies
2.5k
views
Change STAR Parameters in rsem-calculate-expression
RNA-Seq RSEM STAR
updated 4.3 years ago by 23k • written 4.3 years ago by ▴ 340
3
votes
2
replies
1.8k
views
Percentages in relative abundance of 16s rRNA gene
metagenomics arn abundance relative 16s
updated 4.3 years ago by ▴ 590 • written 4.3 years ago by • 0
0
votes
2
replies
1.4k
views
Jupyterlab / Python : OSError and MemoryError help
Jupyterlab GSEApy GSEA Python
updated 4.3 years ago by 154k • written 4.3 years ago by ▴ 160
0
votes
2
replies
1.0k
views
Testing the net differences between 2 treatments, over the control
T-test
4.3 years ago by haasroni • 0
0
votes
3
replies
3.9k
views
Seurt Rename Orig.ident
Seurta cell RNAseq Single
updated 4.3 years ago by 90k • written 4.3 years ago by • 0
0
votes
0
replies
609
views
Interpreting Bedtools Intersection Between BAM and BED Files
bedtools
4.3 years ago by Steven Mick • 0
0
votes
3
replies
3.7k
views
How to calculate genotype concordance, comparing two .vcf files with Picard or SnpSift
picard GenotypeConcordance SnpSift
updated 4.3 years ago by 166k • written 5.2 years ago by ▴ 220
2
votes
3
replies
1.9k
views
Forum: Freelancers for bioinformatics web development
bioinformatics web-development freelance
updated 4.3 years ago by ★ 2.9k • written 4.3 years ago by ▴ 20
1
vote
2
replies
2.3k
views
Where can I find GPL571 cdf file?
CDF file Partek Gene Expression Value
updated 4.3 years ago by • 0 • written 7.8 years ago by ▴ 10
1
vote
0
replies
641
views
Exonerate edit distance threshold
Exonerate
updated 4.3 years ago by 11k • written 4.3 years ago by • 0
3
votes
1
reply
5.5k
views
Tutorial: Affymetrix HTA 2.0 id conversion
biomart HTA affymetrix Affymetrix 2.0
updated 21 months ago by ▴ 120 • written 4.3 years ago by ★ 90k
122,201 results • Page 608 of 2445
Recent Votes
strong appearing variant not found by haplotypecaller in -ERC mode and deepvariant but with haplotypecaller in normal mode
Answer: How can I easily remove overlapping transcripts, keeping only longest transcript
Answer: Log2 transformation is well used, but is there a good paper that can be used as
Answer: Flatten a GTF
Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
Can EdgeR of DeSeq be used for Single-cell RNA-seq?
Answer: Getting the overlap between two GTF files
Recent Locations • All
Norway, 11 minutes ago
Chile, 17 minutes ago
Russia, 19 minutes ago
Oviedo, 22 minutes ago
Iran, 24 minutes ago
Poland, 29 minutes ago
Columbus, OH, 34 minutes ago
Recent Awards • All
Popular Question to ecSeq Bioinformatics ▴ 20
Popular Question to QX ▴ 80
Popular Question to Lila M ★ 1.3k
Teacher to dthorbur ★ 3.2k
Popular Question to colindaven 8.1k
Teacher to ATpoint 90k
Popular Question to san96 ▴ 190
Recent Replies
Comment: ID unifiying across different datasets by GenoMax 154k
Each database has their own method of annotation/validation. Depending on resources available there may be a lag between the databases in t…
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Wu-Sheng Zhang • 0
Hi @arup , thank you very much for your suggestions, and here are the results -- they seems correct. May I have your suggestions? Thank you…
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding by samuel.a.odonnell ▴ 640
I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case. From what it sounds like, during th…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
Thanks a lot to be helpful I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 20
thanks for the quick reply. i posted the screenshot. gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by thomas.heigl.ibk ▴ 20
here the igv view. showing the histogram for all samples plus the reads for one: ![enter image description here][1] and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Arup Ghosh 3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria by Pierre Lindenbaum 166k
> Any suggestions or help you could share please, show us an IGV screenshot of the position GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome? by alexandrakortsi • 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding by xinguok794 ▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around by Luca Arbore ▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets by GenoMax 154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets by DrSmad ▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets by zizigolu ★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Traffic: 4440 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6