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121,903 results • Page 631 of 2439
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Merlin haplotyping problem
pedigree inference snps haplotype merlin
4.3 years ago by S. Roa ▴ 10
1
vote
3
replies
1.0k
views
Low percentage explained by PCs
PCA SNPRelate
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
0
votes
0
replies
840
views
GO enrichment analysis in Blast2GO
Ontology Gene Enrichment Blast2GO
4.3 years ago by a.sugi30 • 0
0
votes
1
reply
2.7k
views
Get Rs Number Based On Chromosome and Position in GWAS summary statistics
Annovar rsID geneticposition
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
0
votes
3
replies
1.3k
views
Normalisation of RNA-seq data for coexpression analysis
RNA-seq coexpression normalisation
updated 4.3 years ago by 89k • written 4.3 years ago by • 0
1
vote
7
replies
1.7k
views
For loop STAR not working
RNA-Seq STAR
updated 2.2 years ago by 45k • written 4.3 years ago by ▴ 30
0
votes
1
reply
794
views
How to calculate the SNP score?
SNP SCORE
updated 4.3 years ago by 45k • written 4.3 years ago by • 0
1
vote
2
replies
1.2k
views
Look at Different Locus in the Bam File
Genome HG38 Rna-Seq Nanopore Sequencing
4.3 years ago by santos48 ▴ 40
0
votes
4
replies
975
views
Mapping gene list with chromosome location
R
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 70
0
votes
2
replies
913
views
Unzipped output files: fasta files in python
fasta python
updated 4.2 years ago by 45k • written 4.3 years ago by ▴ 20
0
votes
8
replies
2.2k
views
Inconsistency in SNP calls using bcftools merge for multiple vcf files
bcftools vcf snp
4.3 years ago by evafinegan • 0
2
votes
1
reply
655
views
Incrementally updating index files for Blast and for Bowtie2
blast index bowtie
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 30
1
vote
4
replies
2.1k
views
RNA-seq differential analysis with N batches and a technical replicate in each batch
RNA-Seq deseq2 differential analysis edger
updated 4.3 years ago by • 0 • written 5.6 years ago by • 0
0
votes
1
reply
1.6k
views
Five-parameter logistic (5PL) regression - Python or R ?
Bioassay 5PL Python R
updated 4.3 years ago by ▴ 90 • written 4.3 years ago by • 0
4
votes
2
replies
1.1k
views
Presence of proteins in a group of organisms
proteins restriction BLAST
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 30
2
votes
2
replies
927
views
Unable to read fasta file
fasta
updated 2.5 years ago by 45k • written 4.3 years ago by • 0
1
vote
4
replies
1.1k
views
What is the best short reader to very large reference fasta?
mapping alignment fastq bowtie2 bwa read
4.3 years ago by O.rka ▴ 750
7
votes
5
replies
2.0k
views
On whether or not to normalize scRNAseq expression like qPCR
single-cell qpcr rnaseq
updated 4.3 years ago by 22k • written 4.3 years ago by ▴ 380
2
votes
16
replies
8.8k
views
11 follow
PSMC: fq2psmc conversion problems
PSMC conversion fastq psmcfa
updated 3.4 years ago by ▴ 40 • written 7.0 years ago by ★ 3.1k
3
votes
11
replies
2.6k
views
How to associate a gene to one general function?
gene function
4.3 years ago by Francois Piumi ▴ 70
0
votes
2
replies
1.1k
views
BED Heatmap
ChIP-seq
updated 4.3 years ago by 45k • written 4.3 years ago by ▴ 100
3
votes
7
replies
3.8k
views
6 follow
PSMC Illegal division by zero
genome software error sequence
3.7 years ago by YocelynGG ▴ 70
2
votes
5
replies
3.3k
views
snakemake job status monitoring
snakemake pipelines
4.3 years ago by Eugene A ▴ 190
1
vote
3
replies
1.3k
views
Read alignment anomaly
igv reads rna-seq
4.3 years ago by daewowo ▴ 80
4
votes
3
replies
1.1k
views
which genes causes breast cancer?
Breast Cancer
updated 4.3 years ago by 56k • written 4.3 years ago by • 0
4
votes
4
replies
1.3k
views
analysis of novel SARS-CoV-2 genomes
processing phylogenetics analysis COVID19
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 140
6
votes
6
replies
2.7k
views
How to generate GTF file from BLAST output?
GTF
4.3 years ago by mathavanbioinfo ▴ 80
13
votes
12
replies
3.1k
views
How to determine reasonable expression threshold for of a gene from scRNAseq to imply its biological significance
statistics single-cell rnaseq
4.2 years ago by gundalav ▴ 380
0
votes
0
replies
581
views
When to use Pharmacophore and QSAR, in which conditions.
design Drug
4.3 years ago by Sachidanand • 0
38
votes
8
replies
55k
views
11 follow
Adding Read Groups To Bam Files
bam gatk samtools bwa
updated 4.3 years ago by 12k • written 13.3 years ago by 12k
1
vote
8
replies
1.9k
views
Seqff.r script is giving error while running
R
4.2 years ago by smrutimayipanda ▴ 20
1
vote
1
reply
3.5k
views
Interpret Clustal Omega Distance/Percent Identity Output for Multiple Proteins
Omega Clustal similarity sequence
updated 4.3 years ago by ★ 30k • written 4.3 years ago by ▴ 50
0
votes
0
replies
580
views
Detecting genetic mutation with raw data
mutation Krt1 genetic hyperkeratosis krt10
4.3 years ago by Amanda • 0
4
votes
5
replies
1.5k
views
Are there any statistical method is suitable to solve
z-test
updated 2.8 years ago by 45k • written 4.3 years ago by ▴ 120
2
votes
4
replies
44k
views
python 3.8 'No module named pip'
rna-seq
updated 4.3 years ago by ▴ 10 • written 5.2 years ago by • 0
0
votes
1
reply
900
views
Downloading bacterial reference genome
reference genome
updated 4.3 years ago by 8.7k • written 4.3 years ago by • 0
0
votes
1
reply
914
views
Where to get the human mitochondiral reference genome?
GTF human genome mitochondiral
updated 4.3 years ago by 153k • written 4.3 years ago by ▴ 80
2
votes
4
replies
1.3k
views
Advantages of split by chromosome?
cnv split gatk
updated 4.3 years ago by 166k • written 4.3 years ago by ▴ 20
5
votes
4
replies
3.4k
views
distance matrix as input in R clustering functions ?
k-medioids-genetic-distances-mash R Clustering
updated 4.2 years ago by 27k • written 4.3 years ago by ▴ 140
0
votes
0
replies
581
views
missing calls for a vcf file
SNP
4.3 years ago by evafinegan • 0
5
votes
7
replies
2.8k
views
How to find the functions of Reactome pathways?
Pathways reactome pathways DAVID
updated 4.3 years ago by ▴ 580 • written 7.3 years ago by ▴ 260
0
votes
0
replies
712
views
ANOVA testing
R ANOVA p-values
4.3 years ago by ehruan ▴ 10
1
vote
1
reply
1.5k
views
Plink error: Variant names are limited to 16000 characters.
plink imputation
updated 4.3 years ago by 12k • written 4.3 years ago by ▴ 10
1
vote
5
replies
2.9k
views
Job: Computational Biologist position at the University of Alabama at Birmingham
UAB Transcriptomics Computational
updated 4.2 years ago by 45k • written 4.4 years ago by ▴ 20
0
votes
3
replies
2.5k
views
Job: Statistical Bioinformatics Laboratory Head, WEHI, Melbourne, Australia
Australia
updated 2.3 years ago by 45k • written 4.4 years ago by ★ 8.3k
4
votes
9
replies
2.6k
views
randomly sampling long read data for genome assembly
pacbio assembly genome
4.3 years ago by jleehan ▴ 120
3
votes
8
replies
4.0k
views
Correlation plot
Correlation R corrplot
updated 4.3 years ago by ▴ 160 • written 4.3 years ago by ▴ 180
3
votes
5
replies
1.2k
views
6 follow
What genes are mutated in Lukemia?
Lukemia
updated 4.3 years ago by 11k • written 4.3 years ago by • 0
2
votes
4
replies
4.0k
views
TCGA Sample barcode
Tumor Barcode Normal TCGA
updated 4.3 years ago by 6.1k • written 4.3 years ago by ▴ 60
0
votes
1
reply
706
views
combine metagenomic assemblies using cat?
Assembly
updated 4.3 years ago by 3.9k • written 4.3 years ago by ▴ 60
121,903 results • Page 631 of 2439
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Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Is this PCA plot correct??
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Recent Replies
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Comment: Whole Genome Sequencing IG regions by 719 • 0
Sorry for the poor wording of the original post, also should say I really appreciate people taking a moment to look at my post. My main con…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Thomas.H.Hampton ▴ 10
Thanks again for your carefully considered reply. You asked what I am hoping to learn from a DE analysis. Autologous stem cells are well …
Comment: Subsetting before QC in Spatial Transcriptomics by Kent ▴ 30
Hi ATpoint, thank you very much for the helpful insight! I'm still doing some literature reading on this myself, but have you come across a…
Comment: Whole Genome Sequencing IG regions by ATpoint 89k
The question is what you are after. Is this a disease setup, or...well, what is this all about. Generally, these regions are hotspots of hy…
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