Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
122,199 results • Page
647 of 2444
Sort: Rank
Rank
Views
Votes
Replies
10
votes
11
replies
6.2k
views
Help with rownames in DESeq2
DESeq2
DEG
Rstudio
R
updated 4.5 years ago by
Qamarul
• 0 • written 4.5 years ago by
Diana Charles
▴ 10
0
votes
0
replies
827
views
News:
Event: Women in data science and bioinformatics - perspectives from industry and academia
gender
women
equality
event
data-science
updated 4.4 years ago by
Ram
45k • written 4.5 years ago by
Erin Haskell
▴ 470
4
votes
2
replies
1.6k
views
Use TPM to compare between the samples
TPM
Analysis
RNA-seq
DE
4.5 years ago by
Kunal
• 0
1
vote
5
replies
4.1k
views
SNPs file for reference genome (Mouse - GRCm39)
Mouse
SNPs
Rna-seq
Genome
GRCm39
4.5 years ago by
David Martínez
▴ 10
1
vote
10
replies
3.3k
views
Help with mitochondrial sequences from GenBank!!!
ftp
genbank
mitochondrial
4.5 years ago by
Matteo Ungaro
▴ 130
0
votes
0
replies
960
views
Job:
ELIXIR/EMBL-EBI: Front-end or full-stack web developer
front-end
web-developer
data
FAIR
updated 4.4 years ago by
Ram
45k • written 4.5 years ago by
Erin Haskell
▴ 470
0
votes
0
replies
1.1k
views
Job:
ELIXIR/EMBL-EBI: Project Manager/Senior Project Coordinator - COVID-19
EMBL-EBI
project
data
COVID-19
COVID
management
4.5 years ago by
Erin Haskell
▴ 470
0
votes
4
replies
1.3k
views
Mutation Software
Mutation
updated 4.4 years ago by
Kevin Blighe
★ 90k • written 4.5 years ago by
ankurhalder116
• 0
0
votes
1
reply
872
views
RNA-seq: extraction and annotation of differentially expressed genes
RNAseq
Galaxy
DEG
analysis
updated 4.5 years ago by
Carlo Yague
9.0k • written 4.5 years ago by
Zineb
▴ 10
8
votes
8
replies
3.4k
views
Do I need Illumina Demultiplexing for RNASeq?
Demultiplexing
Galaxy
RNASeq
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
Hashirama
▴ 20
2
votes
1
reply
2.6k
views
Creating a haplotype map now that the HapMap site has been taken down
HapMap
updated 4.5 years ago by
monkeyrota
• 0 • written 9.3 years ago by
djv4
▴ 10
5
votes
10
replies
6.5k
views
9 follow
Error ecountered while running conifer with demo data set
conifer
python
numpy
cnv
updated 4.5 years ago by
temp_1
▴ 20 • written 8.4 years ago by
mruduka.patel
▴ 10
2
votes
1
reply
961
views
STRINGdb "Expected Interactions"?
STRINGdb
updated 4.5 years ago by
Mensur Dlakic
★ 30k • written 4.5 years ago by
Kind Katydid
▴ 30
4
votes
4
replies
2.7k
views
How much weights a million reads
sequencing
4.5 years ago by
gubrins
▴ 350
0
votes
4
replies
1.2k
views
Gene-filterin In R
R
4.5 years ago by
soniabedi.07
▴ 30
4
votes
3
replies
3.3k
views
STAR Aligner --quantMode GeneCounts
RNA-Seq
STAR
updated 4.5 years ago by
swbarnes2
15k • written 4.5 years ago by
Seigfried
▴ 80
2
votes
2
replies
4.1k
views
Extract chromosome 1 - 22 ,X and Y from BAM file
NGS
updated 4.5 years ago by
Jorge Amigo
14k • written 4.5 years ago by
shubhamkumbhar420
▴ 40
0
votes
0
replies
687
views
Haplotype inference algorithms in Pedigrees
algorithms
pedigree
inference
snps
haplotype
4.5 years ago by
S. Roa
▴ 10
2
votes
1
reply
1.6k
views
What does “non-log-linear space” mean for genomic data?
Data
updated 4.5 years ago by
seidel
11k • written 4.5 years ago by
willy
▴ 10
0
votes
4
replies
2.1k
views
ComplexHeatmap Package takes forever to plot
ComplexHeatmap
heatmap
updated 4.5 years ago by
cpad0112
21k • written 4.5 years ago by
5510jingjing1212
• 0
0
votes
0
replies
660
views
Differentiating alleles from paralogs in comparison of transcriptomes within species
clustering
transcriptome
paralog
trinity
assembly
4.5 years ago by
jfaberha
▴ 50
2
votes
2
replies
1.0k
views
Concatenate multifastas
join
fasta
concatenate
multifasta
4.5 years ago by
Colaptes
▴ 120
0
votes
2
replies
2.9k
views
TCGA-BRCA downloading issue by GDCquery
TCGABiolinks
TCGA-BRCA
updated 2.7 years ago by
Ram
45k • written 4.5 years ago by
H. Z. Amini
• 0
2
votes
3
replies
2.9k
views
merging two VCF files
gatk
dictionary
vcf
updated 4.5 years ago by
sbstevenlee
▴ 480 • written 4.5 years ago by
Zahra
▴ 110
0
votes
0
replies
553
views
Tools to view pacbio assembly
genome
4.5 years ago by
K
▴ 10
1
vote
4
replies
5.5k
views
Reasons For Low Ts/Tv Ratio
exome
snp
written 14.2 years ago by
Les Ander
▴ 110
2
votes
1
reply
2.0k
views
gffcompare class_code "u"
gffcompare
updated 4.5 years ago by
badribio
▴ 290 • written 4.5 years ago by
chinu
• 0
0
votes
4
replies
3.3k
views
Low Counts with featureCounts
RNA-Seq
featureCounts
updated 4.5 years ago by
badribio
▴ 290 • written 5.3 years ago by
Neat
• 0
2
votes
3
replies
2.2k
views
How we can use DEG data for GSEA analysis
GSEA
4.5 years ago by
yeshiwork2000
• 0
0
votes
1
reply
836
views
Create Annotation for Long Read Nanopore Rna-Seq Data
Nanopore
Annotation
Rna-Seq
updated 4.5 years ago by
GenoMax
154k • written 4.5 years ago by
santos48
▴ 40
0
votes
0
replies
1.1k
views
Minor Allele Frequency error when running imputation using Beagle 5.2
Beagle
4.5 years ago by
nad7wf
• 0
0
votes
2
replies
1.1k
views
How to convert vcf file of GA100K data into bfile ie. .bed, .bim, .fam?
VCF
4.5 years ago by
Rudra
• 0
1
vote
5
replies
1.5k
views
How to calculate SNP frequency for each population in bfile using plink?
Frequency
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
Rudra
• 0
2
votes
1
reply
991
views
Study variation of some genes by VCF file
VCF
mutation
updated 4.5 years ago by
Ram
45k • written 4.5 years ago by
Zahra
▴ 110
0
votes
0
replies
938
views
News:
Online Training - RADseq data analysis course
RADseq
4.5 years ago by
Physalia-courses
★ 2.7k
0
votes
0
replies
1.1k
views
freebayes produces gvcfs with shifted CHROM entries
gvcf
SNP-call
freebayes
4.5 years ago by
johanna.pieplow
• 0
1
vote
4
replies
2.7k
views
How to generate single sequence from assembled contigs?
assembly
contigs
genomics
updated 4.5 years ago by
Dunois
★ 2.9k • written 4.5 years ago by
Anisur Rahman
▴ 80
1
vote
2
replies
1.2k
views
Any pipeline/tool to predict fungal virulence factors ?
gene
genome
sequence
updated 2.4 years ago by
Ram
45k • written 4.5 years ago by
Kumar
▴ 120
6
votes
3
replies
1.5k
views
Forum:
Asking for content suggestions for updated bioinformatics book
python
updated 4.5 years ago by
ATpoint
90k • written 4.5 years ago by
tiagoantao
▴ 690
1
vote
4
replies
1.6k
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression
TCGA
RTCAG
4.5 years ago by
pt.taklifi
▴ 70
0
votes
4
replies
4.2k
views
Flye assembly of a bacterial genome stuck
assembly
Flye
updated 4.5 years ago by
andres.firrincieli
3.9k • written 4.5 years ago by
A_heath
▴ 180
2
votes
4
replies
7.4k
views
Difficulty filtering VCF file with vcftools
SNP
updated 4.5 years ago by
sbstevenlee
▴ 480 • written 9.1 years ago by
rc16955
▴ 110
1
vote
2
replies
2.1k
views
KING relatedness inference working way too long...
large-cohort
4.5 years ago by
German.M.Demidov
★ 3.0k
0
votes
4
replies
1.9k
views
Issue with memory and the gcsa index in toil-vg
toil-vg
vg
vgteam
4.5 years ago by
jcmouren
• 0
0
votes
2
replies
1.1k
views
RNA-seq different reads numbers of two samples is trouble?
RNA-Seq
R
seq
python
linux
updated 4.5 years ago by
MatthewP
★ 1.4k • written 4.5 years ago by
szp770
▴ 10
0
votes
0
replies
838
views
How to merge the mutations from multiple samples of one patient
MutSig2CV_NC
MutSig2CV
cancer
mutation
merge
4.5 years ago by
Rongxin
▴ 40
0
votes
9
replies
4.1k
views
Using wildcards in function in rules
snakemake
rules
wildcards
updated 4.5 years ago by
kanika.151
▴ 160 • written 4.5 years ago by
aka
▴ 10
4
votes
7
replies
5.9k
views
6 follow
Tool:
MAGERI: a software tool for calling rare variants and detecting circulating tumor DNA from UMI-tagged high-throughput sequencing data
rare-variant
resequencing
umi
ctDNA
updated 21 months ago by
blid11
• 0 • written 8.6 years ago by
mikhail.shugay
3.5k
0
votes
0
replies
950
views
Avoid genome circularization with Canu assembler
circularization
ONT
Canu
repetitive-regions
assembler
updated 19 months ago by
Ram
45k • written 4.5 years ago by
Maria
• 0
0
votes
1
reply
1.1k
views
read ids along with transcript ids
stringtie
flair
read
correction
nanopore
updated 4.5 years ago by
Istvan Albert
103k • written 4.5 years ago by
akanksha.srivastava
• 0
122,199 results • Page
647 of 2444
Recent Votes
Comment: Can i use orthofinder for small protein datasets and not full proteome?
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Answer: Can i use orthofinder for small protein datasets and not full proteome?
Answer: Midpoint rooting IQTREE newick file moves node support around
Answer: Subsetting before QC in Spatial Transcriptomics
Answer: Feature Counts vs Salmon quantification
Comment: Feature Counts vs Salmon quantification
Recent Locations •
All
Switzerland,
just now
Karolinska Institutet, Sweden,
3 minutes ago
United States,
4 minutes ago
France,
7 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087,
10 minutes ago
United States,
11 minutes ago
Germany,
11 minutes ago
Recent Awards •
All
Popular Question
to
colindaven
8.1k
Teacher
to
ATpoint
90k
Popular Question
to
san96
▴ 190
Popular Question
to
RD
▴ 30
Popular Question
to
Wilber0x
▴ 70
Popular Question
to
DrSmad
▴ 10
Popular Question
to
Rubemsilva32
• 0
Recent Replies
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
• 0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴ 10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Comment: Subsetting before QC in Spatial Transcriptomics
by
Kent
▴ 30
Hi Kevin, Thanks for the detailed explanation. Due to the characteristics of the datasets, we initially used very lenient quality control…
Comment: Midpoint rooting IQTREE newick file moves node support around
by
Luca Arbore
▴ 10
Thank you very much Kevin, it worked!
Comment: ID unifiying across different datasets
by
GenoMax
154k
In this case the entry notes that this is likely the product of a pseudogene: https://www.uniprot.org/uniprotkb/Q5VTE0/entry and existence …
Comment: Comparison of different RNAseq data sets
by
DrSmad
▴ 10
Each lab contributes both control and LPS. Example, for cell line A_lab1 did and analysis on control and LPS-6h. Cell line B_lab2 did contr…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
sorry, why some gene names are often lacking though the Uniprot ID is still valid (using biomart)?
Comment: snpEff: Unsupported structural variant types
by
shpak.max
▴ 70
Unfortunately, while it ran without a problem initially, when I checked the run screen today, I saw the following error message (and unlike…
Comment: ID unifiying across different datasets
by
GenoMax
154k
You can use the [**ID mapping tool**][1] from UniProt site (third ID did not map from the list above): From To P68104 ENSG0000015…
Answer: The geo samples is not having sentrix id and sentrix position. But this informat
by
yura.grabovska
▴ 890
Crosspost from related question: https://www.biostars.org/p/9616466/#9616534 ``` ##Using R, illuminaio from Bioconductor library(…
Answer: Finding Sentrix ID in HM450K arrays
by
yura.grabovska
▴ 890
``` ##Using R, illuminaio from Bioconductor library(illuminaio) temp.idat <- readIDAT(file = "200379120087_R02C02_Grn.idat") tem…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
michael.ante
★ 4.0k
Do you want to compare them by sequence or by function? For the later, you can use e.g. InterProScan, KoFamScan.
Answer: Can i use orthofinder for small protein datasets and not full proteome?
by
dthorbur
★ 3.2k
If you're just using the tool for clustering purposes, I think OrthoFinder might be a little clunky and would recommend using something lik…
Comment: ID unifiying across different datasets
by
zizigolu
★ 4.4k
Thank you; The problem is let's say in the protein ID column I see `Q5VTE0;P68104;Q05639` here I am sure I should get which `ENSG` for eac…
Comment: How to improving 2-Nucleotide RNA-seq Mapping Accuracy
by
2411110159
• 0
Since we do not have real data yet, I tried to simulate this using strand-specific RNA bisulfite-seq reads (C to T). Read1 corresponds to t…
Traffic: 4065 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6