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121,991 results • Page
651 of 2440
Sort: Rank
Rank
Views
Votes
Replies
6
votes
6
replies
4.6k
views
What is a FASTA format file ?
Sequence
NCBI
FASTA
Genome
updated 2.6 years ago by
Ram
45k • written 4.4 years ago by
Student
▴ 30
5
votes
6
replies
3.2k
views
How can I join multiple columns from different datasets together in R?
r
4.4 years ago by
valentinavan
▴ 50
1
vote
3
replies
2.2k
views
GATK ApplyVQSR filtering doesnt work
gatk
variant
calling
germline
4.4 years ago by
nhaus
▴ 420
2
votes
3
replies
2.6k
views
Where can I find the rRNA sequence of E.coli?
rRNA
E.coli
4.4 years ago by
Inayat
• 0
0
votes
0
replies
829
views
Generating random bed with interval lenghts following exponential distribution
length
bed
distribution
intervals
random
4.4 years ago by
Bertalan_Takacs
▴ 140
1
vote
1
reply
3.1k
views
Filter a VCF by genotype posterior probabilities (GP) obtained when imputing with beagle
genotypes
imputation
vcf
bcftools
beagle
updated 4.4 years ago by
4galaxy77
2.9k • written 4.4 years ago by
Alejandro
▴ 10
3
votes
2
replies
3.0k
views
Bedtools intersect PE BAM reads
intersect
BAM
bedtools
4.4 years ago by
maxrwjones
▴ 60
8
votes
6
replies
7.3k
views
Tool:
chromoMap- R package for Interactive visualization and Annotation of chromosomes or regions of any living organism.
annotation
R
genome
visualization
updated 2.3 years ago by
Ram
45k • written 6.5 years ago by
lakshayanand15
▴ 90
0
votes
0
replies
767
views
PRSice and time to event data
PRSice
PRS
Survival
4.4 years ago by
Sharon.Johnatty
• 0
0
votes
0
replies
736
views
NDEx database data download
ndex
database
pathway
4.4 years ago by
Shicheng Guo
★ 9.6k
0
votes
2
replies
1.3k
views
TWAS analysis
TWAS
predixscan
4.4 years ago by
rheab1230
▴ 150
1
vote
1
reply
1.7k
views
Best method to visualize metagenomic data besides krona?
metagenomics
krona
updated 4.4 years ago by
andres.firrincieli
3.9k • written 4.4 years ago by
DNAngel
▴ 260
2
votes
2
replies
1.1k
views
Do EGA RNAseq .bam files come with gtf/gff file corresponding to the genome assembly used?
gtf
gff
RNAseq
bam
EGA
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
rva_jango
▴ 10
4
votes
3
replies
1.5k
views
Where is the most up-to date TCGA clinic data?
TCGA
updated 4.4 years ago by
Zhenyu Zhang
★ 1.3k • written 4.4 years ago by
jack.henry
▴ 50
5
votes
4
replies
3.9k
views
How do I properly visualize ATAC seq data on UCSC browser
peaks
UCSC
ATAC_seq
4.4 years ago by
rb56
▴ 30
13
votes
9
replies
10k
views
EnhancedVolcano: How to coloring custom gene points in volcano plot?
EnhancedVolcano
updated 4.4 years ago by
Kevin Blighe
89k • written 5.4 years ago by
choijamtsm
▴ 70
2
votes
1
reply
1.7k
views
PLINK Clumping d-prime or r2?
GWAS
PLINK
updated 4.4 years ago by
Lemire
▴ 940 • written 4.4 years ago by
Filago
▴ 110
2
votes
3
replies
1.2k
views
extracting parts of vcf file
vcf
plink
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
storm1907
▴ 30
1
vote
7
replies
3.9k
views
bbduk trimmed out too many sequences
bbduk
bbmap
amplicon
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
AfinaM
▴ 30
0
votes
2
replies
2.2k
views
How to grep fasta sequence using list of IDs
grep
FASTA
Sequence
4.4 years ago by
Kumar
▴ 170
4
votes
1
reply
982
views
R script for Gene ID Mapping?
mapping
R
IDmapping
geneID
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
shrgur
• 0
0
votes
2
replies
825
views
Looking for a user-friendly comparative genomics program
comparative
genomics
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
kira kira
• 0
41
votes
20
replies
41k
views
12 follow
output TMM normalized counts with edgeR
differential expression
RNA-Seq
updated 3.4 years ago by
N.
• 0 • written 7.4 years ago by
guillaume.rbt
★ 1.0k
1
vote
2
replies
5.1k
views
CPM or pesudo.counts, which is the normalized counts
edgeR, CPM
edgeR
cpm
pesudo.counts
updated 4.4 years ago by
shengxin1015
▴ 10 • written 9.9 years ago by
lilingjoyo
▴ 40
0
votes
5
replies
2.5k
views
the fixed-effects model matrix is column rank deficient when adding a variable
voom
LIMMA
dream
RNA
rescale
updated 4.4 years ago by
Shab86
▴ 310 • written 4.4 years ago by
Will
▴ 20
4
votes
4
replies
2.5k
views
Extracting reads from BAM file based on partial read name
BAM
CLI
picard
RNA-Seq
updated 4.4 years ago by
seidel
11k • written 4.4 years ago by
julianneradford
▴ 20
2
votes
3
replies
1.9k
views
Deleterious or Protective? --> CADD score >20 but Odds ratio <1
variant
deleteriousness
genomics
updated 4.4 years ago by
Kevin Blighe
89k • written 4.4 years ago by
Shab86
▴ 310
1
vote
3
replies
1.2k
views
Help with record.id
pyrosetta
python
biopython
updated 2.6 years ago by
Ram
45k • written 4.4 years ago by
Maya
• 0
3
votes
5
replies
2.3k
views
how can I turn a skinny/long data frame into a Seurat object
sparse-matrix
seurat
scrna-seq
4.4 years ago by
glocke01
▴ 190
2
votes
14
replies
2.9k
views
Genetic Variants in NGS analysis
variants
NGS
4.4 years ago by
sarastrafella.ss
▴ 20
0
votes
0
replies
677
views
Batch Effects in Multiplexed Perturbations
demultiplexing
cellhashing
singlecell
scRNAseq
4.4 years ago by
fouerghi20
▴ 90
0
votes
2
replies
921
views
VennDiagram for differentially expressed proteins
proteomics
VennDiagram
4.4 years ago by
yannick.venturaavila
• 0
7
votes
4
replies
7.6k
views
scvelo vs velocyto
velocyto
python
scvelo
updated 3.6 years ago by
Friederike
9.0k • written 4.4 years ago by
Jeffrey3555054
▴ 20
0
votes
5
replies
2.2k
views
FeatureCounts error
RNAseq
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
m.wlodarczyk214
• 0
0
votes
1
reply
860
views
Variable name shuffles in Correlation Plot in R
R
Biostatistics
Corrplot
Correlation
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
jansha.1997
• 0
0
votes
1
reply
695
views
Gene name according to assembly
hg38
genome
assembly
name
hg18
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
GG
• 0
2
votes
4
replies
2.6k
views
hg18, hg19, hg38
hg38
hg19
genome
assembly
hg18
updated 4.4 years ago by
GenoMax
154k • written 4.4 years ago by
GG
• 0
1
vote
2
replies
2.7k
views
Remove sites with heterozygote excess with VCFtools
SNPs
genomics
VCFTools
hetexcess
4.4 years ago by
Konstantinos
• 0
0
votes
2
replies
1.4k
views
How do commercially NIPT tests work?
NIPT
NGS
Defrag
WisecondorX
Sanefalcon
updated 4.4 years ago by
German.M.Demidov
★ 3.0k • written 5.2 years ago by
Lucas
▴ 20
0
votes
0
replies
613
views
Prediction model in R
Prediction
R
Rstudio
model
4.4 years ago by
yura.10.08.94.94
• 0
0
votes
0
replies
792
views
Tool/server for metal ion amino acid binding site prediction ?
proteomics
database
python
genomics
updated 4.3 years ago by
Ram
45k • written 4.4 years ago by
Kumar
▴ 120
2
votes
1
reply
1.6k
views
Error with SRA Toolkit prefetch command
timeout
sra
ncbi
https
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
elisheva
▴ 120
4
votes
3
replies
3.5k
views
Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
uniquely
RNA-seq
mapping
bulk
downsampling
4.4 years ago by
msimmer92
▴ 310
0
votes
0
replies
559
views
Selective sweep for scaffold level reference genome
positiveselection
denovo
selectivesweep
scaffold
4.4 years ago by
Mel Kile
• 0
1
vote
4
replies
1.6k
views
What is the advantage of having BAM files per sample compared to one BAM file containing all samples?
NGS
BAM
SNPcalling
4.4 years ago by
L_to_the_m
▴ 10
1
vote
9
replies
1.9k
views
Can anyone please name this tool to make a genome map?
graphics
genome
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
zack.saud
▴ 50
0
votes
5
replies
1.6k
views
Problem creating a reference genome
reference
custom
genome
4.4 years ago by
lydiaiglesias
• 0
1
vote
7
replies
16k
views
A problem with download SRA using SRA toolkit
SRAtoolkit
NCBI
SRA
updated 2.3 years ago by
Ram
45k • written 5.6 years ago by
reza
▴ 300
0
votes
1
reply
724
views
genbank output incomplete with long feature name
biopython
SeqFeature
genbank
SeqIO
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
QL
• 0
0
votes
2
replies
1.0k
views
extract reference and query coordinate from bam or sam file
sam
bam
4.4 years ago by
LMoon
• 0
121,991 results • Page
651 of 2440
Recent Votes
A: Trimmomatic Error: Unable to detect quality encoding
A: Trimmomatic Error: Unable to detect quality encoding
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Comment: Tools to simulate Illumina short read sequences and ONT long reads with a refere
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: Nextflow MultiQC runs multiple times due to FASTQC zip name collisions
Answer: TMM-Normalization
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Comment: HIV NL4-3 transcriptome fasta
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Hi, Wanted to update here that full transcriptome annotations for thousands of hiv genomes (including NL4-3) are now available at https://…
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The quality of (modern, SUP basecalled, but certainly not fast basecalled) ONT sequences should be fine, especially for bacterial SNP call…
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Try the references from the following publications. https://www.nature.com/articles/s41591-024-03150-z https://www.science.org/doi/10.112…
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