Limit : all time
all time today this week this month this year
121,882 results • Page 666 of 2438
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
1.0k
views
Preparation of a matrix of expression values of RNA-seq for input data of ssGSEA
ssGSEA RNA-seq
4.4 years ago by Apprentice ▴ 190
0
votes
1
reply
4.1k
views
Is there a way to remove certain chromosomes from a GRanges Object?
GenomicRanges Package GRanges
updated 4.4 years ago by 21k • written 4.4 years ago by ▴ 110
5
votes
5
replies
4.4k
views
how to run linux code in python
shell python sh bash linux
4.4 years ago by szp770 ▴ 10
0
votes
0
replies
874
views
Job: Staff Scientist and Postdoc in Bioinformatics and Genomics @UMN
genomics RNA-seq postdoc
updated 2.5 years ago by 45k • written 4.4 years ago by ▴ 20
0
votes
0
replies
689
views
Wheat Input IDs for STRING database
PPI Wheat STRING input_ID
4.4 years ago by drishtee_barua • 0
1
vote
1
reply
1.5k
views
Colour in heatmap labels
labels colour heatmap
updated 4.4 years ago by 11k • written 4.4 years ago by • 0
0
votes
0
replies
645
views
Catalog Database to TF binding site
TFBS
4.4 years ago by Shicheng Guo ★ 9.6k
4
votes
3
replies
3.3k
views
R script does not work in snakemake
Snakemake R
4.4 years ago by lmlukoseviciute ▴ 60
0
votes
4
replies
1.3k
views
identification of catabolic genes in soil metagenome shotgun data
shotgun metagenome
updated 4.4 years ago by 3.9k • written 4.4 years ago by • 0
0
votes
4
replies
2.9k
views
How to compute exact P-values for a small data set for Kendall Correlation Matrix and implement it in the corr plot?
Corr Biostatistics Statistics R
updated 4.4 years ago by 45k • written 4.4 years ago by • 0
2
votes
2
replies
1.3k
views
Custom Database in Kraken2: how are plasmids in same fasta file as bacterial genome handled?
Kraken2 plasmid CustomDB
4.4 years ago by Raphaela ▴ 10
2
votes
4
replies
1.1k
views
How an element is accessed in a python list
Python
updated 4.2 years ago by 45k • written 4.4 years ago by • 0
0
votes
2
replies
1.2k
views
why do the header of bwa mapping sam files show [M::main_mem]
shell bwa genome chip mapping
4.4 years ago by szp770 ▴ 10
0
votes
1
reply
1.0k
views
vcf2maf produces large file after merge
vcf2maf
updated 4.4 years ago by 2.9k • written 4.4 years ago by ▴ 10
1
vote
2
replies
1.4k
views
KEGG orthology of microbiome
microbiome KO
4.4 years ago by mrashad ▴ 80
2
votes
2
replies
1.7k
views
Quick code question in TPM conversion from raw counts RNAseq
RNAseq tpm R
4.4 years ago by v.johnson ▴ 30
1
vote
4
replies
1.7k
views
Coordinates long non-coding RNAs
gtf python bedtools rna-seq hg38
4.4 years ago by luffy ▴ 130
1
vote
2
replies
1.2k
views
Adding new samples to single cell rna-seq analysis
batch scRNA-seq seurat
4.4 years ago by maria2019 ▴ 250
2
votes
1
reply
2.1k
views
Samtools reheader Numerical result out of range
samtools header bam
4.4 years ago by Medhat 9.8k
0
votes
0
replies
750
views
Tajima-Nei Distance estimate with BioPerl
DNA Perl BioPerl Tajima-Nei_Distance
4.4 years ago by mauricio.1313 • 0
1
vote
2
replies
10k
views
how to subset Seurat object by gene names
Seurat scRNA
4.4 years ago by leranwangcs ▴ 150
0
votes
1
reply
919
views
Cluster split, Galaxy Aus
galaxy galaxyaus clustersplit
updated 2.5 years ago by 45k • written 4.4 years ago by • 0
1
vote
4
replies
1.8k
views
Downloading viral database
database Virus NCBI
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
0
votes
5
replies
1.6k
views
6 follow
Exome Sequencing Data?
fastq Exome database
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
1
vote
2
replies
2.8k
views
SNP coordinates to rsID in .bim file
rsID snp plink plink1.9
updated 4.4 years ago by 36k • written 4.4 years ago by ▴ 70
0
votes
0
replies
704
views
getting residuals from dream
dream limma residuals
4.4 years ago by RNAseqer ▴ 280
2
votes
4
replies
2.6k
views
GATK GenomicsDBImport does not support GVCFs with MNPs
GATK MNPs Mutect2 GenomicsDBImport
4.4 years ago by Rodolfo Adrián • 0
0
votes
3
replies
1.1k
views
Using cBioPortal to assess gene expression data?
cBioPortal
4.4 years ago by a.basitkhan1990 ▴ 60
0
votes
1
reply
843
views
Non-european ancestry in eQTL analysis
gwas eqtl
updated 4.4 years ago by ▴ 170 • written 4.4 years ago by ▴ 90
3
votes
1
reply
996
views
Forum: Interested in benchmarks? Please take our survey!
benchmarking
4.4 years ago by Jeremy Leipzig 23k
0
votes
0
replies
842
views
struggle to plot metagene profile with bed files
plot profile metagene
4.4 years ago by Lila M ★ 1.3k
5
votes
4
replies
2.1k
views
Meaning of the column of sam file
reads position sam
updated 4.4 years ago by 166k • written 4.4 years ago by ▴ 10
1
vote
3
replies
4.8k
views
How to deal with the error for "Per Sequence GC Content" in FastQC tool?
sequencing sequence genome fastqc next-gen
updated 4.4 years ago by 153k • written 5.4 years ago by ▴ 20
1
vote
2
replies
1.2k
views
STAR index issues to the step 4
pipeline snakemake STAR mapping
4.4 years ago by aka ▴ 10
0
votes
1
reply
707
views
Output SNP data after imputation
genomic genomics snps snp imputation
updated 4.4 years ago by 2.9k • written 4.4 years ago by • 0
0
votes
3
replies
3.3k
views
How to change headers of fasta files with the help of another file (nucl_wgs.accession2taxid.gz) containing the desired names (taxID_ accession.vers…
wgs GenBank fasta bash Taxonomy
updated 4.4 years ago by 8.7k • written 4.4 years ago by • 0
13
votes
3
replies
5.5k
views
samtools/bcftools mpileup -B option: to use it or not in order to reduce the occurence of false SNPs discovery?
covid-19 mpileup bcftools snp samtools
4.4 years ago by cg1440 ▴ 60
0
votes
0
replies
890
views
How to add annotation information to a plant genome in the treatment of single-cell ATAC with Signac？
annotation Signac plant
4.4 years ago by qzLi0031 • 0
0
votes
1
reply
696
views
How to call small SVs (<50bp) from single end reads?
SNPs single-end-reads SVs
updated 4.4 years ago by 15k • written 4.4 years ago by • 0
4
votes
2
replies
2.1k
views
fastp results, per base content
fastp quality perbasecontent ubuntu
updated 4.4 years ago by 153k • written 4.4 years ago by ▴ 10
0
votes
1
reply
855
views
Each run generate different result
BSMAP WGBS
updated 4.4 years ago by 15k • written 4.4 years ago by • 0
2
votes
2
replies
1.1k
views
reformat.srun won't work
BBMAP fastq reformat.srun cellranger
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
1
vote
7
replies
3.9k
views
ARS-UCD, UMD and Btau reference SNP map files
Cattle rs position chromosome
3.7 years ago by PKW ▴ 110
0
votes
1
reply
1.8k
views
MAST differential expression with batch information
scrnaseq single-cell MAST seurat batch-effect
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 10
11
votes
7
replies
3.5k
views
Inconsistency between alignment rates of BWA-mem and bowtie2
Bowtie NGS BWA
updated 4.4 years ago by 103k • written 4.4 years ago by • 0
0
votes
1
reply
1.8k
views
Maxbin2 usage for paired end reads
binning paired-end-reads
updated 4.2 years ago by • 0 • written 4.4 years ago by ▴ 140
8
votes
3
replies
2.3k
views
BioMart servers down again...
ensembl biomart
4.4 years ago by Tai ▴ 10
2
votes
4
replies
1.2k
views
BLAST output
blast
updated 4.4 years ago by 153k • written 4.4 years ago by • 0
2
votes
1
reply
778
views
How to extract this information
gtf r rna seq galaxy
updated 4.4 years ago by 11k • written 4.4 years ago by • 0
17
votes
21
replies
20k
views
7 follow
plotting a dotplot with topGO output
RNA-Seq GO topGO dotplot clusterProfiler
updated 3.6 years ago by ▴ 790 • written 4.9 years ago by ▴ 50
121,882 results • Page 666 of 2438
Recent Votes
Answer: Fastq reads to csv - How can I make a csv with the read number of several fastq
Comment: Fastq reads to csv - How can I make a csv with the read number of several fastq
Answer: How to debug faulty BBmap clumpify command?
Comment: Automatically annotating a feature using a genbank file
Answer: combine hifiasm and hifiasm-ont assemblies.
Answer: combine hifiasm and hifiasm-ont assemblies.
Answer: Recommendations for Reference-guided de novo assembly assembly approaches or pip
Recent Locations • All
Japan, just now
Lebanon, 24 minutes ago
South Korea, 29 minutes ago
India, 31 minutes ago
Austria, 36 minutes ago
Australia, 41 minutes ago
USA, 51 minutes ago
Recent Awards • All
Popular Question to alx.alo • 0
Popular Question to Saber_J ▴ 20
Popular Question to alison.ludzki • 0
Popular Question to snaledale • 0
Popular Question to WouterDeCoster 48k
Scholar to Pierre Lindenbaum 166k
Popular Question to Matthias Zepper 5.1k
Recent Replies
Answer: Is this PCA plot correct?? by Mensur Dlakic ★ 30k
I can tell you what you already know: this result is unexpected. Nobody can tell you whether the plot is "correct" or not - it depends on w…
Answer: Strange pattern in pct_counts_mt from bin2cell deconvolved VisiumHD data by danielpintard ▴ 10
Update: take a look at the plot below ![enter image description here][1] [1]: /media/images/2a939635-9920-46b9-9b15-6028022d
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
Experiments with global changes in the RNA production usually need spike-in normalization to estimate the library sizes. Questions about th…
Comment: Best way to do protein structure guided similarity search? by Dunois ★ 2.9k
`Foldseek` perhaps? They have a server for it too: [https://search.foldseek.com/][1] . [1]: https://search.foldseek.com/
Comment: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates by GenoMax 153k
As of Sept 2025 this script is coded only for human gene symbol lookups as noted on GitHub page, with a promise to make it flexible later.
Comment: How to debug faulty BBmap clumpify command? by GenoMax 153k
> worked flawlessly on another machine If you rearranged/moved the contents of BBMap software bundle from default, it can lead to the "cla…
Answer: Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates by Thanujay S • 0
Hey! A bit late to the party! I’ve built a simple wrapper (named SESC) around biomaRt to streamline Ensembl ID conversions. It supports bo…
Comment: How to debug faulty BBmap clumpify command? by marongiu.luigi ▴ 760
It makes sense since the command worked flawlessly on another machine... Thanks
Comment: Finding RNA genes associated with X protein expression in CITE-seq Seurat object by ATpoint 89k
One way would be to make a correlation test between every pair of gene-ADT, and test for significance. Another would be to run something li…
Answer: How to debug faulty BBmap clumpify command? by Matthias Zepper 5.1k
It is trying to access the BBTools `sketch` tool that is a dependency and doesn't find it. I have almost no experience with Java, but m…
Comment: [vg giraffe] Unable to add read group to BAM file by saruman • 0
The read alignment does not produce any error. The BAM file does not include the read group. I need to run `picard AddOrReplaceReadGroups` …
Comment: Best way to do protein structure guided similarity search? by lieven.sterck 15k
Something along the line of working with HMMs: you could also consider using PSI-BLAST. (though equally non-modern like HMM searches :) )
Comment: Best way to do protein structure guided similarity search? by Joe 22k
There are tools that sort of do this with sequence information still. I would consider looking at HMM based methods for starters (`hhsuite…
Comment: Need help in Single cell proteomics data analysis by ATpoint 89k
I was assuming your table is log2 intensity as often for MS-based proteomics. I do not know this sort of data you have so I cannot comment.
Comment: Need help in Single cell proteomics data analysis by Saber_J ▴ 20
Thanks for the reply and warm reminder. This table also provides count-like data without normalization, where the values are integers. If I…
Traffic: 4137 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6