8
votes
4
replies
4.6k
views
5
votes
4
replies
1.9k
views
0
votes
2
replies
1.1k
views
0
votes
0
replies
842
views
updated 4.6 years ago by
Pierre Lindenbaum
166k
•
written 4.6 years ago by
salman_96
▴
70
0
votes
0
replies
713
views
updated 2.7 years ago by
Ram
45k
•
written 4.6 years ago by
esimonova.me
▴
30
9
votes
6
replies
4.9k
views
1
vote
4
replies
1.6k
views
3.4 years ago by
sunnykevin97
▴
1000
0
votes
2
replies
901
views
4.6 years ago by
sunnykevin97
▴
1000
0
votes
2
replies
1.7k
views
4.6 years ago by
moritz.lasse
•
0
2
votes
2
replies
1.9k
views
3
votes
5
replies
6.3k
views
0
votes
0
replies
913
views
4.6 years ago by
Physalia-courses
★
2.7k
0
votes
1
reply
1.7k
views
updated 4.6 years ago by
GenoMax
154k
•
written 4.6 years ago by
tianshenbio
▴
190
5
votes
5
replies
3.6k
views
updated 4.6 years ago by
Gordon Smyth
★
8.6k
•
written 4.6 years ago by
rishav513
▴
30
1
vote
0
replies
1.1k
views
1
vote
7
replies
2.9k
views
1
vote
0
replies
1.2k
views
updated 2.5 years ago by
Ram
45k
•
written 4.6 years ago by
Shicheng Guo
★
9.6k
0
votes
2
replies
2.1k
views
1
vote
3
replies
1.6k
views
0
votes
0
replies
877
views
2
votes
3
replies
3.3k
views
updated 4.6 years ago by
Mensur Dlakic
★
30k
•
written 4.6 years ago by
CHINMAYA
▴
10
0
votes
0
replies
799
views
3
votes
1
reply
1.1k
views
updated 4.6 years ago by
GenoMax
154k
•
written 4.6 years ago by
vm.higareda
▴
30
0
votes
3
replies
2.5k
views
4.6 years ago by
anasjamshed
▴
140
8
votes
6
replies
2.7k
views
1
vote
3
replies
1.2k
views
2
votes
2
replies
1.8k
views
4.6 years ago by
serene.s
•
0
2
votes
1
reply
2.1k
views
updated 4.6 years ago by
prasundutta87
▴
730
•
written 4.6 years ago by
Afzal
•
0
0
votes
3
replies
1.7k
views
3
votes
2
replies
6.0k
views
4.6 years ago by
sahar.salimi92
•
0
9
votes
5
replies
5.5k
views
updated 3.4 years ago by
Ram
45k
•
written 9.8 years ago by
14134125465346445
★
3.6k
13
votes
14
replies
9.4k
views
8 follow
1
vote
7
replies
4.6k
views
2
votes
1
reply
1.0k
views
updated 2.5 years ago by
Ram
45k
•
written 4.6 years ago by
Asad Bilal
▴
10
0
votes
2
replies
1.4k
views
0
votes
0
replies
1.4k
views
updated 4.6 years ago by
GenoMax
154k
•
written 4.6 years ago by
giuly.lg.95
•
0
2
votes
6
replies
2.3k
views
updated 4.6 years ago by
lieven.sterck
16k
•
written 4.6 years ago by
Rui
▴
50
0
votes
3
replies
1.1k
views
0
votes
1
reply
1.7k
views
0
votes
0
replies
877
views
0
votes
1
reply
3.0k
views
updated 4.6 years ago by
fabricio.motteran
•
0
•
written 8.2 years ago by
fanglujing
▴
60
1
vote
1
reply
1.4k
views
updated 4.6 years ago by
Pierre Lindenbaum
166k
•
written 4.6 years ago by
Sumeet
▴
10
3
votes
3
replies
1.5k
views
3
votes
2
replies
5.1k
views
updated 22 months ago by
Ram
45k
•
written 4.6 years ago by
f-rasmussen
▴
10
1
vote
2
replies
1.2k
views
4
votes
2
replies
1.6k
views
0
votes
3
replies
1.7k
views
updated 4.6 years ago by
GenoMax
154k
•
written 4.6 years ago by
Rogerio Ribeiro
▴
110
0
votes
1
reply
1.2k
views
updated 2.7 years ago by
rohitsatyam102
▴
940
•
written 4.6 years ago by
whb
▴
60
45
votes
23
replies
7.7k
views
6 follow
updated 2.8 years ago by
Ram
45k
•
written 7.7 years ago by
Devon Ryan
105k
0
votes
0
replies
1.2k
views
4.6 years ago by
Samiah
▴
10
Recent Votes
Recent Locations •
All
Bologna, 12 minutes ago
Norway, 21 minutes ago
France, 23 minutes ago
Germany, 24 minutes ago
Dublin / Ireland, 25 minutes ago
Ghent & Brussels, Belgium, 28 minutes ago
Machhagan, 36 minutes ago
Recent Awards •
All
Popular Question to
zizigolu
★
4.4k
Popular Question to
Biomed-jeh
▴
70
Popular Question to
gernophil
▴
130
Popular Question to
Lila M
★
1.3k
Popular Question to
ecSeq Bioinformatics
▴
20
Popular Question to
QX
▴
80
Recent Replies
Answer: Chip-seq analysis Diffbind
by
ATpoint
90k
I think the results are expected. a) n=2 is underpowered, for any assay and in particular for ChIP-seq which has considerable noise. b) you…
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Wu-Sheng Zhang
▴
10
Hi @arup , after changing the file name following the read length, I can process them using cellranger arc successfully. Thank you very muc…
Comment: Visualize methylation status in Pacbio Hifi read
by
cmdcolin
★
4.4k
(as the JBrowse dev) I'm glad to hear this. if you see any trouble with it feel free to let me know, I have tried to keep up to date with m…
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Wu-Sheng Zhang
▴
10
Got it! I will try to switch their name and re-run the cellranger arc. Thank you very much, @arup !
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
The barcode files with 24nt read length W71_LUNGrep2_S6_L001_R3_001.fastq.gz and W71_LUNGrep2_S6_L002_R3_001.fastq.gz should be the R2.
Comment: ID unifiying across different datasets
by
GenoMax
154k
Each database has their own method of annotation/validation. Depending on resources available there may be a lag between the databases in t…
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Wu-Sheng Zhang
▴
10
Hi @arup , thank you very much for your suggestions, and here are the results -- they seems correct. May I have your suggestions? Thank you…
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
samuel.a.odonnell
▴
640
I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case.
From what it sounds like, during th…
Comment: ID unifiying across different datasets
by
zizigolu
★
4.4k
Thanks a lot to be helpful
I’m trying to build a complete `UniProtID` to `GeneSymbol` lookup table and I’m running into a wall. I’ve alrea…
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴
20
thanks for the quick reply.
i posted the screenshot.
gatk-internally, there is still the difference using -ERC or not, priot is getting …
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
thomas.heigl.ibk
▴
20
here the igv view. showing the histogram for all samples plus the reads for one:
![enter image description here][1]
and expanded view of …
Comment: low quality data or file name swapping -- cellranger arc errors when processing
by
Arup Ghosh
3.5k
Check the read lengths to make sure the files are correct.
Comment: strong appearing variant not found by haplotypecaller in -ERC mode and deepvaria
by
Pierre Lindenbaum
166k
> Any suggestions or help you could share
please, show us an IGV screenshot of the position
GATK realign the reads locally, discards read…
Comment: Can i use orthofinder for small protein datasets and not full proteome?
by
alexandrakortsi
•
0
By sequence. Thank you for your response!
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding
by
xinguok794
▴
10
Thank you for your reply! Unfortunately, despite running YAHS with `--no-contig-ec`, the QV value of the resulting FASTA file did not impro…
Traffic: 4069 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6