Limit : all time
all time today this week this month this year
122,216 results • Page 713 of 2445
Sort: Rank
Rank Views Votes Replies
4
votes
5
replies
6.3k
views
Version history and design files for exome kits from Agilent, Roche(Nimblegen), and Illumina
exome agilent roche nimblegen illumina
updated 4.7 years ago by ▴ 210 • written 8.1 years ago by ★ 2.1k
0
votes
0
replies
866
views
Job: HIRING: Nanopore Production Specialist
genomics nanopore sequencing
updated 2.7 years ago by 45k • written 4.7 years ago by ▴ 30
5
votes
6
replies
8.1k
views
scatter plot, aov()
aov scatter-plot anova
updated 19 months ago by 45k • written 4.7 years ago by ▴ 180
3
votes
3
replies
1.8k
views
is there a kind of package like Bio::Trace::ABIF in python?
abif sanger perl python
updated 4.7 years ago by ★ 30k • written 4.7 years ago by • 0
2
votes
3
replies
1.5k
views
RNAseq analysis with deseq1, deseq2, and edgeR. Is the same number of replicates needed in each group?
rna-seq
4.7 years ago by arturo.marin ▴ 20
0
votes
0
replies
655
views
Multiple Sequencing Platforms, One Interval File?
WES sequencing GATK
4.7 years ago by jon.klonowski ▴ 210
0
votes
0
replies
747
views
possiblity of using SingleCellSignalR for bulk RNAseq data
RNA-Seq SingleCellSignalR
4.7 years ago by adR ▴ 130
1
vote
3
replies
4.2k
views
Working With Phastcons Files
galaxy
updated 4.7 years ago by 20 • written 12.6 years ago by ▴ 680
0
votes
7
replies
12k
views
GEO datasets-Single cell RNAseq analysis using seurat
RNA-Seq
updated 2.4 years ago by 166k • written 4.8 years ago by • 0
3
votes
3
replies
1.0k
views
Filtering RNAseq data of one sample from two different species
rna-seq
4.7 years ago by arturo.marin ▴ 20
20
votes
4
replies
3.0k
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
papers survey SNP
updated 2.8 years ago by 45k • written 4.7 years ago by ★ 1.5k
0
votes
0
replies
663
views
Building Human Gene Annotation File from Gene Primers
RNA-Seq alignment primer Gene Annotation
4.7 years ago by razeeebuet • 0
0
votes
0
replies
1.5k
views
Eigenstrat to VCF
VCF Eigenstrat aDNA format
4.7 years ago by sahahig469 ▴ 10
1
vote
2
replies
1.9k
views
Agilent SureSelect V5 adapters for WES
sequencing next-gen wes library
4.7 years ago by Rick P ▴ 20
0
votes
3
replies
2.1k
views
ERROR with METAL
gwas metal meta-analysis error
updated 4.7 years ago by • 0 • written 4.8 years ago by • 0
0
votes
2
replies
795
views
Use of Two Dual Indexed Adapter
sequencing
4.7 years ago by atitparajuli2018 • 0
1
vote
5
replies
1.7k
views
Survminer DataFrame creation
survminer survival Kaplan-Meier curve R
updated 4.7 years ago by 12k • written 4.8 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Correlation heatmap for ChIP-seq data: Pearson or Spearman?
ChIP-Seq correlation deeptools
4.7 years ago by Marco Pannone ▴ 810
7
votes
9
replies
3.5k
views
How do I effectively automate BLAST searches without using a local database?
BLAST Python
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 20
3
votes
0
replies
1.1k
views
News: Free Ensembl Browser and REST API virtual workshops in March
Ensembl REST-API genome-browser training workshop
updated 2.8 years ago by 45k • written 4.7 years ago by ▴ 270
1
vote
1
reply
920
views
Error: mysql table already exists! Is it safe to delete the tables in mysql manually?
MYSQL
4.7 years ago by mthm ▴ 80
0
votes
2
replies
997
views
hardware for SNV analysis
next-gen SNV HPC server traditional processing
4.7 years ago by rajeefa ▴ 10
1
vote
11
replies
3.9k
views
Segmentation fault (core dumped) error with bigWigAverageOverBed
bigWigAverageOverBed RNA-Seq
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 50
1
vote
0
replies
1.1k
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 2.7 years ago by 45k • written 4.7 years ago by 24k
0
votes
1
reply
1.2k
views
Job: PhD Project in "Systems biology approach for elucidating bacterial revival after antibiotic treatment"
PhD
updated 2.5 years ago by 45k • written 4.7 years ago by ▴ 30
0
votes
0
replies
738
views
Where can we get UMLS concept ids if I have MedDRA preferred Terms
umls meddra
updated 4.7 years ago by 154k • written 4.7 years ago by • 0
1
vote
1
reply
1.4k
views
Comparing results from two different DESeq analyes
DESeq2 RNA-Seq pair-wise analyses R
updated 4.7 years ago by 22k • written 4.7 years ago by ▴ 50
0
votes
1
reply
1.3k
views
How many INDELs and SNPs should I expect in vcf file and what the best parameters to filter false positives?
variants WES WGS
updated 4.7 years ago by 24k • written 4.7 years ago by ▴ 30
3
votes
5
replies
5.4k
views
VEP is very slow. Fork doesnt seem to work
vep annotation
4.5 years ago by nhaus ▴ 420
0
votes
0
replies
588
views
Quantify low complexity regions in DNA sequences
NGS mapping
4.7 years ago by Glubbdrubb • 0
0
votes
1
reply
1.2k
views
How do I add a GENSCAN track to the Ensembl Gene Summary
Ensembl genscan
updated 4.7 years ago by 24k • written 4.7 years ago by ▴ 70
0
votes
0
replies
888
views
How to find the location of snps in a gene, whether it is in the promoter, intron, exon or 5'UTR region?
SNP R gene genome
updated 4.7 years ago by 24k • written 4.7 years ago by ▴ 20
0
votes
0
replies
587
views
SVDetect gives "Killed: 9" when I try to run it
assembly next-gen software error
4.7 years ago by giusdalt95 ▴ 10
0
votes
0
replies
730
views
beast V2.6.3: how to add birth-death-collapse prior to beast xml config file
beast DISSECT BEAUti
4.7 years ago by Yanpeng Chen ▴ 10
0
votes
1
reply
1.3k
views
Multiple alleles in REF and ALT in VCF file
vcf allele indel bcftools vcftools
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 180
0
votes
0
replies
749
views
Polygenetic Risk scores
SNP gene
4.7 years ago by shubhamkumbhar420 ▴ 40
9
votes
6
replies
7.0k
views
Limma package, how to correct by age and sex?
microarrays limma batch-effect
updated 21 months ago by 45k • written 6.5 years ago by ▴ 30
2
votes
0
replies
996
views
Is it possible to apply limma on metabric data?
limma metabric mRNA DEG
4.7 years ago by DareDevil ★ 4.5k
0
votes
0
replies
1.2k
views
Pymol visualisation issue
pymol PLIP Protein-Ligand Interaction Profiler
4.7 years ago by amoltej ▴ 100
0
votes
0
replies
968
views
Adjustment of number of mutations of 3'UTR region for UTR length
UTR SNV RNA-Seq genome sequence
4.7 years ago by Thind amarinder ▴ 340
0
votes
3
replies
1.3k
views
Why LASTZ Align Sequences in a So Long Time
LastZ alignment
4.7 years ago by yunzhe.jiang97 • 0
0
votes
2
replies
3.9k
views
What is KEGG BRITE ?
kegg pathways metabolism
updated 4.7 years ago by ★ 1.4k • written 5.6 years ago by ▴ 70
1
vote
6
replies
2.2k
views
Plot phylogenetic tree with all ancestor nodes
phylogenetic tree R ape
4.7 years ago by AfinaM ▴ 30
6
votes
13
replies
3.5k
views
Implementation of python function
DNA python PDB
updated 4.7 years ago by 20 • written 4.8 years ago by ▴ 140
0
votes
2
replies
948
views
Need help on installing poretools
software error
4.7 years ago by dreamfeathers08 ▴ 10
0
votes
1
reply
1.2k
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 2.7 years ago by 45k • written 4.7 years ago by ★ 1.1k
2
votes
1
reply
1.3k
views
Why the result of GSEA and ssGSEA is different?
ssgsea gsea
updated 2.4 years ago by • 0 • written 4.7 years ago by ▴ 260
0
votes
0
replies
431
views
Total transcriptomics study of brain samples
Brain Tissue Nova Seq Total RNA seq
4.7 years ago by rashmi.kaul17 • 0
2
votes
7
replies
2.7k
views
NCBI eutils EFETCH only fetch elements needed (or remove abstract from response)?
efetch eutils API pubmed ncbi
4.7 years ago by chaitanya.bangera ▴ 10
0
votes
0
replies
835
views
Bootstrap support for the invalid node
bootstrap phylogeny
4.7 years ago by hlebnikovdaniil • 0
122,216 results • Page 713 of 2445
Recent Votes
Answer: How to perform GO enrichment in non-model organisms?
Comment: circos plot for genomic features
Answer: How excactly is the Q30 is calculated?
A: PCA in a RNA seq analysis
what cause poly-G from NextSeq
what cause poly-G from NextSeq
A: what cause poly-G from NextSeq
Recent Locations • All
India, just now
United States, 6 minutes ago
Austria/Vienna, 13 minutes ago
Bologna, 17 minutes ago
France, 23 minutes ago
Norway, 24 minutes ago
Germany, 30 minutes ago
Recent Awards • All
Popular Question to sahalpaladan ▴ 10
Popular Question to Amb@r85 ▴ 10
Popular Question to hello_bioinf ▴ 250
Popular Question to tacrolimus ▴ 150
Popular Question to biotrekker ▴ 110
Popular Question to zizigolu ★ 4.4k
Popular Question to Biomed-jeh ▴ 70
Recent Replies
Comment: Question about QC and scrublet by Arup Ghosh 3.5k
You can run Scrublet before filtering cells with high gene counts and compare the doublet score vs `n_counts_genes`.
Answer: How to perform GO enrichment in non-model organisms? by lieven.sterck 16k
In first instance you will as you say need to assign GOterms to your genes. eggNOG-mapper is certainly a valid approach to do this indeed. …
Comment: circos plot for genomic features by Matteo Ungaro ▴ 130
@colindaven thanks a lot! `clinker` also seems to be a nice/effective tool to do so. It happens we stuble across a work where they used `Ci…
Comment: circos plot for genomic features by colindaven 8.1k
Why not use something like Jbrowse2 instead ? https://jbrowse.org/jb2/gallery/ You can load both haplotypes, use minimap2 to create a paf …
Comment: How excactly is the Q30 is calculated? by colindaven 8.1k
This is really a question for your instrument provider. Only MGI application specialists and their bioinformaticians can really answer this…
Answer: How excactly is the Q30 is calculated? by GenoMax 154k
[**Phred quality scores**][1] have been in use since the 1990s and early days of human genome project. They were co-opted in the fastq form…
Comment: best practice for diploid variant calling by Matteo Ungaro ▴ 130
@kevin thanks I was experimenting with the following since I already pursued most of the approaches you mentioned and, in practice, they ar…
Answer: Chip-seq analysis Diffbind by ATpoint 90k
I think the results are expected. a) n=2 is underpowered, for any assay and in particular for ChIP-seq which has considerable noise. b) you…
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Wu-Sheng Zhang ▴ 10
Hi @arup , after changing the file name following the read length, I can process them using cellranger arc successfully. Thank you very muc…
Comment: Visualize methylation status in Pacbio Hifi read by cmdcolin ★ 4.4k
(as the JBrowse dev) I'm glad to hear this. if you see any trouble with it feel free to let me know, I have tried to keep up to date with m…
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Wu-Sheng Zhang ▴ 10
Got it! I will try to switch their name and re-run the cellranger arc. Thank you very much, @arup !
Answer: low quality data or file name swapping -- cellranger arc errors when processing by Arup Ghosh 3.5k
The barcode files with 24nt read length W71_LUNGrep2_S6_L001_R3_001.fastq.gz and W71_LUNGrep2_S6_L002_R3_001.fastq.gz should be the R2.
Comment: ID unifiying across different datasets by GenoMax 154k
Each database has their own method of annotation/validation. Depending on resources available there may be a lag between the databases in t…
Comment: low quality data or file name swapping -- cellranger arc errors when processing by Wu-Sheng Zhang ▴ 10
Hi @arup , thank you very much for your suggestions, and here are the results -- they seems correct. May I have your suggestions? Thank you…
Comment: Why did the QV value decrease significantly after using YAHS for HiC scaffolding by samuel.a.odonnell ▴ 640
I don't believe merqury ignores softmasked (lower case) nucleotides so I don't think that is the case. From what it sounds like, during th…
Traffic: 7114 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6