Limit : all time
all time today this week this month this year
121,919 results • Page 713 of 2439
Sort: Rank
Rank Views Votes Replies
0
votes
4
replies
1.3k
views
Identify contaminants in my transcriptomic sequences
Assembly transcriptome de-novo
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 110
0
votes
1
reply
836
views
where to download proprietary miRNA software
mirna
updated 4.6 years ago by 56k • written 4.6 years ago by • 0
0
votes
2
replies
744
views
whole genome sequencing data analysis
Assembly
updated 4.6 years ago by 20 • written 4.6 years ago by • 0
0
votes
3
replies
1.0k
views
snp list from Affymetirx microarray files
SNP Affymetrix R
4.6 years ago by avichaireich ▴ 10
0
votes
2
replies
1.0k
views
error when running "SeuratToExpressionSet"
SeuratToExpressionSet Seurat
4.6 years ago by Laven9 • 0
0
votes
1
reply
3.4k
views
GATK tool to merge INDEL with SNPs with the same set of samples
VCF GATK
updated 4.6 years ago by 20 • written 4.7 years ago by ★ 2.1k
0
votes
5
replies
1.1k
views
Pair ended samples cannot map to the genome
ChIP-Seq
4.6 years ago by SayHey • 0
0
votes
1
reply
671
views
Problem uploading reference database silva_123 for 16S V3-4 analysis
alignment
4.6 years ago by arturo.gonzales • 0
1
vote
1
reply
2.6k
views
How to interpret highly variable genes plot in Scanpy?
python single-cell RNA Seq
updated 2.7 years ago by • 0 • written 4.6 years ago by ★ 1.1k
1
vote
3
replies
2.9k
views
psmc bootstrapping help
bootstrap psmc
updated 18 months ago by • 0 • written 4.6 years ago by ▴ 50
0
votes
3
replies
4.1k
views
psmc bootstrap plotting?
R genome software error
updated 4.5 years ago by • 0 • written 7.5 years ago by ▴ 30
3
votes
3
replies
1.3k
views
Major issue with DiffBind 3?
atac-seq diffbind diffbind3 ChIP-Seq bioconductor
updated 4.6 years ago by ★ 2.1k • written 4.7 years ago by ▴ 40
0
votes
0
replies
969
views
qBLAST run and Multiple sequence alignment
XML alignment qblast sequence
updated 2.5 years ago by 45k • written 4.8 years ago by • 0
6
votes
9
replies
7.9k
views
regressing out covariate from Seurat integrated data
single-cell seurat
updated 3.7 years ago by ▴ 10 • written 4.6 years ago by ▴ 110
4
votes
2
replies
4.3k
views
How to deal with single nucleus data in Seurat
RNA-Seq seurat single nucleus RNA sequencing
updated 4.6 years ago by ★ 1.1k • written 4.9 years ago by ▴ 10
1
vote
1
reply
1.0k
views
On read sequencing libraries, the opposite strands are considered on the files? (and how are they handled on assembly?)
reads sequencing Assembly
4.6 years ago by v.berriosfarias ▴ 140
0
votes
3
replies
1.5k
views
How do you create a multiple reference genome in Hisat2?
hisat2 alignment RNA-Seq next-gen assembly
updated 4.6 years ago by 20 • written 4.7 years ago by • 0
0
votes
6
replies
2.0k
views
How to modify a BAM file to avoid double-counting of variants from overlapping PE reads?
RNA-Seq BSseq
4.6 years ago by lechu ▴ 20
0
votes
0
replies
897
views
Integration or not?
single-cell RNA sequencing seurat integration
4.6 years ago by paria ▴ 110
0
votes
2
replies
796
views
Tumor and matched normal data
wes wgs
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 120
0
votes
1
reply
2.1k
views
R KEGGREST to query and retrieve specific pathway names for kegg compound ids
keggrest R
4.6 years ago by sid5427 ▴ 20
0
votes
5
replies
1.1k
views
SNP id from Brainseq and NCBI doesn't match
SNP ncbi BrainSeq database
4.6 years ago by philosophical.raptor111 • 0
2
votes
1
reply
930
views
Getting sample IDs from dbGaP SRR?
dbgap
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 90
1
vote
0
replies
1.1k
views
Job: Post-Doctoral Position in Systems Biology & Biomedical Data Sciences (f/m/d)
RNA-Seq Python R
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 40
2
votes
0
replies
2.0k
views
Job: PhD Position in Computational Systems Immunology & Data Sciences
R RNA-Seq Python
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 40
0
votes
1
reply
1.5k
views
How to interpret logistic interaction results from plink2 output?
SNP plink GWAS interaction logistic
updated 4.6 years ago by 89k • written 5.5 years ago by • 0
0
votes
2
replies
1.5k
views
Arrow crashes during second iteration
genome polish arrow gcpp
4.6 years ago by elcortegano ▴ 210
0
votes
2
replies
1.4k
views
How to analyse lncRNA
RNA-Seq
updated 4.6 years ago by ▴ 510 • written 4.6 years ago by • 0
0
votes
2
replies
1.5k
views
Merging overlapping mates in a BAM / SAM file into one read
RNA-Seq
4.6 years ago by lechu ▴ 20
0
votes
1
reply
1.4k
views
List of good CNV detection methods?
CNV algorithm
4.6 years ago by 860101959 ▴ 10
1
vote
5
replies
2.4k
views
Size difference using gunzip-cat-gzip and zcat
RNA-Seq sequencing
updated 4.6 years ago by 45k • written 4.6 years ago by ▴ 140
6
votes
7
replies
2.2k
views
How to record Seurat DE analysis efficiently?
R RNA-Seq rna-seq
4.6 years ago by Pratik ★ 1.1k
8
votes
4
replies
17k
views
Seurat "FindMarkers" and "FindallMarkers" v.s. Scanpy "rank_genes_groups"
scRNA Seurat R single-cell Scanpy
updated 4.6 years ago by ▴ 50 • written 5.1 years ago by ▴ 20
0
votes
0
replies
524
views
is it ok for two subspecies sharing one HI-C data ?
assembly
updated 4.6 years ago by 20 • written 4.7 years ago by • 0
4
votes
8
replies
6.3k
views
How can I convert from bed to bed12 format?
BED bed12
updated 4.6 years ago by ▴ 130 • written 7.4 years ago by ▴ 610
0
votes
1
reply
1.4k
views
Beagle conform-gt error
Beagle conformgt imputation java tomped
4.6 years ago by kstafford32 • 0
5
votes
4
replies
1.9k
views
Differential Network analysis
wgcna scalefree networks scale free
updated 4.6 years ago by ▴ 40 • written 4.6 years ago by ▴ 30
2
votes
7
replies
8.5k
views
Samtools command not found
error
4.6 years ago by julianneradford ▴ 20
1
vote
7
replies
1.7k
views
Exprimental design for DESeq2 or edger
deseq2 edger
4.6 years ago by zizigolu ★ 4.4k
0
votes
0
replies
745
views
High Throughput Screening (HTS) Data Statistical Analysis R Package
High Throughput Screening Statistical Analysis
4.6 years ago by Hamidreza Hashemi • 0
0
votes
4
replies
963
views
Question: should we integrate samples from different study groups?
RNA-Seq scRNA-seq
updated 4.6 years ago by 13k • written 4.6 years ago by • 0
4
votes
12
replies
3.8k
views
TMM normalized TPM
RNA-Seq
4.6 years ago by firestar ★ 1.7k
1
vote
0
replies
2.0k
views
Has anyone tried "star --readFilesManifest manifest.tsv" and then "featureCounts --byReadGroup" to quickly get gene quantification for multiple sampl…
RNA-Seq STAR featureCounts
4.6 years ago by Xianjun ▴ 310
2
votes
2
replies
2.0k
views
not able to run Fastqc in Centos server
fastqc genomics
updated 4.6 years ago by 20 • written 5.8 years ago by ▴ 1000
0
votes
0
replies
1.1k
views
Using DiffBind for ATACseq data with Multiple Conditions
diffbind ATAC-seq
4.6 years ago by blaura.bioinfo • 0
0
votes
3
replies
1.1k
views
Searching for Cell Type Database -- Similar to GeneCards
database
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 10
2
votes
2
replies
1.9k
views
Bowtie 2 warning when outputting unmapped reads
alignment bowtie2
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 10
0
votes
4
replies
2.6k
views
Understanding GATK evaluation metrics
next-gen snp GATK metrics
4.4 years ago by geneart$$ ▴ 50
0
votes
1
reply
1.0k
views
Hisat2 file error
RNA-Seq
updated 3.6 years ago by 45k • written 4.6 years ago by • 0
0
votes
8
replies
2.7k
views
Adding a gene to a GTF file
RNA-Seq
4.6 years ago by science_lizard ▴ 20
121,919 results • Page 713 of 2439
Recent Votes
A: read.table does not read in all rows!
A: read.table does not read in all rows!
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Recent Locations • All
Germany, 1 minute ago
Brno, 1 minute ago
Bologna, 19 minutes ago
Perth, Australia, 21 minutes ago
Tanzania, 28 minutes ago
Italy, 43 minutes ago
India, 43 minutes ago
Recent Awards • All
Popular Question to Denis ▴ 320
Teacher to Pierre Lindenbaum 166k
Scholar to saruman ▴ 10
Popular Question to Luca Arbore ▴ 10
Popular Question to David Langenberger 11k
Popular Question to akshay ▴ 10
Scholar to colindaven 7.9k
Recent Replies
Comment: miRNA low mapping ratings by Ant ▴ 50
The first one it's the results from Cutadapter and the second block from miRDeep2.
Comment: miRNA low mapping ratings by Ant ▴ 50
Thanks for the reply, when running: cutadapt -a AACTGTAGGCACCATCAAT -M 30 -o example_trimmed.fastq.gz data/xxx.fastq.gz, the sequence le…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by GenoMax 153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by san96 ▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file by saruman ▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error by GenoMax 153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error by tatsispolychronis • 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error by GenoMax 153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence by Joe 22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings by i.sudbery 22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
Traffic: 3541 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6