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1,000 results • Page
3 of 20
Sort: Rank
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Votes
Replies
5
votes
4
replies
1.3k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 10 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
59k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.2k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 3 months ago by
benformatics
3.9k • written 18 months ago by
buhbs
▴ 30
0
votes
2
replies
991
views
Forum:
Best Phd Programs in Usa ( Computational Biology)
computational-biology
drug-design
updated 17 months ago by
Ram
43k • written 19 months ago by
AleLs
• 0
4
votes
5
replies
1.4k
views
6 follow
Forum:
Which Bioinformatics Master's degree is better?
career
masters
updated 11 months ago by
Ram
43k • written 18 months ago by
stelakarayani7
• 0
2
votes
1
reply
871
views
Forum:
Package is not available (for R version XXX)? Manually download and install R packages
installation
package
R
updated 16 months ago by
colindaven
6.4k • written 18 months ago by
JC
▴ 30
3
votes
6
replies
1.1k
views
Forum:
How to become a moderator and other ways of contributing to Biostars
meta
biostars
updated 11 months ago by
Ram
43k • written 19 months ago by
iraun
6.2k
2
votes
3
replies
952
views
Forum:
Experiences with different cloud computing resources / providers
cloud
pipeline
rna-seq
alignment
updated 19 months ago by
Jeremy Leipzig
22k • written 19 months ago by
mjd79
▴ 10
19
votes
13
replies
2.6k
views
8 follow
Forum:
Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 20 months ago by
Rob
6.5k • written 20 months ago by
tsomakiank
▴ 40
8
votes
13
replies
2.9k
views
8 follow
Forum:
Commercial software for genomics / NGS / bioinformatics
NGS
software
genomics
updated 20 months ago by
artem barski
• 0 • written 20 months ago by
liorglic
★ 1.4k
4
votes
4
replies
1.4k
views
Forum:
Bioinformatics analogies
Bioinformatics
updated 20 months ago by
Istvan Albert
100k • written 20 months ago by
melissachua90
▴ 70
2
votes
4
replies
1.2k
views
Forum:
Is low N in-vivo research a blind spot for RNA-seq?
statistics
metascience
power
sample-size
updated 13 months ago by
Ram
43k • written 20 months ago by
telroyjatter
▴ 230
2
votes
4
replies
1.0k
views
Forum:
strand specific data
strand
DNA
RNA
specific
coding
20 months ago by
upasana
• 0
3
votes
0
replies
821
views
Forum:
Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology
RTK
IC50
TKI
database
20 months ago by
LauferVA
4.2k
7
votes
14
replies
2.4k
views
7 follow
Forum:
Why isn't GWAS used in oncology?
gwas
association
oncology
studies
somatic
cancer
updated 20 months ago by
LChart
3.9k • written 21 months ago by
Kermit
▴ 90
4
votes
4
replies
1.4k
views
Forum:
Cloud Computing Services available?
resources
Cloud-Computing
updated 17 months ago by
Ram
43k • written 22 months ago by
carlopecoraro2
★ 2.5k
2
votes
7
replies
1.3k
views
Forum:
Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R
plot
rna-seq
count
updated 21 months ago by
Ram
43k • written 21 months ago by
ali
▴ 20
6
votes
3
replies
2.3k
views
Forum:
Best formats for storing large amounts of data for random access
file-formats
databases
updated 21 months ago by
Matthias Zepper
4.6k • written 21 months ago by
i.sudbery
19k
0
votes
1
reply
634
views
Forum:
Add an intercept column to a bed file
plink
intercept
bed
updated 21 months ago by
ATpoint
82k • written 21 months ago by
kai.yang2
• 0
4
votes
2
replies
1.9k
views
Forum:
Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology
teaching
updated 16 months ago by
Ram
43k • written 21 months ago by
LauferVA
4.2k
0
votes
0
replies
747
views
Forum:
Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq
normalization
RPGC
Spikein
Normalization
22 months ago by
goddy93
• 0
3
votes
1
reply
698
views
Forum:
Would an automated NGS analytics platform help research?
ngs
data-analysis
updated 22 months ago by
Ram
43k • written 22 months ago by
Mandar Sahasrabuddhe
• 0
5
votes
2
replies
1.6k
views
Forum:
Skills for industry career in bioinformatics
industry
updated 22 months ago by
rpolicastro
13k • written 22 months ago by
m.engalla
▴ 10
9
votes
6
replies
1.3k
views
Forum:
Programming languages in industry
programming
language
updated 22 months ago by
Medhat
9.7k • written 22 months ago by
m.monikus
▴ 30
2
votes
6
replies
1.3k
views
Forum:
Getting the best of RNA-Seq
RNA-Seq
isoform
gene
expression
22 months ago by
Antonio R. Franco
★ 5.1k
1
vote
0
replies
801
views
Forum:
Not all Over Representation Analyses are the same!
clusterProfiler
Analysis
fisher
hypergeometric
ORA
Pathway
22 months ago by
Francesco
▴ 20
3
votes
2
replies
852
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 10 months ago by
Ram
43k • written 22 months ago by
BioInfoBeginner
▴ 50
0
votes
0
replies
756
views
Forum:
Best practices for merging vcfs with different positions + different samples?
vcf
bcftools
genotypes
updated 16 months ago by
Ram
43k • written 22 months ago by
pabe
▴ 30
24
votes
6
replies
5.0k
views
6 follow
Forum:
Awk in Bioinformatics
perl
awk
shell
updated 17 months ago by
Ram
43k • written 5.7 years ago by
Shicheng Guo
★ 9.4k
7
votes
8
replies
1.6k
views
Forum:
Can we lock posts related to merging vcf files?
vcf
updated 17 months ago by
Ram
43k • written 23 months ago by
4galaxy77
2.8k
0
votes
0
replies
650
views
Forum:
Bioinformatics for understanding cancer and other diseases
cancer
omics
updated 16 months ago by
Ram
43k • written 23 months ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
2.5k
views
Forum:
What counts as a valid biological replicate in single cell RNAseq?
statistics
biological
replicates
scRNA-seq
updated 23 months ago by
benformatics
3.9k • written 23 months ago by
david.ferenbach
• 0
3
votes
3
replies
948
views
Forum:
Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany
PostDoc
updated 23 months ago by
Jean-Karim Heriche
27k • written 23 months ago by
German.M.Demidov
★ 2.9k
0
votes
0
replies
378
views
Forum:
Can Bioinformatics be used in developing a product?
product
company
business
updated 16 months ago by
Ram
43k • written 23 months ago by
user366312
▴ 20
0
votes
2
replies
1.1k
views
Forum:
Bioinformatics algorithm tutorials in C++/C
protein
gene
genome
updated 23 months ago by
Michael
54k • written 23 months ago by
sunnykevin97
▴ 980
34
votes
11
replies
9.4k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 21 months ago by
Ram
43k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
6
votes
8
replies
3.1k
views
Forum:
PC build for Nanopore data analysis
python
PC
pipeline
nanopore-sequencing
23 months ago by
stan.aanhane
▴ 30
2
votes
3
replies
940
views
Forum:
What is difference between Bioinformatics and Data Science?
Data-Science
updated 16 months ago by
Ram
43k • written 23 months ago by
Ssonia
▴ 30
2
votes
2
replies
946
views
Forum:
Project ideas
project-ideas
updated 23 months ago by
Michael
54k • written 23 months ago by
nivedha
• 0
0
votes
0
replies
583
views
Forum:
Beagle5 imputation accuracy
beagle5
DR2
imputation
impute2
impute-info
24 months ago by
ch333
• 0
1
vote
6
replies
1.1k
views
Forum:
Bioinformatics Software Developer job interview steps and what to expect?
interview
software-development
updated 22 months ago by
Ram
43k • written 2.0 years ago by
d
• 0
2
votes
2
replies
789
views
Forum:
What sequencing method is the most efficient for identifying genes driving rare diseases?
NGS
GWAS
WGS
updated 16 months ago by
Ram
43k • written 2.0 years ago by
ehsanmofidichelan
• 0
5
votes
5
replies
1.1k
views
Forum:
Best book introducing R programming?
coding
R
2.0 years ago by
Scottie
▴ 10
4
votes
6
replies
1.5k
views
Forum:
How relevant are read numbers in FastQ headers for paired reads?
header
fastq
number
read
2.0 years ago by
Matthias Zepper
4.6k
0
votes
0
replies
625
views
Forum:
commonly-used bioinformatics pipeline
Galaxy
updated 16 months ago by
Ram
43k • written 2.0 years ago by
anasjamshed
▴ 120
0
votes
0
replies
567
views
Forum:
Master's topic in Bioinformatics
Bio-informatique
2.0 years ago by
Badji Oumar
• 0
13
votes
15
replies
3.4k
views
8 follow
Forum:
Biostar under spam attack - restrictions added to post content and title
meta
biostars
updated 14 months ago by
Ram
43k • written 8.8 years ago by
Istvan Albert
100k
0
votes
1
reply
793
views
Forum:
Retrieve SCCM data for client software distribution serviceNow
training
servicenow
online
2.0 years ago by
hkrtrainings408
• 0
47
votes
24
replies
6.5k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 16 months ago by
Ram
43k • written 6.5 years ago by
Michael
54k
5
votes
8
replies
2.7k
views
Forum:
SQL-why do we need it in Bioinformatics ?
SQL
Programming
updated 16 months ago by
Ram
43k • written 2.1 years ago by
iibrams07
▴ 10
1,000 results • Page
3 of 20
Recent Votes
Comment: Downloading full alignments from Pfam
Answer: Segmentation error while using a tool
What is the best way to rank genes for GSEA?
What is the best way to rank genes for GSEA?
Comment: Raw counts using stringtie
Comment: Raw counts using stringtie
Answer: GRCh38.gmap file
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Recent Replies
Answer: Association study using SNP data
by
drajangirija
• 0
Hi Matthew, Thank you very much for your inputs. I am working with Neogen genotyping data, which includes GC values less than 0.15.
Comment: Downloading full alignments from Pfam
by
bef1
• 0
I tried contacting Pfam, they replied that indeed there is an issue on their side with the full alignments, which should be repaired in the…
Comment: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Expe
by
Mensur Dlakic
★ 27k
Don't know about others, but I would never contact someone about potential employment based only on their interests and with zero knowledge…
Comment: The GDC Legacy Archive is retiring soon.
by
Zhenyu Zhang
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If you are talking about methylation idat files, they were all migrated from legacy to the data portal. If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
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These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy. Are you sure tha…
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
• 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
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by
Expert
▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error
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Ruqaiya
• 0
This the tool still problematic?
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
Thank you for the advice, i'll keep that in mind.
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