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414 results • Page 5 of 9
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786
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Forum: What are the 10 most exciting developments on the horizon in precision medicine?
precision-medicine
updated 11 months ago by 43k • written 4.6 years ago by 4.2k
3
votes
2
replies
6.2k
views
Forum: Best book for learning Next-Generation Sequencing Data Analysis?
ngs
updated 12 months ago by 43k • written 6.2 years ago by ★ 1.2k
21
votes
15
replies
2.1k
views
9 follow
Forum: Working abroad without a PhD
career
updated 11 months ago by 43k • written 4.6 years ago by ★ 1.4k
13
votes
4
replies
1.3k
views
Forum: The shortcoming of shiny app in building webserver
R shiny webserver
updated 11 months ago by 43k • written 4.7 years ago by ▴ 120
1
vote
3
replies
903
views
Forum: The pStacks module of Stacks has been removed?
software-error
updated 11 months ago by 43k • written 4.7 years ago by ▴ 20
3
votes
3
replies
1.1k
views
Forum: Large Multi-omics Project -- Dev Approach
snp RNA-Seq sequencing
updated 11 months ago by 43k • written 4.7 years ago by ▴ 10
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 11 months ago by 43k • written 5.4 years ago by ▴ 10
12
votes
4
replies
1.6k
views
Forum: Bioinformatics and biotechnology market in future.
genome next-gen
updated 11 months ago by 43k • written 4.7 years ago by • 0
3
votes
0
replies
1.1k
views
Forum: Good books on application of Machine Learning in Bioinformatics
book machine-learning
updated 11 months ago by 43k • written 4.8 years ago by ▴ 180
0
votes
2
replies
1.3k
views
Forum: What should I choose between a thesis and a project for masters in bioinformatics?
thesis project
updated 11 months ago by 43k • written 4.8 years ago by ▴ 70
4
votes
0
replies
1.2k
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 11 months ago by 43k • written 4.8 years ago by ▴ 600
39
votes
21
replies
14k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 11 months ago by 43k • written 5.6 years ago by 8.6k
1
vote
2
replies
955
views
Forum: What Are The Big Problems/Current Trends In Proteomics?
proteomics sequencing
updated 11 months ago by 43k • written 4.8 years ago by • 0
3
votes
4
replies
3.0k
views
6 follow
Forum: Links for forums or discussion groups about machine learning, aging, genomics and artificial intelligence?
genome
updated 12 months ago by 43k • written 6.3 years ago by ▴ 50
0
votes
4
replies
2.2k
views
Forum: Multiple Sequence Alignment Applications
snp
updated 11 months ago by 43k • written 4.8 years ago by • 0
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
2
votes
5
replies
1.5k
views
Forum: Looking for co-author with Bioinformatics background for paper using Machine Learning in Biology
neural-networks lncRNA RNN FEELnc
updated 11 months ago by 43k • written 5.7 years ago by ▴ 20
14
votes
10
replies
2.2k
views
Forum: WGBS alignment with BitMapperBS
BitMapperBS bismark
updated 11 months ago by 43k • written 4.8 years ago by ★ 9.4k
13
votes
6
replies
1.2k
views
Forum: To Cloud or Not to Cloud - Privacy implications of genetic data sharing
security diagnostics DNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by 11k
0
votes
1
reply
864
views
Forum: Tools and data for plant proteins
alignment sequencing
updated 11 months ago by 43k • written 4.9 years ago by • 0
14
votes
5
replies
7.0k
views
Forum: Seurat vs Monocle
R RNA-Seq next-gen single-cell
updated 11 months ago by 43k • written 4.9 years ago by 3.2k
5
votes
3
replies
878
views
Forum: price of MSI detection by NGS for 1 person
next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 20
3
votes
2
replies
753
views
Forum: Application suggestions for slackbot
slack
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.1k
11
votes
13
replies
4.6k
views
6 follow
Forum: NGS Data storage solutions for small organisations or big labs
big-data HTS storage NGS metagenomics
updated 11 months ago by 43k • written 4.9 years ago by ▴ 830
1
vote
5
replies
1.4k
views
Forum: PhD: Research interest or better program?
PhD
updated 11 months ago by 43k • written 4.9 years ago by • 0
11
votes
5
replies
4.8k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 11 months ago by 43k • written 4.9 years ago by ▴ 110
12
votes
14
replies
2.5k
views
8 follow
Forum: Recovering bam files after unknown deletion in the storage
photorec bam sequencing
written 4.9 years ago by ▴ 70
1
vote
1
reply
1.1k
views
Forum: Companies and salary for a PhD in Drug Design in Asia
salary drug-design
updated 11 months ago by 43k • written 4.9 years ago by • 0
1
vote
1
reply
1.7k
views
Forum: Free Bioinformatics Training Resources (for non-bioinformaticians)
RNA-Seq
updated 11 months ago by 43k • written 4.9 years ago by ▴ 340
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 10
3
votes
1
reply
997
views
Forum: Recommend papers: automated vs manual downstream analysis
downstream-analysis reproducibility
updated 11 months ago by 43k • written 5.0 years ago by ▴ 110
0
votes
0
replies
737
views
Forum: Survey for job context
survey interview
updated 11 months ago by 43k • written 5.0 years ago by • 0
4
votes
0
replies
3.5k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 11 months ago by 43k • written 5.0 years ago by 11k
11
votes
5
replies
1.5k
views
Forum: What bioinformatic training?
training RNA-Seq illumina
updated 11 months ago by 43k • written 5.0 years ago by ▴ 150
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 43k • written 5.0 years ago by ★ 9.4k
0
votes
1
reply
942
views
Forum: An idea for a project in ML
ML matlab machine-learning data-science
updated 11 months ago by 43k • written 5.0 years ago by • 0
10
votes
4
replies
5.8k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 11 months ago by 43k • written 5.0 years ago by • 0
3
votes
7
replies
1.0k
views
Forum: Construct a small computing server for GWAS Analysis
assembly
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
1
vote
1
reply
702
views
Forum: Whither my badges?
meta
updated 11 months ago by 43k • written 5.0 years ago by ★ 1.9k
2
votes
3
replies
862
views
Forum: What are the major types of choices that affect an analysis?
reproducibility
updated 11 months ago by 43k • written 5.0 years ago by 22k
5
votes
2
replies
1.3k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 11 months ago by 43k • written 5.0 years ago by 5.3k
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
113
votes
53
replies
7.2k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
authorship career-development
updated 11 months ago by 43k • written 5.1 years ago by ▴ 170
1
vote
3
replies
979
views
Forum: Poorly designed "omics" experiment
RNA-Seq next-gen ChIP-Seq
updated 11 months ago by 43k • written 5.1 years ago by ▴ 100
129
votes
38
replies
8.3k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics
updated 11 months ago by 43k • written 5.1 years ago by 100k
1
vote
2
replies
1.3k
views
Forum: GENEWIZ RNA-seq quality feedback
RNA-Seq QC sequencing
updated 11 months ago by 43k • written 5.1 years ago by ▴ 20
1
vote
2
replies
996
views
Forum: Homologous sequences problematic in RNA-seq
Homology genome RNA-Seq
updated 11 months ago by 43k • written 5.1 years ago by ▴ 10
0
votes
1
reply
829
views
Forum: Computer science grad student looking for advice/suggestions for master's thesis.
SNP gene genome sequencing
updated 11 months ago by 43k • written 5.1 years ago by • 0
11
votes
8
replies
1.7k
views
Forum: Bioinformatics cores pricing model
pricing-models core Bioinformatics-services
updated 11 months ago by 43k • written 5.2 years ago by ▴ 160
414 results • Page 5 of 9
Recent Votes
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
Genome Visualization Tools
Comment: Genome Visualization Tools
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
A: Best de novo assembler for insect genome ?
Comment: sci-RNA-seq
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Recent Replies
Comment: Genome Visualization Tools by dlera.lozano ▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat by Mensur Dlakic ★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by Ram 43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Ram 43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file by Prawesh • 0
thanks, it's working now.
Comment: Genome Visualization Tools by GenoMax 142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file by Trivas ★ 1.8k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R by jared.andrews07 ★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran by GenoMax 142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content by noodle ▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
Comment: Where to get the following bed file? by wyuan37 • 0
Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file? by wyuan37 • 0
Thanks! Super helpful.
Answer: Post-imputation QC for input into GWAS analyses by LauferVA 4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data by GenoMax 142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object by ntsopoul ▴ 60
does this work with a single .bed file?
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