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1,000 results • Page
5 of 20
Sort: Views
Rank
Views
Votes
Replies
4
votes
9
replies
2.1k
views
Legend and hap files for imputation with 38 build
reference
38build
impute
imputation
15 days ago by
anna
▴ 20
0
votes
2
replies
2.1k
views
How map the gene position to the genomic position.
vcf
sequence
SNP
genome
updated 10 months ago by
Ram
43k • written 6.7 years ago by
misbahabas
▴ 70
0
votes
0
replies
2.1k
views
Mgrep Source Code
mgrep
updated 10 months ago by
Ram
43k • written 11.4 years ago by
Will
4.5k
8
votes
10
replies
2.1k
views
PyWGCNA
WGCNA
11 months ago by
yoshifumimiya
▴ 40
0
votes
2
replies
2.1k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ggbio
gviz
hg19
updated 3 months ago by
Ram
43k • written 7.2 years ago by
maden.sean
▴ 20
0
votes
1
reply
2.1k
views
hisat2 error: Symbol not found ... libstdc++.6.dylib
hisat2
libstdc
RNA-Seq
dylib
updated 11 months ago by
Ram
43k • written 4.0 years ago by
axolootle
• 0
3
votes
6
replies
2.1k
views
Biopython TimeExceptionError how to handle?
biopython
entrez
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Xylanaser
▴ 80
0
votes
2
replies
2.1k
views
CWL :File created on fly by one step of a workflow as input to another step
Common-Workflow-Language
CWL
updated 8 months ago by
Ram
43k • written 7.1 years ago by
akashmdr90
• 0
0
votes
5
replies
2.1k
views
Batch effect correction & normalization after training/test split for gene expression data
RNA-seq
batch-effect
normalization
updated 28 days ago by
Ram
43k • written 21 months ago by
mmitra
▴ 60
0
votes
0
replies
2.1k
views
betweenLaneNormalization and calcNormFactors in RUVs
Differential-Gene-Expression
RUVs
RNA-Seq
R
updated 5 weeks ago by
Ram
43k • written 6.9 years ago by
manish20072013
▴ 10
6
votes
12
replies
2.1k
views
Help with error in cellranger
Cellranger
updated 12 months ago by
GenoMax
142k • written 12 months ago by
Chris
▴ 280
2
votes
2
replies
2.1k
views
Plotting Allele Frequencies
variant-analysis
updated 7 months ago by
Ram
43k • written 4.8 years ago by
kristina.mahan
▴ 170
1
vote
3
replies
2.1k
views
psmc bootstrapping help
bootstrap
psmc
updated 7 weeks ago by
xuby963
• 0 • written 3.2 years ago by
truebeliever24
▴ 50
0
votes
2
replies
2.0k
views
AttributeError: module 'collections' has no attribute 'Hashable'
Spades
updated 5 months ago by
jiyoung
▴ 20 • written 13 months ago by
Hayler Edu
▴ 40
3
votes
26
replies
2.0k
views
6 follow
STAR Genome index Error
STAR
updated 7 months ago by
Ram
43k • written 7 months ago by
Prasanna
• 0
0
votes
2
replies
2.0k
views
Using infercnv R package
infercnv
r
Seurat
updated 7 months ago by
Ram
43k • written 20 months ago by
j.jacob1
• 0
3
votes
8
replies
2.0k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 11 months ago by
Ram
43k • written 5.5 years ago by
nagendranp1991
• 0
4
votes
8
replies
2.0k
views
How to extract promoter sequences from a plant draft genome?
promoter
genome
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Kumar
▴ 120
0
votes
0
replies
2.0k
views
Interspecies Transition Of Transcription Factor Binding Sites
literature
updated 10 months ago by
Ram
43k • written 11.3 years ago by
biorepine
★ 1.5k
0
votes
0
replies
2.0k
views
NOISeq Batch Correction to RNA-seq data
Batch-effect
RNA-Seq
ARSyNseq
limma
NOISeq
updated 26 days ago by
Ram
43k • written 7.0 years ago by
endikavarela
• 0
0
votes
2
replies
2.0k
views
Easy go enrichment tool for working with subnetworks
enrichment
subnetworks
updated 10 months ago by
Ram
43k • written 9.7 years ago by
Samgoldman97
• 0
0
votes
2
replies
2.0k
views
How to handle NaN in emmax Kinship matrix?
GWAS
SNP
updated 11 months ago by
Thu
• 0 • written 6.1 years ago by
CWesse
• 0
0
votes
0
replies
2.0k
views
Convert Sentrix probe ids (e.g., 5570546) to Illumina probe id (ILMN_...)
probe
sentrix
illumina
updated 10 months ago by
Ram
43k • written 7.8 years ago by
randalljellis
▴ 90
0
votes
4
replies
2.0k
views
Error while doing EdgeR fro miRNA Seq analysis
EdgeR
miRNASeq
updated 10 months ago by
Ram
43k • written 5.7 years ago by
nivya.james2016
• 0
8
votes
5
replies
2.0k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 7 months ago by
Ram
43k • written 2.6 years ago by
A_heath
▴ 160
2
votes
3
replies
2.0k
views
SnpEff html and .vcf file result are not matching
vcf
SNP
snpeff
updated 10 months ago by
Ram
43k • written 6.8 years ago by
misbahabas
▴ 70
0
votes
7
replies
2.0k
views
CIBERSORTx error: 'x' must be an array of at least two dimensions
matrix
CIBERSORTx
signature
updated 6 months ago by
kkj3083
• 0 • written 22 months ago by
Jie
• 0
2
votes
1
reply
2.0k
views
How do I apply a patch to hg38?
reference
human
freeze
hg38
patch
updated 11 months ago by
Jeremy Leipzig
22k • written 6.6 years ago by
imperialcommando117
• 0
1
vote
6
replies
2.0k
views
How to run CallPeaks()
signac
8 months ago by
Chris
▴ 280
0
votes
4
replies
2.0k
views
dual_synteny_plotter error in MCScanx toolkit.
software-error
MCScanX
updated 10 months ago by
Ram
43k • written 5.8 years ago by
annapragada.harika
▴ 10
5
votes
8
replies
2.0k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq
DNA-Seq
contamination
QC
updated 7 months ago by
Jingjingzhang
• 0 • written 3.7 years ago by
from the mountains
▴ 230
0
votes
0
replies
2.0k
views
ExomeCNV floating CNV result
EXPANDS
CNV
ExomeCNV
updated 10 months ago by
Ram
43k • written 8.0 years ago by
sosal
▴ 10
6
votes
3
replies
2.0k
views
Gene network with expression data
network
RNA-Seq
updated 10 months ago by
Ram
43k • written 6.5 years ago by
nirvana
▴ 30
0
votes
0
replies
2.0k
views
Correcting batch effect from known variables in RnBeads using Combat
Combat
450k
methylation
RnBeads
batch-effect
updated 26 days ago by
Ram
43k • written 7.2 years ago by
rahel14350
▴ 40
0
votes
0
replies
2.0k
views
batch effect in radseq
radseq
batch-effect
SNP
updated 26 days ago by
Ram
43k • written 7.5 years ago by
oselm
▴ 50
0
votes
2
replies
2.0k
views
How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?
ddRAD
next-gen
Stacks
DBR
updated 12 months ago by
Ram
43k • written 6.7 years ago by
beausoleilmo
▴ 580
0
votes
1
reply
1.9k
views
Analysis of text alignment viewer of samtools
samtools
updated 10 months ago by
Ram
43k • written 7.9 years ago by
viswanathrana29
▴ 20
1
vote
0
replies
1.9k
views
High in group variability RNA seq
rna-seq
updated 8 months ago by
Ram
43k • written 7.9 years ago by
Biogeek
▴ 470
0
votes
0
replies
1.9k
views
Tools To Determine Intersections Between Complex Sv In Vcfs?
vcf
sv
updated 11 months ago by
Ram
43k • written 10.8 years ago by
14134125465346445
★ 3.6k
4
votes
8
replies
1.9k
views
Hello, I have differential ATAC-seq from control and diseased cells (H3K27ac mark as chromatin mark) and wondering how to call enhancers using ROSE …
super-enhancers
Enhancers
updated 3 months ago by
jared.andrews07
★ 16k • written 4 months ago by
Manhezz
• 0
0
votes
1
reply
1.9k
views
Get pairwise scores from alignment without re-aligning?
multiple-sequence-alignment
bit-score
alignment
updated 12 months ago by
Ram
43k • written 7.4 years ago by
mpd
• 0
0
votes
8
replies
1.9k
views
Chromosome Location of Sequence in Fasta File using Biopython
biopython
python
updated 11 months ago by
Ram
43k • written 4.5 years ago by
muhammad.khizerkiet
• 0
0
votes
4
replies
1.9k
views
Tools to detect CNV for NGS-mtDNA
mtDNA
NGS
updated 11 months ago by
Ram
43k • written 5.7 years ago by
NB
▴ 960
4
votes
6
replies
1.9k
views
Failure in installing the ggtree, enrichplot, and ggtree (Bioconductor packages )
Bioconductor
updated 10 months ago by
GenoMax
142k • written 10 months ago by
applepie
• 0
0
votes
1
reply
1.9k
views
error when running local chlorop1.1
chlorop
updated 7 months ago by
Ram
43k • written 7.9 years ago by
gerrychang1985
▴ 40
1
vote
7
replies
1.9k
views
Filtering a VCF by "IMP" flag in INFO with bcftools
vcf
bcftools
updated 10 months ago by
Ram
43k • written 19 months ago by
Vanish007
▴ 40
1
vote
5
replies
1.9k
views
BLAST: overflow error
BLAST
updated 5 months ago by
GenoMax
142k • written 2.0 years ago by
antoinefelden
▴ 60
0
votes
2
replies
1.9k
views
Fourfold degenerate codons in VCF File
vcf
genome
updated 11 months ago by
Ram
43k • written 5.4 years ago by
crippa.to
• 0
0
votes
3
replies
1.9k
views
AvgExpression error in seurat: invalid name for slot of class “Assay5”: check.matrix
10X-genomics
heatmap
single-cell
updated 9 months ago by
Ram
43k • written 9 months ago by
AW
▴ 10
0
votes
3
replies
1.9k
views
demultiplex PacBio fastq file
next-gen-sequencing
sequence
updated 11 months ago by
Ram
43k • written 4.0 years ago by
ieie
▴ 10
1,000 results • Page
5 of 20
Recent Votes
A: how to combine RNA seq data from 4 lanes
Answer: Cannot install bwa-mem2 via conda
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Comment: Downsample BAM file to specific amount of reads
Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
Answer: Long reads and fixing of mate-pair issues/marking duplicates with samtools
Answer: genome finishing
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Comment: Add stats to boxplot in R
by
Ghada
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Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
Comment: Using ggplotly in R
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Again, this is not particularly difficult to do with [plotly itself](https://plotly.com/r/line-and-scatter/#adding-color-and-size-mapping) …
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by
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142k
If you only have supplementary alignments then they may be caused by reasons mentioned here --> https://www.biostars.org/p/308853/ I did no…
Comment: Cannot install bwa-mem2 via conda
by
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161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
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100k
The problem is because you are running the ARM based conda. Bioinformatics software is compiled for Intel based CPUs only. Uninstall that …
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[https://www.biostars.org/p/9559284/][1] you could try this [1]: https://www.biostars.org/p/9559284/
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it's also true that now I only have one pod5 folder, thanks anyway for clarifying the focus of the issue. Yes, they are probably secondary …
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I'm unsure. I will say that looking for [ normalize](https://github.com/search?q=repo%3Atanaylab%2Fmetacells%20normalize&type=code) among t…
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by
Pierre Lindenbaum
161k
> Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the c…
Answer: genome finishing
by
nd48
▴ 20
What is the input? Do you have short reads (e.g. illumina 100bp paired reads)? As mentioned already, you already have the consensus i.e. c…
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by
biology_inform
▴ 50
I've been exploring different visualization tools like Circos and shinyCircos, and I've noticed that they require an input file similar to …
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by
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If you want to plot global accessibility, maybe you would like to plot the ATAC "signal", instead of specific peaks. In a very general mann…
Comment: Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
by
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161k
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161k
> I haven't been able to figure out how to generate this plot. show us what you tried and the error messages
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by
njornet
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I think this is the answer but I can't find in the tags info about primary and secondary alignments. I've only found in the flag that the s…
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