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27
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0
replies
8.1k
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Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
26
votes
8
replies
4.5k
views
Forum: Quantum Bioinformatics ahead?
algorithms quantum-computing
updated 13 months ago by 43k • written 8.0 years ago by 54k
26
votes
6
replies
2.2k
views
Forum: Could Biostar Have Polls Or Rating Systems For Analysis Tools Or Databases
next-gen database meta
updated 14 months ago by 43k • written 11.6 years ago by ▴ 380
26
votes
17
replies
2.3k
views
9 follow
Forum: GalaxyProject, why and why not?
galaxy sequencing pipeline
updated 13 months ago by 43k • written 8.2 years ago by ▴ 50
26
votes
10
replies
4.4k
views
6 follow
Forum: Why not merging?
fastq sequencing
updated 12 months ago by 43k • written 6.8 years ago by 16k
26
votes
27
replies
2.2k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 4 months ago by ★ 6.0k • written 4 months ago by ▴ 40
26
votes
8
replies
1.7k
views
7 follow
Forum: Reasons to refuse to give support
design rna-seq statistics
updated 11 months ago by 43k • written 5.5 years ago by 8.3k
26
votes
12
replies
7.5k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 12 months ago by ▴ 10 • written 10.5 years ago by ▴ 50
26
votes
6
replies
5.6k
views
9 follow
Forum: Making a living with bioinformatics
career
updated 23 months ago by 43k • written 6.0 years ago by ▴ 150
25
votes
7
replies
1.9k
views
6 follow
Forum: What Are The Best Bioinformatics Course Materials [2020]
course teaching
updated 12 months ago by 43k • written 3.4 years ago by 8.7k
25
votes
39
replies
5.9k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 14 months ago by 43k • written 10.9 years ago by ▴ 440
25
votes
11
replies
3.8k
views
6 follow
Forum: Site Use Guidelines
meta biostars Guidelines
updated 23 days ago by 43k • written 14.6 years ago by 100k
25
votes
9
replies
6.7k
views
Forum: Storage Solutions For Genomic Research Centers
data parallel genomics
updated 14 months ago by 43k • written 10.7 years ago by ▴ 140
25
votes
10
replies
2.1k
views
Forum: Seeking for Scientific Crticism
criticism career
updated 13 months ago by 43k • written 8.1 years ago by ▴ 270
24
votes
16
replies
2.3k
views
6 follow
Forum: #saveNCBI - it's a joke, right?
ncbi
updated 22 months ago by 43k • written 8.3 years ago by 11k
24
votes
11
replies
4.3k
views
7 follow
Forum: In 2022 is Perl and Ruby programming languages still useful for bioinformatics?
ruby perl
updated 2.4 years ago by 8.6k • written 2.4 years ago by • 0
24
votes
6
replies
5.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 17 months ago by 43k • written 5.7 years ago by ★ 9.4k
24
votes
13
replies
5.7k
views
6 follow
Forum: The ethics of sci-hub
paywall open-science journals publications
updated 13 months ago by 43k • written 7.8 years ago by 47k
24
votes
26
replies
2.2k
views
6 follow
Forum: Organizing a Bioinformatics Conference ?
meeting conference
updated 12 months ago by 43k • written 6.5 years ago by 161k
24
votes
9
replies
2.5k
views
Forum: Fun things to do with my exome
exome-sequencing SNP
updated 14 months ago by 43k • written 9.6 years ago by ▴ 130
24
votes
15
replies
11k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 14 months ago by 43k • written 9.7 years ago by ▴ 70
24
votes
15
replies
2.0k
views
Forum: Users of 0 rep required to read etiquette guides before first post?
meta
updated 13 months ago by 43k • written 8.2 years ago by 13k
23
votes
18
replies
2.6k
views
9 follow
Forum: How to imagine the future of bioinformatics?
bioinformatics
updated 13 months ago by 43k • written 7.6 years ago by ▴ 570
23
votes
15
replies
3.7k
views
6 follow
Forum: Explaining purpose of using FastQC to a colleague
fastqc
updated 13 months ago by 43k • written 7.3 years ago by ▴ 810
23
votes
15
replies
2.6k
views
10 follow
Forum: I'm in a Masters of Bioinformatics Program and wanted to ask everyone for advice
career
updated 13 months ago by 43k • written 8.2 years ago by ▴ 20
23
votes
6
replies
13k
views
Forum: List Of File Formats Used In Bioinformatics?
bioinformatics
updated 10 months ago by 43k • written 11.6 years ago by ▴ 140
23
votes
11
replies
2.9k
views
12 follow
Forum: Best way to spend money to learn Bioinformatics
bioinformatics
updated 13 months ago by 43k • written 8.3 years ago by ▴ 80
23
votes
6
replies
5.9k
views
Forum: Bioinformatics online course
course teaching
updated 18 months ago by 43k • written 9.0 years ago by ▴ 150
23
votes
7
replies
1.6k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 14 months ago by 43k • written 3.3 years ago by ▴ 60
23
votes
18
replies
1.5k
views
Forum: Versioning of Blast DB and Reproducible Research
database blast reproducible-research
updated 11 months ago by 43k • written 4.0 years ago by ▴ 60
23
votes
11
replies
2.1k
views
9 follow
Forum: file and directory management best practices
file-management
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
23
votes
15
replies
5.1k
views
6 follow
Forum: On the usage of Golang
assembly next-gen alignment
updated 11 months ago by 43k • written 5.6 years ago by ▴ 80
23
votes
9
replies
2.3k
views
Forum: Thoughts on Bioinformatics and programming
programming
updated 13 months ago by 43k • written 8.2 years ago by 13k
23
votes
13
replies
2.9k
views
8 follow
Forum: Planning A Change To The Way User Reputation/Rankings Are Computed. Comments/Feedback Sought.
biostars
updated 15 months ago by 43k • written 10.8 years ago by 100k
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 43k • written 3.9 years ago by 11k
22
votes
11
replies
3.4k
views
Forum: ExpressionSet in the age of tidyverse
expressionset R bioconductor
updated 12 months ago by 43k • written 6.0 years ago by 13k
22
votes
5
replies
2.8k
views
Forum: PhD course or workshop in statistics for RNA-seq analysis
RNA-Seq workshop course statistics
updated 20 months ago by 43k • written 8.7 years ago by ▴ 250
22
votes
6
replies
2.8k
views
7 follow
Forum: What's the correct way to withdraw a published database/server ?
database practices
updated 14 months ago by 43k • written 10.1 years ago by 161k
22
votes
10
replies
5.4k
views
Forum: Publishing Bioinformatics Results
subjective conference
updated 14 months ago by 43k • written 10.9 years ago by ★ 1.1k
22
votes
11
replies
3.4k
views
Forum: Why Didn'T Biostar Join Stack Exchange?
meta biostars
updated 15 months ago by 43k • written 10.1 years ago by ▴ 900
22
votes
10
replies
3.7k
views
6 follow
Forum: The Myriad Ruling - What Do Gene Patents Now Mean To Bioinformatics?
patents
updated 15 months ago by 43k • written 12.8 years ago by ▴ 310
22
votes
14
replies
9.2k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 14 months ago by 43k • written 9.9 years ago by ▴ 30
22
votes
16
replies
7.2k
views
9 follow
Forum: Large Tables In Supplementary Pdf In Journal Articles
publication
updated 14 months ago by 43k • written 10.9 years ago by ▴ 520
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
22
votes
8
replies
5.9k
views
Forum: Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
web-server blast-database
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.5k
22
votes
15
replies
9.0k
views
11 follow
Forum: RNASeq user experience with Novogene?
RNA-Seq
updated 11 months ago by 43k • written 5.9 years ago by ▴ 80
22
votes
2
replies
6.5k
views
Forum: Cole Trapnell of TopHat and CuffLinks uses this
uses-this
updated 14 months ago by 43k • written 9.5 years ago by 100k
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.1 years ago by ▴ 50
21
votes
11
replies
2.6k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 14 months ago by ▴ 150
21
votes
24
replies
3.3k
views
Forum: From DEGs of a non-model animals to statistically significantly enriched pathways
pathway-enrichment GO RNA-Seq KEGG
updated 13 months ago by 43k • written 7.7 years ago by ★ 3.4k
1,000 results • Page 5 of 20
Recent Votes
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
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Recent Replies
Comment: solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* err by GenoMax 142k
> INPUT FILE error: could not open input file /geneInfo.tab Based on the error it appears that the input file you are providing could not …
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 20
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 20
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 20
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
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