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1,000 results • Page
2 of 20
Sort: Votes
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Votes
Replies
13
votes
7
replies
5.5k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 23 months ago by
Ram
41k • written 9.3 years ago by
rbagnall
★ 1.8k
13
votes
9
replies
2.4k
views
7 follow
News:
Inviting NEW Biostars moderators to join Biostars slack channel
slack
moderator
7 weeks ago by
GenoMax
136k
13
votes
2
replies
3.0k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 9 months ago by
Ram
41k • written 11.2 years ago by
Istvan Albert
99k
13
votes
8
replies
2.6k
views
News:
NCBI is going to eliminate GI identifiers
ncbi
GI
updated 7 months ago by
Ram
41k • written 7.7 years ago by
Anima Mundi
★ 2.9k
12
votes
2
replies
1.4k
views
News:
Free online Ensembl course, now with a fixed sign-up link
ensembl
course
training
updated 7 months ago by
Ram
41k • written 6.8 years ago by
Emily
23k
12
votes
4
replies
1.9k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Personalised-Medicine
Nanopore
updated 6 months ago by
Ram
41k • written 5.5 years ago by
kzkedzierska
▴ 290
12
votes
0
replies
3.2k
views
News:
Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi
eutils
updated 9 months ago by
Ram
41k • written 11.0 years ago by
Chris Maloney
▴ 360
12
votes
7
replies
3.7k
views
News:
Welcome Ensembl REST with more endpoints!
ensembl
rest-api
updated 8 months ago by
Ram
41k • written 9.1 years ago by
Denise CS
★ 5.2k
12
votes
17
replies
3.8k
views
6 follow
News:
A programming language for living cells [Cello]
dna
sequence
research
language
updated 7 months ago by
Ram
41k • written 7.6 years ago by
Sukhi Singh
11k
12
votes
8
replies
6.9k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion
RNA-seq-bias
updated 8 months ago by
Ram
41k • written 9.4 years ago by
support
▴ 640
12
votes
3
replies
2.3k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC
open-source
updated 7 months ago by
Ram
41k • written 7.7 years ago by
Philipp Bayer
8.1k
12
votes
8
replies
3.3k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
updated 9 months ago by
Ram
41k • written 10.4 years ago by
David Langenberger
10k
11
votes
1
reply
2.7k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 16 months ago by
Ram
41k • written 7.3 years ago by
David Langenberger
10k
11
votes
13
replies
2.9k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance
Ensembl
updated 7 months ago by
Ram
41k • written 7.3 years ago by
Ben_Ensembl
★ 2.3k
11
votes
1
reply
4.1k
views
News:
GATB will provide developer support via Biostar
minia
dsk
gatb
updated 22 months ago by
Ram
41k • written 9.5 years ago by
Rayan Chikhi
★ 1.5k
11
votes
11
replies
1.6k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
updated 6 months ago by
Ram
41k • written 5.0 years ago by
carlopecoraro2
★ 2.4k
11
votes
25
replies
5.6k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 months ago by
Ram
41k • written 8.2 years ago by
DCGenomics
▴ 330
11
votes
0
replies
3.2k
views
News:
BWA 0.7.11 is out, supports ALT contigs
BWA
updated 8 months ago by
Ram
41k • written 8.9 years ago by
Devon Ryan
104k
11
votes
9
replies
7.4k
views
News:
NovaSeq quality analysis
sequencing
updated 6 months ago by
Ram
41k • written 6.4 years ago by
Brian Bushnell
19k
11
votes
2
replies
1.4k
views
News:
ASA discusses limitations of p-values what are the alternatives?
statistics
p-value
updated 7 months ago by
Ram
41k • written 7.7 years ago by
dariober
14k
11
votes
2
replies
3.6k
views
News:
Coursera: Computational Molecular Evolution
course
updated 9 months ago by
Ram
41k • written 10.5 years ago by
Pierre Lindenbaum
158k
11
votes
2
replies
2.3k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 23 months ago by
Ram
41k • written 9.3 years ago by
Emily
23k
11
votes
1
reply
2.0k
views
News:
Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop
Assembly
RNA-Seq
updated 7 months ago by
Ram
41k • written 7.5 years ago by
David Langenberger
10k
10
votes
17
replies
3.1k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
updated 7 months ago by
Ram
41k • written 7.0 years ago by
Laura
★ 1.8k
10
votes
2
replies
3.2k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 23 months ago by
Ram
41k • written 9.2 years ago by
Pierre Lindenbaum
158k
10
votes
7
replies
2.2k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 10 months ago by
Ram
41k • written 8.5 years ago by
ugly.betty77
★ 1.1k
10
votes
4
replies
852
views
News:
Good morning
good
morning
updated 14 months ago by
Istvan Albert
99k • written 14 months ago by
Kevin Blighe
86k
10
votes
0
replies
2.9k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs
conference
updated 9 months ago by
Ram
41k • written 10.7 years ago by
okko.clevert
▴ 240
10
votes
4
replies
2.5k
views
News:
Ensembl 77 is out
ensembl
updated 22 months ago by
Ram
41k • written 9.2 years ago by
Emily
23k
10
votes
0
replies
2.0k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer
mutations
TCGA
RNA-seq
cancer-driver
updated 6 months ago by
Ram
41k • written 5.9 years ago by
lsp03yjh
▴ 850
10
votes
1
reply
3.0k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web
ucsc
updated 9 months ago by
Ram
41k • written 9.9 years ago by
Pierre Lindenbaum
158k
10
votes
4
replies
1.1k
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 8 months ago by
kng
▴ 30 • written 9 months ago by
David Langenberger
10k
10
votes
1
reply
1.9k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq
RNA-Seq
NGS
updated 7 months ago by
Ram
41k • written 6.8 years ago by
David Langenberger
10k
10
votes
4
replies
1.6k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
updated 6 months ago by
Ram
41k • written 4.9 years ago by
David Langenberger
10k
10
votes
0
replies
3.3k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 15 months ago by
Ram
41k • written 8.1 years ago by
fairley
▴ 100
10
votes
7
replies
2.5k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
2.2 years ago by
vimalkvn
▴ 320
9
votes
4
replies
2.2k
views
7 follow
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by
Ram
41k • written 2.3 years ago by
chen
★ 2.5k
9
votes
3
replies
3.2k
views
News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 9 months ago by
Ram
41k • written 9.9 years ago by
Pierre Lindenbaum
158k
9
votes
5
replies
2.9k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 22 months ago by
Ram
41k • written 9.2 years ago by
Sean Davis
26k
9
votes
0
replies
2.1k
views
News:
Commercial advertising on Biostars
meta
biostars
advertising
updated 8 months ago by
Ram
41k • written 9.2 years ago by
Istvan Albert
99k
9
votes
4
replies
3.6k
views
News:
Conference Announcement - Camda 2013
conference
classification
updated 9 months ago by
Ram
41k • written 10.9 years ago by
okko.clevert
▴ 240
9
votes
4
replies
1.4k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 6 months ago by
Ram
41k • written 5.8 years ago by
Laura
★ 1.8k
9
votes
3
replies
4.7k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 5 months ago by
Ram
41k • written 4.2 years ago by
alserg
▴ 860
9
votes
5
replies
3.5k
views
News:
SAMTOOLS 1.4 released
samtools
updated 6 months ago by
Ram
41k • written 6.7 years ago by
Pierre Lindenbaum
158k
9
votes
5
replies
10k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
biostars
online-course
updated 9 months ago by
Ram
41k • written 6.3 years ago by
Istvan Albert
99k
9
votes
6
replies
2.0k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 10 months ago by
Ram
41k • written 8.5 years ago by
HG
★ 1.2k
9
votes
5
replies
8.5k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
updated 9 months ago by
Ram
41k • written 11.0 years ago by
wchknudt
▴ 50
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 23 months ago by
Ram
41k • written 9.3 years ago by
rtliu
★ 2.2k
8
votes
1
reply
1.6k
views
News:
Clustered `nr` database is now available for web blast @NCBI
nr
blast
updated 21 months ago by
Mensur Dlakic
★ 25k • written 22 months ago by
GenoMax
136k
8
votes
0
replies
1.7k
views
News:
Upcoming Workshop: Introduction to R in Biology
workshop
R
updated 7 months ago by
Ram
41k • written 6.8 years ago by
David Langenberger
10k
1,000 results • Page
2 of 20
Recent Votes
How to make a survival plot for a gene between High expression and low expression samples?
Comment: bwa mem hangs after a few thousand reads
bwa mem hangs after a few thousand reads
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
Answer: Generate Read counts from bam file
Comment: Generate Read counts from bam file
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Recent Replies
Answer: Where is the index command?
by
Michael
53k
There is a ready-made package for samtools, simply do apt install samtools Also, your screenshot shows you are using the root account…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴ 170
Use option `-v` with value of 4 or above to help diagnose the issue: `-v INT` Control the verbose level of the output. This option has not…
Comment: bwa mem hangs after a few thousand reads
by
tshtatland
▴ 170
Cross-posted here: [sequence alignment - bwa mem hangs after a few thousand reads - Bioinformatics Stack Exchange](https://bioinformatics.s…
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT
by
tw_140
• 0
Thank you, I really appreciate your insight! I will look into the dropouts I have.
Answer: Generate Read counts from bam file
by
NextGenSeek
• 0
Are you analysing RNA or DNA heteroplasmy levels?
Comment: What type of cancer did they study in this paper?
by
GenoMax
136k
Perhaps the exact cancer type is not what is important. Looks like they are [**all solid tumors**][1] with a baseline sample and one after …
Comment: p-value combination methods
by
i.sudbery
18k
edgeR *is* an NB-GLM. The input to NB-GLMs, including edgeR and DESeq is read counts from each sample.
Answer: What type of cancer did they study in this paper?
by
jared.andrews07
★ 16k
Cutaneous or ocular melanoma. It's from [this paper](https://aacrjournals.org/cancerimmunolres/article/10/2/162/678013/NKG7-Is-a-T-cell-Int…
Comment: p-value combination methods
by
sehriban.buyukkilic
• 0
its output of edgeR. I'm asking for input of NB-GLM? what should be input of it?
Comment: How do I download a list of genes involved in cellular metabolism (in humans) ba
by
el24
▴ 40
Hi @pratik, Thanks for the helpful solution above. I'm working on a similar task in Mouse species and noticed the CTD database is human-spe…
Comment: Match variants for allele frequency, LD score, and other features
by
Jautis
▴ 520
Trying to bump this
Comment: p-value combination methods
by
i.sudbery
18k
The parameters you have here are the *output* of an NB-GLM, not the input to an NB-GLM (most likely edgeR?)
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
by
ATpoint
78k
Please provide data as dput(), not via any random dropbox, that could be anything (also malware, theoretically). If log transformation crea…
Comment: Extracting chimeric reads from mapping
by
doggie
• 0
Hi Pierre, so does samjdk support single-end reads for extracting chimeric reads? I've aligned my virus to the human reference, sorted the …
Comment: How can I adjust Y-axis scale when making relative abundance box plot ?
by
dthorbur
▴ 870
You can try `scale_y_sqrt()` instead if you don't like the look of the log10 transformation. As an aside, it doesn't look like your fill va…
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