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1,000 results • Page
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13
votes
7
replies
5.1k
views
News:
Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten
Human-genome
Fastq
next-gen
updated 14 months ago by
Ram
37k • written 8.5 years ago by
rbagnall
★ 1.8k
13
votes
2
replies
2.6k
views
News:
A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
News
encode
updated 14 months ago by
Ram
37k • written 10.4 years ago by
Istvan Albert
96k
12
votes
2
replies
1.2k
views
News:
Free online Ensembl course, now with a fixed sign-up link
course
free
ensembl
training
News
5.9 years ago by
Emily
23k
12
votes
0
replies
3.1k
views
News:
Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi
eutils
bioinformatics
News
updated 10.2 years ago by
Istvan Albert
96k • written 10.2 years ago by
Chris Maloney
▴ 360
12
votes
4
replies
1.6k
views
News:
#NGSchool2018 summer school in bioinformatics
NGSchool
Nanopore
Personalised Medicine
News
4.6 years ago by
kzkedzierska
▴ 290
12
votes
8
replies
6.3k
views
News:
rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
RNA-seq-bias
News
rRNA-depletion
updated 15 months ago by
Ram
37k • written 8.6 years ago by
support
▴ 640
12
votes
3
replies
2.1k
views
News:
Google Summer of Code and Open Bioinformatics Foundation is looking for students
open source
job
Forum
News
updated 4.0 years ago by
ravi.eshwari
▴ 10 • written 6.9 years ago by
Philipp Bayer
7.7k
12
votes
7
replies
3.2k
views
News:
Welcome Ensembl REST with more endpoints!
rest-api
News
ensembl
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Denise CS
★ 5.2k
12
votes
8
replies
2.9k
views
News:
'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq
rna
binding
mapping
News
9.6 years ago by
David Langenberger
9.8k
12
votes
17
replies
3.1k
views
6 follow
News:
A programming language for living cells [Cello]
dna
language
research
sequence
News
6.8 years ago by
Sukhi Singh
11k
11
votes
1
reply
1.9k
views
News:
Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Assembly
RNA-Seq
Workshop
Bioinformatics
News
6.7 years ago by
David Langenberger
9.8k
11
votes
0
replies
5.5k
views
News:
Top N Reasons To Do A Ph.D. Or Post-Doc In Bioinformatics/Computational Biology
bioinformatics
News
10.5 years ago by
Istvan Albert
96k
11
votes
2
replies
3.4k
views
News:
Coursera: Computational Molecular Evolution
News
updated 9.7 years ago by
Jordan
★ 1.2k • written 9.7 years ago by
Pierre Lindenbaum
152k
11
votes
0
replies
3.1k
views
News:
BWA 0.7.11 is out, supports ALT contigs
BWA
News
8.1 years ago by
Devon Ryan
102k
11
votes
1
reply
3.9k
views
News:
GATB will provide developer support via Biostar
minia
dsk
gatb
updated 12 months ago by
Ram
37k • written 8.7 years ago by
Rayan Chikhi
★ 1.5k
11
votes
11
replies
1.2k
views
8 follow
News:
Python Data Visualization Course. Last 3 spots left
next-gen
News
updated 4.2 years ago by
JohnBlue81
▴ 300 • written 4.2 years ago by
carlopecoraro2
★ 2.2k
11
votes
25
replies
4.9k
views
15 follow
News:
Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
News
updated 4 months ago by
Ram
37k • written 7.4 years ago by
DCGenomics
▴ 320
11
votes
1
reply
2.6k
views
News:
NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq
training
NGS
workshop
updated 6 months ago by
Ram
37k • written 6.5 years ago by
David Langenberger
9.8k
11
votes
2
replies
1.2k
views
News:
ASA discusses limitations of p-values what are the alternatives?
statistics
p-value
News
6.9 years ago by
dariober
14k
11
votes
2
replies
2.1k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 13 months ago by
Ram
37k • written 8.5 years ago by
Emily
23k
11
votes
13
replies
2.4k
views
News:
Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Ensembl
Maintenance
News
6.4 years ago by
Ben_Ensembl
★ 2.2k
10
votes
2
replies
3.0k
views
News:
Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq
bioconductor
updated 13 months ago by
Ram
37k • written 8.4 years ago by
Pierre Lindenbaum
152k
10
votes
7
replies
1.9k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 17 days ago by
Ram
37k • written 7.7 years ago by
ugly.betty77
★ 1.1k
10
votes
0
replies
3.1k
views
News:
1000 Genomes data on GRCh38
1000Genomes
GRCh38
alts
alignment
updated 5 months ago by
Ram
37k • written 7.3 years ago by
fairley
▴ 100
10
votes
17
replies
2.5k
views
7 follow
News:
Tell us what you think of the ENA browser?
ena
News
updated 13 months ago by
predeus
★ 1.8k • written 6.2 years ago by
Laura
★ 1.8k
10
votes
1
reply
1.8k
views
News:
Run on 1st Berlin Summer School in NGS Data Analysis
RNA-Seq
DNA-Seq
NGS
data analysis
News
6.0 years ago by
David Langenberger
9.8k
10
votes
4
replies
569
views
News:
Good morning
good
morning
updated 5 months ago by
Istvan Albert
96k • written 5 months ago by
Kevin Blighe
84k
10
votes
1
reply
2.9k
views
News:
Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
ucsc
web
News
updated 9.0 years ago by
Mary
11k • written 9.0 years ago by
Pierre Lindenbaum
152k
10
votes
4
replies
1.4k
views
News:
3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS
RNA-Seq
DNA-Seq
News
4.1 years ago by
David Langenberger
9.8k
10
votes
7
replies
1.6k
views
News:
Linux for Biologists e-book (free to read online)
linux
python
galaxy
conda
virtual-machine
16 months ago by
vimalkvn
▴ 310
10
votes
0
replies
2.7k
views
News:
Cfp: Camda 2013 Challenge: Big Data In Life Sciences
conference
ngs
News
9.8 years ago by
okko.clevert
▴ 240
10
votes
4
replies
2.3k
views
News:
Ensembl 77 is out
ensembl
updated 12 months ago by
Ram
37k • written 8.4 years ago by
Emily
23k
10
votes
0
replies
1.8k
views
News:
Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
RNA-seq
TCGA
Pan-Cancer
mutations
cancer driver
News
4.3 years ago by
lsp03yjh
▴ 850
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 14 months ago by
Ram
37k • written 8.5 years ago by
rtliu
★ 2.2k
9
votes
5
replies
3.2k
views
News:
SAMTOOLS 1.4 released
samtools
News
5.9 years ago by
Pierre Lindenbaum
152k
9
votes
3
replies
3.0k
views
News:
New Human Genome Assembly (Grch38) Released
human
genome
assembly
News
9.1 years ago by
Pierre Lindenbaum
152k
9
votes
0
replies
2.0k
views
News:
Commercial advertising on Biostars
biostars
advertising
News
updated 12 months ago by
Ram
37k • written 8.4 years ago by
Istvan Albert
96k
9
votes
5
replies
9.5k
views
8 follow
News:
Online course: Learn Bioinformatics in 100 hours
online course
biostar
News
updated 5.4 years ago by
lucilepain
• 0 • written 5.5 years ago by
Istvan Albert
96k
9
votes
4
replies
3.3k
views
News:
Conference Announcement - Camda 2013
conference
classification
News
10.0 years ago by
okko.clevert
▴ 240
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 17 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
9
votes
3
replies
4.3k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
News
3.0 years ago by
alserg
▴ 780
9
votes
5
replies
2.7k
views
News:
The NIH Software Discovery Index | We invite your comments
NIH
software-catalog
updated 12 months ago by
Ram
37k • written 8.3 years ago by
Sean Davis
26k
9
votes
9
replies
6.7k
views
News:
NovaSeq quality analysis
sequencing
News
5.6 years ago by
Brian Bushnell
18k
9
votes
5
replies
8.1k
views
News:
A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg
api
News
updated 10.2 years ago by
Manu Prestat
4.1k • written 10.2 years ago by
wchknudt
▴ 50
9
votes
4
replies
1.2k
views
News:
Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
News
4.9 years ago by
Laura
★ 1.8k
8
votes
3
replies
1.4k
views
News:
fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 17 months ago by
GenoMax
125k • written 17 months ago by
chen
★ 2.4k
8
votes
0
replies
1.7k
views
News:
Please help! IGB grant and survey
igb
ChIP-Seq
RNA-Seq
genome
updated 9 months ago by
Ram
37k • written 8.0 years ago by
Ann
★ 2.3k
8
votes
4
replies
1.5k
views
News:
supporting vg users on biostars
vg
graph
vgteam
genome
News
variation
updated 7 weeks ago by
colindaven
4.4k • written 3.4 years ago by
Erik Garrison
★ 2.3k
8
votes
3
replies
1.6k
views
News:
Impact of outdated gene annotations on pathway enrichment analysis
david
go
ontology
pathway
enrichment
News
6.4 years ago by
pld
5.0k
8
votes
0
replies
2.6k
views
News:
Plos Computational Biology: Translational Bioinformatics
tutorial
News
updated 9.9 years ago by
Istvan Albert
96k • written 9.9 years ago by
Medhat
9.5k
1,000 results • Page
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Recent Votes
Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalization?
A: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
C: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
C: Using RPK counts as DESeq2 input
Answer: how to split multi-fasta file into single fasta file named by header
A: How To Split A Multiple Fasta
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
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Recent Replies
Comment: fastqc: Per base sequence content
by
GenoMax
125k
If the library was made using tagmentation then you will see that pattern. Flag warnings on FastQC do not immediately indicate that the da…
Answer: What type of database does gnomAD use?
by
Matthias Zepper
2.9k
I suppose there are multiple? Queries via Hail are very likely run against a [Matrix Table][1], but the web application likely uses a diffe…
Comment: What type of database does gnomAD use?
by
Pierre Lindenbaum
152k
> I have my own data, so I would like to try to create my own type of exome aggregation database, and the idea was to try to replicate gnom…
Answer: What type of database does gnomAD use?
by
Pierre Lindenbaum
152k
Google Cloud SDK https://github.com/broadinstitute/gnomad-browser/tree/main/deploy , but previous versions used mongodb https://github.com/…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
I don't think the `cutreeDynamic` function will work very well with a distance matrix calculated from pearson correlation values: `as.matri…
Comment: Clustering and dynamic tree cutting
by
harish
• 0
These are differentially expressed genes, which are around 15K genes from a total of 30 K genes. Then I follow the clustering protocol as g…
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
I solved the issue with using bowtie. But now I am experiencing this issue; > Error in makeGRangesFromDataFrame(., seqinfo = genomeinfo, k…
Comment: Protein protein interactions
by
Peerzada
• 0
Sir, How much time does this server take to give output for 1 pair of proteins as I have submitted several hours ago and it still shows ru…
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
by
Frederik
• 0
Thanks alot :)
Comment: Is it possible to do bedtools multicov across the entire genome?
by
amy__
▴ 50
Amazing, thank you so much! BW, Amy
Answer: Is it possible to do bedtools multicov across the entire genome?
by
GenoMax
125k
`mosdepth` ([**LINK**][1]) is an excellent/fast alternative. [1]: https://github.com/brentp/mosdepth
Answer: Index with unmasked or masked in HISAT2
by
GenoMax
125k
Use `top level` file. See [**README**][1] more information about other files you are referring to. [1]: https://ftp.ebi.ac.uk/en…
Answer: Is it possible to do bedtools multicov across the entire genome?
by
Nicolas Rosewick
10k
Simply use then `bedtools genomecov` with `-d` parameter : https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
Answer: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
by
GenoMax
125k
Programs do not use all the threads/cores all the time. They will do so during appropriate part of the analysis. As long as you have enable…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
Help me to understand. Is this a clustering analysis of differentially expressed genes or an unsupervised clustering analysis (eg WGCNA)?
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