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658 results • Page
1 of 14
Sort: Votes
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Votes
Replies
276
votes
39
replies
164k
views
29 follow
Tutorial:
How to download raw sequence data from GEO/SRA
fastq
SRA
bam
GEO
updated 5 days ago by
Ram
38k • written 8.6 years ago by
Obi Griffith
20k
251
votes
36
replies
30k
views
27 follow
Forum:
How Do You Manage Your Files & Directories For Your Projects ?
project-management
file-management
updated 6 days ago by
Ram
38k • written 12.9 years ago by
Pierre Lindenbaum
153k
138
votes
42
replies
20k
views
22 follow
Forum:
Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
meta
updated 2 days ago by
Vincent Laufer
★ 2.5k • written 9.8 years ago by
Whetting
★ 1.6k
75
votes
22
replies
49k
views
17 follow
How To Download All Sra Samples At Once ?
geo
sra
updated 6 days ago by
Ram
38k • written 9.1 years ago by
biorepine
★ 1.5k
58
votes
23
replies
12k
views
11 follow
Tool:
sra-explorer : find SRA and FastQ download URLs in a couple of clicks
fastq
SRA
updated 6 days ago by
Ram
38k • written 4.1 years ago by
Phil Ewels
★ 1.1k
49
votes
28
replies
25k
views
12 follow
Trimming A Fastq File Representing Rna-Seq Data
fastq
RNA-seq
updated 2 days ago by
Ram
38k • written 11.0 years ago by
Varun Gupta
★ 1.2k
47
votes
4
replies
9.8k
views
How do experienced people look for full reference genomes?
reference-genome
fasta
updated 5 days ago by
Ram
38k • written 8.8 years ago by
John Smith
▴ 320
33
votes
8
replies
32k
views
9 follow
ClusterProfiler : What is GeneRatio and BgRatio?
clusterProfiler
updated 11 hours ago by
Rene
• 0 • written 6.4 years ago by
ZheFrench
▴ 500
29
votes
14
replies
7.9k
views
7 follow
How To Download All The Introns From Ensembl
ensembl
fasta
intron
updated 5 days ago by
Ram
38k • written 11.6 years ago by
Anima Mundi
★ 2.9k
26
votes
4
replies
7.6k
views
How To Download All The Introns From Ucsc
fasta
intron
assembly
ucsc
updated 5 days ago by
Ram
38k • written 11.3 years ago by
Anima Mundi
★ 2.9k
23
votes
14
replies
3.5k
views
7 follow
Which Of The 2011 Nar Database Submissions Are Fully Accessible?
web-service
updated 5 days ago by
Ram
38k • written 12.2 years ago by
Jeremy Leipzig
21k
23
votes
6
replies
12k
views
List Of File Formats Used In Bioinformatics?
bioinformatics
updated 2 days ago by
Ram
38k • written 10.4 years ago by
veronicaschroeder78
▴ 140
21
votes
12
replies
9.8k
views
7 follow
An Alternative To Rsync (Or Useful Parameters)
next-gen-sequencing
updated 2 days ago by
Ram
38k • written 11.4 years ago by
Stefano Berri
4.3k
20
votes
15
replies
4.8k
views
7 follow
Experience With Parser Generators For Common Formats
parser
updated 2 days ago by
Ram
38k • written 10.1 years ago by
Fabian Bull
★ 1.3k
20
votes
13
replies
2.8k
views
Download Genomic Ranges From A List Of Coordinates Via Web
fasta
coordinates
updated 5 days ago by
Ram
38k • written 11.2 years ago by
Anima Mundi
★ 2.9k
20
votes
12
replies
4.5k
views
7 follow
Simple Fasta Parsing Is Not Simple.
fasta
python
biopython
updated 6 days ago by
Ram
38k • written 12.9 years ago by
Vlinxify
▴ 120
19
votes
11
replies
18k
views
How to transpose large amounts of datasets in excel
Transpose
excel
updated 5 days ago by
Ram
38k • written 7.7 years ago by
Vanceed
▴ 30
18
votes
31
replies
5.7k
views
How can I easily remove overlapping transcripts, keeping only longest transcript, in a GFF file.
gff
parse
updated 1 day ago by
Juke34
7.8k • written 4.5 years ago by
a.rex
▴ 350
18
votes
27
replies
17k
views
20 follow
Where Can I Download Vcf Files For Publicly Available Data?
vcf
snp
updated 5 days ago by
Ram
38k • written 11.3 years ago by
Kevin
▴ 640
17
votes
7
replies
390
views
Run nextflow sections sequentially
nextflow
updated 6 days ago by
colindaven
4.6k • written 7 days ago by
Raygozak
★ 1.4k
17
votes
18
replies
16k
views
How to download the complete database Nucleotide collection (nr/nt)?
blast
nr
nt
updated 5 days ago by
Ram
38k • written 3.7 years ago by
marongiu.luigi
▴ 670
16
votes
5
replies
5.0k
views
Working With Large *.Bam Files
bam
updated 2 days ago by
Ram
38k • written 12.6 years ago by
User 4133
▴ 150
16
votes
5
replies
11k
views
Phylip To Newick Format Conversion!
phylip
newick
python
updated 6 days ago by
Ram
38k • written 12.9 years ago by
Thaman
★ 3.3k
16
votes
10
replies
12k
views
6 follow
Where Can I Download All Exons Of The Human Genome In Fasta Format (One Big File!) ?
fasta
human-genome
exon
updated 5 days ago by
Ram
38k • written 10.0 years ago by
mariusorion
▴ 60
15
votes
3
replies
2.1k
views
Matching And Extracting Contents Of Two Ncbi Genome Files...??
ncbi
genome
updated 2 days ago by
Ram
38k • written 11.5 years ago by
Kiran
▴ 70
15
votes
7
replies
10k
views
Refseq Proteins For A Given Taxid
protein
biopython
refseq
updated 5 days ago by
Ram
38k • written 11.1 years ago by
Chris
★ 1.6k
15
votes
5
replies
3.6k
views
Galaxy Workflow Management System Customization - Avoiding Duplication Of Files
galaxy
next-gen-sequencing
updated 2 days ago by
Ram
38k • written 12.4 years ago by
toni
★ 2.2k
14
votes
13
replies
4.5k
views
Parsing Custom Snp Info File In Python
python
updated 6 days ago by
Ram
38k • written 12.8 years ago by
Eric Normandeau
11k
14
votes
4
replies
4.4k
views
R Microarray Analysis: Cel Files From Database
microarray
r
mysql
updated 2 days ago by
Ram
38k • written 12.1 years ago by
Michael Schubert
★ 7.1k
14
votes
8
replies
6.8k
views
6 follow
Split Fastq File Into Different Files Only Comprising One Chromosome Each
fastq
updated 6 days ago by
Ram
38k • written 12.3 years ago by
Smitz
▴ 50
14
votes
5
replies
7.6k
views
smoothing or binning bigWig file
bigwig
updated 2 days ago by
rls_08
▴ 40 • written 6.3 years ago by
igor
13k
13
votes
4
replies
8.1k
views
Downloading Fasta Files
fasta
blast
genome
sequence
updated 5 days ago by
Ram
38k • written 12.4 years ago by
Mcdenzlix
▴ 50
13
votes
8
replies
13k
views
Sam To Bed File With Counter Column
bed
sam
updated 2 days ago by
Ram
38k • written 10.2 years ago by
lsvijfhuizen
▴ 90
13
votes
9
replies
22k
views
6 follow
How To Download Full Genome Sequence
genome
sequence
updated 5 days ago by
Ram
38k • written 11.8 years ago by
Palu
▴ 240
13
votes
5
replies
6.9k
views
Extract Line By Line In *.Bam Files
bam
samtools
updated 2 days ago by
Ram
38k • written 12.6 years ago by
User 4133
▴ 150
13
votes
11
replies
4.3k
views
TCGA immunotherapy treated melanoma data
mutation
tcga
SNP
updated 5 days ago by
Ram
38k • written 4.5 years ago by
Pin.Bioinf
▴ 330
12
votes
4
replies
4.0k
views
Retrieve genbank viral genomes
ncbi
genbank
viral-genome
updated 5 days ago by
Ram
38k • written 5.8 years ago by
erwan.scaon
▴ 910
12
votes
9
replies
5.8k
views
9 follow
Forum:
Bioinformatics and wet lab science combined
career
updated 5 days ago by
Ram
38k • written 7.7 years ago by
tretyacv
▴ 40
12
votes
9
replies
717
views
6 follow
How to find promoter sequence of a gene?
promoter
1 day ago by
sunyeping
▴ 80
12
votes
9
replies
9.1k
views
6 follow
How to download genome assemblies from NCBI with a list of GCA identifiers?
ncbi
Assembly
updated 5 days ago by
Ram
38k • written 4.4 years ago by
O.rka
▴ 650
12
votes
4
replies
4.1k
views
Quantile (Limma-voom) normalization
RNA-Seq
voom
updated 6 days ago by
Ram
38k • written 5.5 years ago by
KVC_bioinfo
▴ 570
12
votes
4
replies
6.5k
views
Help With Downloading Sequences From Ensembl
ensembl
perl
sequence
updated 5 days ago by
Ram
38k • written 12.6 years ago by
Sashi Kiran Challa
▴ 310
12
votes
15
replies
4.3k
views
7 follow
ACMG assignment tools
wes
acmg
WES
WGS
updated 2 days ago by
AtenaLia
▴ 30 • written 2.8 years ago by
Eugene A
▴ 170
12
votes
4
replies
1.8k
views
Tutorial:
Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR
DESeq2
updated 6 days ago by
Ram
38k • written 5.5 years ago by
KVC_bioinfo
▴ 570
11
votes
8
replies
2.0k
views
Download Brachypodium Distachyon Genome
genome
updated 5 days ago by
Ram
38k • written 11.7 years ago by
Sara
▴ 130
11
votes
13
replies
4.7k
views
6 follow
Rosalind exercise: Finding a Motif in DNA
python
rosalind
updated 6 days ago by
Ram
38k • written 2.7 years ago by
caro-ca
▴ 20
11
votes
5
replies
452
views
download billion of fasta sequences
fasta
updated 6 days ago by
Ram
38k • written 5 months ago by
Devarakonda
• 0
11
votes
1
reply
3.3k
views
How to download a whole ICGC release of processed data?
icgc
updated 5 days ago by
Ram
38k • written 6.2 years ago by
Michael Schubert
★ 7.1k
11
votes
8
replies
573
views
6 follow
split fasta file to train deep learning model
fasta
split
bash
R
updated 2 days ago by
shenwei356
8.0k • written 10 days ago by
pinheirofabiano
▴ 10
11
votes
6
replies
5.5k
views
Where Can I Download Nucleotide Sequences Of Bacterial Genes?
bacteria
gene
updated 5 days ago by
Ram
38k • written 11.1 years ago by
Tianyang Li
▴ 500
658 results • Page
1 of 14
Recent Votes
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Comment: GO enrichment analysis
Comment: GO enrichment analysis
Answer: What is the NCBI's definition of an "atypical genome"?
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Answer: Somatic truth set
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bowtie 1 is good for short read < 50bp, how long is your read? bowtie2 is better for reads > 50 bp
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The following is the correct code gtf_43<-rtracklayer::import('gencode.v43.primary_assembly.annotation.gtf') dtgtf_43<-data.frame(gtf_4…
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Hmm, not sure why `subset` doesn't match to '0:CD8 T cell' but maybe it's the ":"? An alternative option is the following: ``` idx <- whi…
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g:Profiler has an Arabidopsis option: [g:Profiler][1] [1]: https://biit.cs.ut.ee/gprofiler/gost
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