0
votes
2
replies
218
views
1
vote
1
reply
198
views
4
votes
2
replies
295
views
updated 3 days ago by
a.alnawfal.1992
▴
290
•
written 4 days ago by
Bindiya
▴
10
0
votes
1
reply
267
views
0
votes
2
replies
325
views
2
votes
5
replies
457
views
2
votes
5
replies
1.1k
views
updated 3 days ago by
Kinoppy
•
0
•
written 4.1 years ago by
jamie.pike
▴
80
0
votes
1
reply
165
views
updated 3 days ago by
Jordan M Eizenga
▴
480
•
written 3 days ago by
Thomas
•
0
0
votes
0
replies
125
views
2
votes
2
replies
263
views
0
votes
4
replies
265
views
updated 11 hours ago by
noodle
▴
590
•
written 3 days ago by
sulichkarolina
•
0
1
vote
1
reply
156
views
3 days ago by
Meghan.T
•
0
2
votes
3
replies
427
views
updated 3 days ago by
matthewsmith
▴
10
•
written 11 days ago by
psm
▴
130
0
votes
0
replies
160
views
2
votes
1
reply
167
views
1
vote
1
reply
173
views
0
votes
7
replies
377
views
0
votes
0
replies
119
views
0
votes
3
replies
243
views
0
votes
2
replies
186
views
0
votes
4
replies
457
views
6
votes
6
replies
353
views
0
votes
0
replies
112
views
1
vote
2
replies
205
views
0
votes
2
replies
518
views
0
votes
0
replies
113
views
4 days ago by
malonzm1
▴
20
1
vote
1
reply
1.5k
views
updated 4 days ago by
me
▴
760
•
written 6.1 years ago by
fabian.grammes
▴
10
1
vote
12
replies
838
views
6 follow
updated 15 hours ago by
Ram
44k
•
written 3 months ago by
giulia.cosenza
▴
10
0
votes
2
replies
190
views
3 days ago by
Calvin-Calvin
•
0
0
votes
5
replies
236
views
updated 3 days ago by
Pierre Lindenbaum
162k
•
written 4 days ago by
harry
▴
30
3
votes
3
replies
231
views
updated 3 days ago by
a.alnawfal.1992
▴
290
•
written 4 days ago by
analyst
▴
50
0
votes
6
replies
304
views
0
votes
0
replies
92
views
1
vote
1
reply
152
views
0
votes
7
replies
8.2k
views
7 follow
0
votes
0
replies
99
views
2
votes
1
reply
152
views
0
votes
6
replies
344
views
0
votes
1
reply
168
views
1
vote
5
replies
2.0k
views
updated 4 days ago by
Ram
44k
•
written 4.6 years ago by
Assa Yeroslaviz
★
1.9k
0
votes
0
replies
197
views
0
votes
4
replies
244
views
4 days ago by
sainavyav22
•
0
1
vote
0
replies
199
views
updated 5 days ago by
Ram
44k
•
written 5 days ago by
giulia.cosenza
▴
10
1
vote
2
replies
202
views
updated 5 days ago by
Ram
44k
•
written 5 days ago by
Hansen_869
▴
80
0
votes
1
reply
155
views
1
vote
1
reply
165
views
0
votes
1
reply
187
views
updated 5 days ago by
zx8754
11k
•
written 5 days ago by
swathi.graduate1998
•
0
0
votes
1
reply
153
views
updated 4 days ago by
biofalconch
★
1.1k
•
written 5 days ago by
jqg44605
•
0
6
votes
3
replies
301
views
0
votes
1
reply
238
views
updated 5 days ago by
Nat.Nataren
▴
40
•
written 7 days ago by
Happiness
•
0
Recent Votes
Recent Locations •
All
United States, 2 minutes ago
United States, 3 minutes ago
Rome, 4 minutes ago
Istanbul, Turkey, 6 minutes ago
São Paulo, 7 minutes ago
United States, 10 minutes ago
France, 14 minutes ago
Recent Awards •
All
Popular Question to
nazninislamnif
▴
20
Popular Question to
mropri
▴
150
Scholar to
Gordon Smyth
★
7.2k
Popular Question to
asalimih
▴
60
Popular Question to
devenvyas
▴
750
Teacher to
Kevin Blighe
88k
Recent Replies
Comment: Is T2T genome a "alternate assembly"
by
GenoMax
143k
You are downloading the correct file if you are interested in the T2T genome.
My guess is that the assembly is labeled "alternate" likely…
Comment: postdoc/master's position AI ML
by
Ram
44k
Please invest some effort into formatting your post, don't just copy-paste. A lot can be lost and mistranslated when you copy from a web-pa…
Comment: Determining biological relevance of a list of motifs?
by
Ronin
▴
10
Hi, sorry for the late response, I was ill. The setup is looking at a particular tissue (eye samples) in a non-model species, and I used th…
Comment: Failed to download data from EBI BioStudies with ascp/Aspera
by
ruiyan_hou
•
0
Thank you very much for your quick reply! It is very useful.
Comment: how linearize nucleotide lines in axt file
by
rfran010
▴
960
I think that's a tough one. Will the two sequences under each header always be equal lengths? If so, I'm thinking a custom script that can …
Comment: Failed to download data from EBI with ascp
by
Michael
54k
I have tested and concluded that **there is a problem with Aspera download from** **BioStudies** (ENA and BioStudies are technically differ…
Comment: Slot to pull data from for DoHeatmap
by
Ming Tommy Tang
★
4.0k
use the data slot, and as shown in the code, you then scale it by yourself.
Answer: Example human WGS fastq data
by
Ming Tommy Tang
★
4.0k
Take a look at Genome in a Bottle https://www.nist.gov/programs-projects/genome-bottle
Answer: Download SRR by parallele and fastq dump with a wired problem
by
Ming Tommy Tang
★
4.0k
I would suggest you to use fastq-dl https://github.com/rpetit3/fastq-dl to download at project level
Comment: Alignment tool for very short reads (25bp)
by
Ming Tommy Tang
★
4.0k
use bowtie1 for short reads
https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.3.1/
Comment: In silico PCR - multiple Primers and multiple sequences at the same time
by
noodle
▴
590
I understand you have a steep learning curve...you should learn how to use blast from a command line.
Comment: Failed to download data from EBI with ascp
by
ruiyan_hou
•
0
Hi Michael, I still cannot download.
Actually I want to download E-MTAB-6798 from ENA.
https://www.ebi.ac.uk/biostudies/arrayexpress/…
Comment: Alignment tool for very short reads (25bp)
by
arriyaz.nstu
▴
50
Thank you very much for your reply.
Comment: Alignment tool for very short reads (25bp)
by
arriyaz.nstu
▴
50
Thank you too for a very nice and clear suggestion. Sure, I will check the `bowtie2` options.
Comment: Help aligning Nanopore Long Read RNA seqs
by
rfran010
▴
960
Thanks! I think you might be misinterpreting your coverage output. I believe that just indicates the chromosome and how many reads map to i…
Traffic: 1426 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6