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121,315 results • Page
584 of 2427
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3
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7
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Read group info
BWA
bwa-mem2
updated 3.8 years ago by
Ishak
▴ 20 • written 3.8 years ago by
priya.bmg
▴ 70
1
vote
1
reply
2.4k
views
Seurat to Trajectory Analysis
scRNA
seurat
Pseudotime
Trajectory
updated 3.8 years ago by
ATpoint
88k • written 3.8 years ago by
AbsaR
• 0
0
votes
0
replies
709
views
scRNAseq STAR create index how to set --sjdbOverhang
scRNAseq
STAR
sjdbOverhang
3.8 years ago by
Binghong
▴ 20
0
votes
6
replies
2.3k
views
Allele frequency calculation
AF
VCF
snp
calc
updated 3.8 years ago by
sbstevenlee
▴ 480 • written 3.8 years ago by
rheab1230
▴ 140
1
vote
0
replies
699
views
Sequence alignment in Subio on personal PC
expression
differential
alignment
raw
analysis
count
sequence
gene
fastq
3.8 years ago by
catalyst
▴ 10
0
votes
0
replies
632
views
What is the best way to publish data from LIMS/ELN to DataLake
ELN
DataLake
Warehouse
LIMS
3.8 years ago by
Kubendra
• 0
0
votes
0
replies
607
views
Codon usage with unknown/unspecified Nucleotides - coRdon
nucleotides
Codon
unspecified
Usage
coRdon
3.8 years ago by
lucas.caue.jacintho
▴ 30
0
votes
1
reply
881
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads
reference-genome
assembly
updated 14 months ago by
Ram
45k • written 3.8 years ago by
Ashi
▴ 20
0
votes
0
replies
1.6k
views
Job:
Multiple data scientist positions in computational biomedicine
biomedicine
data-science
machine-learning
3.8 years ago by
pandey.gaurav
▴ 200
0
votes
8
replies
2.4k
views
From EC terms to GO terms to GO enrichment
enrichment
EC
terms
GO
3.8 years ago by
margot.27.muller
▴ 30
0
votes
0
replies
698
views
Is there any way to customise the colour codes for multiple-sequence alignment (MSA)?
alignment
Python
genomics
R
phylogeny
3.8 years ago by
Kumar
▴ 120
0
votes
0
replies
633
views
linkage disequilibrium and haplotype analysis of GWAS .
plink
plink1.9
GWAS
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
gdeep.14
• 0
1
vote
2
replies
1.8k
views
Understanding bcftools command
bcftools
merge
filter
updated 3.3 years ago by
Ram
45k • written 3.8 years ago by
rtho
▴ 20
0
votes
1
reply
678
views
How to get the assembly larger than 3.5Gb in NextDenovo?
assemble
NextDenovo
genome
large
updated 3.8 years ago by
GenoMax
151k • written 3.8 years ago by
Ural Yunusbaev
• 0
1
vote
2
replies
2.3k
views
Survival Analysis Cut-off
KaplanMeier
SurvivalAnalysis
CoxRegression
Cutoff
SPSS
updated 3.8 years ago by
Nitin Narwade
★ 1.6k • written 3.8 years ago by
science03
▴ 50
5
votes
4
replies
2.8k
views
Annotating cell types via integrating a query dataset with a reference dataset and then cluster
celltypeclassification
scRNAseq
3.8 years ago by
Kaz
• 0
0
votes
1
reply
1.0k
views
Job:
Community Engagement Scientist
neuroimaging
bioimaging
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
mmariano
• 0
1
vote
3
replies
1.4k
views
grep will not open text file that I created using split command in linux
grep
split
updated 3.8 years ago by
Ram
45k • written 3.8 years ago by
psb7
▴ 20
6
votes
3
replies
4.3k
views
PyMol - molecule export problem
PyMol
molecule
format
PDB
export
updated 3.8 years ago by
Mensur Dlakic
★ 29k • written 3.8 years ago by
macbas
▴ 20
2
votes
1
reply
699
views
Bioinformatics application on data
WES
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
Sania
• 0
3
votes
5
replies
1.6k
views
Downloading WGBS sequencing reads for cancer sample and healthy sample
Dataset
Cancer
WGBS
Healthy
3.7 years ago by
Nishat
▴ 10
0
votes
0
replies
1.2k
views
Job:
Bioinformatician/Computational Biologist. Single cell genomics of primate brain to design cell-type-targeted viral vectors. 2 positions, Basel Switze…
AAV
single-cell
brain
epigenomics
updated 24 months ago by
Ram
45k • written 3.8 years ago by
cameron.cowan
▴ 50
5
votes
5
replies
1.7k
views
Direct - indirect binding of a transcription factor in chip-seq analysis
directbinding
indirectbinding
trancriptionfactors
chipseq
chipseqanalysis
updated 3.8 years ago by
Ankit
▴ 520 • written 3.8 years ago by
buffealo
▴ 130
2
votes
7
replies
1.1k
views
How can I get the exact 3D structure of the protein to use the PDB file for PPI docking
Uncharacterized
Protein
structure
updated 3.8 years ago by
Ram
45k • written 3.8 years ago by
ADEYEMI
• 0
3
votes
4
replies
5.9k
views
library(Seurat) shows error: package or namespace load failed for ‘Seurat’ in .doLoadActions(where, attach)
Seurat
updated 3.8 years ago by
Kevin Blighe
89k • written 3.8 years ago by
Wei-Ting
• 0
0
votes
0
replies
499
views
Multi-phenotype GWAS analysis, how to deal with high lambda
statistics
GWAS
3.8 years ago by
Miranda
• 0
1
vote
2
replies
1.8k
views
Error in DESeqDataSetFromMatrix Function in DESeq Library
Differential
Gene
DESeq
R
Expression
updated 3.8 years ago by
swbarnes2
15k • written 3.8 years ago by
davidenoma
▴ 50
0
votes
0
replies
475
views
PMut server error
PMut
updated 11 months ago by
Ram
45k • written 3.8 years ago by
Julia
• 0
0
votes
4
replies
2.1k
views
Best match Blast
tblastx
updated 3.8 years ago by
Ram
45k • written 3.8 years ago by
aka
▴ 10
2
votes
11
replies
9.2k
views
Alignment using bwa-mem2
alignment
bwa-mem2
3.8 years ago by
priya.bmg
▴ 70
4
votes
7
replies
1.8k
views
The usage of sed
linux
sed
shell
updated 3.8 years ago by
cpad0112
21k • written 3.8 years ago by
bill
• 0
0
votes
0
replies
600
views
Bioinformatic interrogation of non-coding variants in gVCFs
VCF
gVCF
non-coding
3.8 years ago by
tacrolimus
▴ 150
0
votes
0
replies
336
views
Library normalization of data sets containing RFUs?
somascan
3.8 years ago by
Ina Jungersen
• 0
1
vote
3
replies
2.1k
views
Read group info
info
read
BWA
group
bwa-mem2
updated 3.8 years ago by
GenoMax
151k • written 3.8 years ago by
priya.bmg
▴ 70
3
votes
5
replies
1.8k
views
Where do I get a WES dataset of size <1GB
WGS
WES
genomics
updated 3.8 years ago by
German.M.Demidov
★ 3.0k • written 3.8 years ago by
pragnapcu
▴ 10
3
votes
5
replies
18k
views
NCBI error report
blastp
alignment
updated 23 months ago by
Ram
45k • written 9.2 years ago by
archana.bioinfo87
▴ 210
0
votes
1
reply
783
views
SRA splitting for each metagenome-assembled genome
SRA
metagenome-assembled
metagenome
genome
MAG
splitting
updated 3.8 years ago by
cpad0112
21k • written 3.8 years ago by
hs
• 0
4
votes
8
replies
4.2k
views
8 follow
R Programming - how to make a simple heat map
Heatmap
R
updated 3.8 years ago by
seidel
11k • written 3.8 years ago by
manishamanu5198
• 0
0
votes
1
reply
1.3k
views
question about running CIRI-full
RNA-Seq
updated 3.8 years ago by
251407536
• 0 • written 5.1 years ago by
dongxin
• 0
2
votes
2
replies
1.7k
views
How to identify mutations from FASTA sequences?
Mutation
Fasta
updated 3.8 years ago by
Wakala
▴ 20 • written 3.8 years ago by
Anisur Rahman
▴ 80
0
votes
7
replies
2.1k
views
align using file.ht2
ht2
hisat2
updated 3.8 years ago by
Ram
45k • written 3.8 years ago by
m90
▴ 30
0
votes
2
replies
4.0k
views
Export normalized matrix Scanpy
Scanpy
updated 3.8 years ago by
Nitin Narwade
★ 1.6k • written 3.8 years ago by
Skamboj
• 0
0
votes
0
replies
1.5k
views
Job:
JOB OPPORTUNITY!!! Scientist, Next Generation Sequencing (Molecular Biology)
NGS
careers
updated 24 months ago by
Ram
45k • written 3.8 years ago by
jkurtz
• 0
2
votes
2
replies
1.3k
views
Samtools difference between Mapped and Unmapped read
unmapped
samtools
mapped
updated 3.8 years ago by
WouterDeCoster
48k • written 3.8 years ago by
Sean
• 0
0
votes
3
replies
1.3k
views
DESeq2 design question
RNA-seq
DESeq2
R
updated 3.8 years ago by
rodolfo.peacewalker
▴ 390 • written 3.8 years ago by
Lepomis_8
▴ 30
1
vote
2
replies
1.1k
views
How to find the number of copies of genes (e.g. 23S rRNA) present in a genome?
antimicrobial-resistance
reference-database
copies-of-genes
metadata
NCBI
3.8 years ago by
eli_bayat
▴ 90
0
votes
0
replies
566
views
Performing enrichment analysis using extracted GOs from topGO
analysis
enrichment
topGo
Enrichment
Functional
3.8 years ago by
KennedyOmufwoko
• 0
0
votes
2
replies
817
views
I can't find T cell receptors in my RNAseq expression table
TRDC
t-cell
NGS
TRBC2
TRAC
updated 3.8 years ago by
ATpoint
88k • written 3.8 years ago by
Andrew
▴ 20
0
votes
2
replies
3.7k
views
gatk4 python package
conda
package
python
gatk4
3.8 years ago by
Mehmet
▴ 820
2
votes
7
replies
3.3k
views
How do I log into this ftp server and look around?
ftp
updated 3.8 years ago by
Mensur Dlakic
★ 29k • written 3.8 years ago by
curious
▴ 890
121,315 results • Page
584 of 2427
Recent Votes
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
Finding the significance of the overlap between 2 or more gene sets using simulation in R.
Comment: How to add GFP in STAR reference?
nanopore unaligned bam files
WGCNA Soft Power Problem
Choosing a high soft thresholding power in WGCNA, is it reasonable?
A: Extracting certain columns from VCF file
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Comment: IGV view for Chromatin accessibility ATAC-seq
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How were these tracks generated? Is it bigwig files (or bedGraphs) at single-base resolution or was it like deeptools bamCoverage which by …
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> VEP can integrate custom annotation from standard format files into your results by using the --custom flag. see https://www.ensem…
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Comment: Phased haplotype using WGS data from Nebula Genomics and GATK
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You'll need to align the reads using a tool like `bwa mem` first. Try doing a tutorial to get the concepts or read through at least some of…
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Hey, seems like his account is not existing anymore. If anyone else is still interested, I developed a tool evaluating the nucleosomal s…
Comment: How to add GFP in STAR reference?
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It may be best to include a `gene` entry in addition so the file matches [**GTF spec**][1]. GFP unknown gene 1 580 . …
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The low number of peaks called is your confirmation. You've visually confirmed there's no real issue with peak calling in your data - there…
Comment: How to add GFP in STAR reference?
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15k
Not even I think, it will just report that reads were counted in the opposite strand, but do check 'cus if you do really stringent counting…
Comment: How to add GFP in STAR reference?
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Thank you. If I put the wrong stand will I just not get any counts for GFP?
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You lose some granular control over parameters. If you set the block to be larger than the number of genes, you just get a "default" run of…
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Not a strict requirement as far as I remember, I think it will even except a . (dot) for the strand (== unstranded feature) I would assum…
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Is there any other way to confirm this (quantitatively)? I am trying to conclude this analyses/see if I can find useful information.
Comment: Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
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You would use clip5pNbases (because you're clipping from the 5' end [i.e. the left-side] of the R1 read). You would use Reverse, because t…
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This was asked dozens of times before, please searh for previous threads. In brief, batch is nested with condition, so actually it's not po…
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