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I know this is an old post, but I experienced the same issue using rRNA depletion kit and found this paper https://www.nature.com/articles…
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Traditionally, mtDNA sequences have been used for this species. Several rounds of whole-genome duplication and autotetraploidy make whole n…
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That's interesting from a Norwegian perspective. You also may find [SalmoBase][1] useful.
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This post does not fit the theme of this forum.
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Related past thread for reference: https://www.biostars.org/p/9613794/ , in case you know about the programs mentioned.
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