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121,832 results • Page
600 of 2437
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
549
views
Pan-cancer over-expressed or down-regulated gene list
TCGA
expression
4.1 years ago by
Shicheng Guo
★ 9.6k
0
votes
4
replies
4.0k
views
Help with Pathway annotation after Seurat DE analysis
Seurat
enrichment
DE
Pathway
4.1 years ago by
mshubham
• 0
0
votes
0
replies
712
views
Annovar output no comment column?
annovar
GWAS
annotation
Annovar
Post-GWAS
4.1 years ago by
okiedokie1208
▴ 40
1
vote
9
replies
4.1k
views
Help with Volcano plot
Volcano
r
plot
ggplot
updated 4.1 years ago by
Kevin Blighe
89k • written 4.1 years ago by
mshubham
• 0
7
votes
5
replies
1.8k
views
Orthology, sequence similarity, and conservation of function
homology
function
similarity
prediction
sequence
orthology
4.1 years ago by
Dunois
★ 2.9k
0
votes
1
reply
864
views
PHYLIP file has not seq text.
iqtree
alignment
Vcf
vcf2phylip
updated 4.1 years ago by
Gio12
▴ 220 • written 4.1 years ago by
Kagisoralph
• 0
0
votes
0
replies
748
views
Building vcf from most common alleles
vcf
consensus
variant
4.1 years ago by
Eugene
• 0
0
votes
0
replies
739
views
Does anyone have any experience in hacking MaxBin2 to handle custom marker sets?
metagenomics
maxbin2
binning
4.1 years ago by
O.rka
▴ 750
1
vote
0
replies
949
views
Blog:
Revisiting bulk RNA-Seq applications
RNASeq
variants
TWAS
Neoantigens
updated 2.2 years ago by
Ram
45k • written 4.1 years ago by
Thind amarinder
▴ 340
0
votes
5
replies
1.3k
views
How would I go about picking out certain files in a FASTA file and putting them in a new, separate file?
MSA
fasta
dataset
multiple_sequence_alignment
4.1 years ago by
crisstyl
▴ 10
1
vote
1
reply
805
views
Demultiplex Quality
sequence
demultiplex
illumina
updated 4.1 years ago by
GenoMax
153k • written 4.1 years ago by
sx2263
• 0
0
votes
0
replies
512
views
Plink extracting individuals based on certain SNPs
Plink
genotypes
SNP
updated 4.0 years ago by
Ram
45k • written 4.1 years ago by
Ruby
• 0
0
votes
0
replies
705
views
Job:
Post-doc Job Opportunity in NYC
post-doc
systems-biology
computational-biology
updated 2.5 years ago by
Ram
45k • written 4.1 years ago by
supindab
▴ 30
1
vote
1
reply
1.0k
views
Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering
seaborn
python
Hierarchical
clustering
updated 4.1 years ago by
zorbax
▴ 650 • written 4.1 years ago by
Jonathan Lefebre
▴ 70
0
votes
0
replies
704
views
Job:
Job Opening: Bioinformatician and Sr. Bioinformatician at UCSC's Genomics Institute
genomics
updated 2.5 years ago by
Ram
45k • written 4.1 years ago by
genomicshr
▴ 30
6
votes
4
replies
1.6k
views
DESeq2 - design matrix and interaction terms
deseq2
rnaseq
interactions
LRT
updated 3.4 years ago by
1769mkc
★ 1.3k • written 4.1 years ago by
pkfsantos
• 0
1
vote
2
replies
2.1k
views
Interpretation of DESeq2 DE-analysis
differential
DESeq2
expression
R
updated 3.4 years ago by
1769mkc
★ 1.3k • written 4.1 years ago by
Vladimir Leshuk
▴ 50
0
votes
0
replies
695
views
Kraken2 with phylogeny as input (instead of taxonomy)?
kraken
phylogeny
4.1 years ago by
cjb
▴ 10
0
votes
0
replies
717
views
Constructing GRNs from multimodal data?
multimodal
scRNA-seq
SCENIC
GRN
scATAC-seq
updated 4.1 years ago by
GenoMax
153k • written 4.1 years ago by
kgoss
▴ 10
4
votes
4
replies
3.6k
views
Cell hashing vs barcoding
barcoding
hashing
updated 3.7 years ago by
plijnzaad
▴ 40 • written 4.1 years ago by
Cheng Wei
• 0
0
votes
0
replies
1.1k
views
Pybedtools/pyranges/Bedtools: How to Identify features near genes, but where window size is only comprised of host sequence (excluding features)?
bedtools
genetics
pyranges
pybedtools
4.0 years ago by
Tobias
• 0
3
votes
5
replies
5.1k
views
CRAM to BAM using SAMTOOLS
SAMTOOLS
CRAM
BAM
updated 4.1 years ago by
Pierre Lindenbaum
166k • written 4.1 years ago by
defneercelen
• 0
1
vote
0
replies
567
views
Is there an updated Arabidopsis annotation for Mapman Desktop app?
Mapman
Arabidopsis
anotaions
Updated
4.1 years ago by
finn.scout.claassens
▴ 10
2
votes
2
replies
1.0k
views
How to map a file with mulitple olisogos to a reference genome
blastn
4.1 years ago by
dominik.lagler
▴ 30
4
votes
3
replies
1.6k
views
Finding metagenomic short read sequences
antimicrobial
reference
short
sequences
reads
data
metagenomic
resistance
updated 4.1 years ago by
Tm
★ 1.1k • written 4.1 years ago by
eli_bayat
▴ 100
0
votes
0
replies
1.1k
views
Job:
Group Leader – Structural Systems Biology
Computational-Systems-Biology
updated 2.7 years ago by
Ram
45k • written 4.1 years ago by
EMBL Recruitment
▴ 30
0
votes
0
replies
556
views
DE analysis for single cell data with strong batch effect or different sequencing depth
cell
expression
differential
de
single
4.1 years ago by
Cheng Wei
• 0
1
vote
2
replies
946
views
vcf file genotypes
genotype
vcftools
GATK
4.1 years ago by
Vic
▴ 130
0
votes
0
replies
2.2k
views
Making box plot with pvalue for a set of genes across clusters or condition using seurat RNA slot count data
seurat
boxplot
scrna
4.1 years ago by
sam
▴ 30
4
votes
3
replies
2.1k
views
Decoy sequence for human reference GRCh38 assembly
reference
genome
Decoy
assembly
Human
updated 4.1 years ago by
Tm
★ 1.1k • written 4.1 years ago by
priya.bmg
▴ 70
0
votes
0
replies
456
views
Selecting a group of genes for coexpression network
gene_coexpression_network
rnaseq
4.1 years ago by
GenesisBio
• 0
0
votes
2
replies
1.2k
views
Gene filtering based on Coefficient of Variation > 50%
microarray
4.1 years ago by
smrutimayipanda
▴ 20
0
votes
4
replies
2.1k
views
Best practice for running GATK VQSR on X chromosome
WGS
GATK
WES
3.8 years ago by
samuelandjw
▴ 270
1
vote
1
reply
853
views
How to perform differential expression analysis without the matched normal tissue data?
RNA-Seq
Differential
Expression
DE
ICGC
PCAWG
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
Zahra
▴ 110
8
votes
7
replies
11k
views
8 follow
How to get rs number for the variants list?
SNP
updated 4.1 years ago by
sk792
▴ 40 • written 8.6 years ago by
Andy
▴ 10
22
votes
8
replies
16k
views
6 follow
SNP rsid by location?
snp
updated 4.1 years ago by
sk792
▴ 40 • written 12.6 years ago by
Agatha
▴ 350
2
votes
2
replies
2.3k
views
Change STAR Parameters in rsem-calculate-expression
RNA-Seq
RSEM
STAR
updated 4.1 years ago by
Jeremy Leipzig
23k • written 4.1 years ago by
patelk26
▴ 340
3
votes
2
replies
1.7k
views
Percentages in relative abundance of 16s rRNA gene
metagenomics
arn
abundance
relative
16s
updated 4.1 years ago by
MSRS
▴ 590 • written 4.1 years ago by
marc.acfz
• 0
0
votes
2
replies
1.3k
views
Jupyterlab / Python : OSError and MemoryError help
Jupyterlab
GSEApy
GSEA
Python
updated 4.1 years ago by
GenoMax
153k • written 4.1 years ago by
Genosa
▴ 160
0
votes
2
replies
947
views
Testing the net differences between 2 treatments, over the control
T-test
4.1 years ago by
haasroni
• 0
0
votes
3
replies
3.7k
views
Seurt Rename Orig.ident
Seurta
cell
RNAseq
Single
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
clizama
• 0
0
votes
0
replies
556
views
Interpreting Bedtools Intersection Between BAM and BED Files
bedtools
4.1 years ago by
Steven Mick
• 0
0
votes
3
replies
3.5k
views
How to calculate genotype concordance, comparing two .vcf files with Picard or SnpSift
picard
GenotypeConcordance
SnpSift
updated 4.1 years ago by
Pierre Lindenbaum
166k • written 5.0 years ago by
anamaria
▴ 220
2
votes
3
replies
1.8k
views
Forum:
Freelancers for bioinformatics web development
bioinformatics
web-development
freelance
updated 4.1 years ago by
Dunois
★ 2.9k • written 4.1 years ago by
AmoyACTG
▴ 20
1
vote
2
replies
2.1k
views
Where can I find GPL571 cdf file?
CDF file
Partek
Gene Expression Value
updated 4.1 years ago by
seyed morteza
• 0 • written 7.6 years ago by
gavinym1010
▴ 10
1
vote
0
replies
570
views
Exonerate edit distance threshold
Exonerate
updated 4.1 years ago by
seidel
11k • written 4.1 years ago by
helloword
• 0
3
votes
1
reply
5.1k
views
Tutorial:
Affymetrix HTA 2.0 id conversion
biomart
HTA
affymetrix
Affymetrix
2.0
updated 19 months ago by
MaxF
▴ 120 • written 4.1 years ago by
Kevin Blighe
89k
2
votes
1
reply
1.0k
views
Python modules/code to generate triangulations of Solvent Excluded Surfaces
Proteins
Visualization
Python
Molecular
4.1 years ago by
Tzunami
▴ 10
0
votes
0
replies
774
views
Add SM group STAR
samtools
variant
RNA-seq
calling
GATK
STAR
4.1 years ago by
Lucy
▴ 170
3
votes
4
replies
1.2k
views
Sam file arrangement
BAM
BED
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
aenna_p
• 0
121,832 results • Page
600 of 2437
Recent Votes
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Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
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Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
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For posterity, here is `nvidia-smi` output for our cluster: ``` +-------------------------------------------------------------------------…
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How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here. …
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153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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thank you.
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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6.4k
For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
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