0
votes
0
replies
946
views
0
votes
1
reply
1.1k
views
4
votes
4
replies
2.9k
views
3
votes
4
replies
3.1k
views
0
votes
1
reply
1.9k
views
1
vote
6
replies
2.0k
views
0
votes
7
replies
2.3k
views
updated 4.1 years ago by
ATpoint
89k
•
written 4.1 years ago by
humbertojirey
•
0
0
votes
1
reply
896
views
0
votes
0
replies
872
views
4.1 years ago by
daniela.paola.s.p
▴
70
2
votes
2
replies
1.1k
views
4.1 years ago by
ospinae
•
0
0
votes
1
reply
961
views
updated 4.1 years ago by
Jean-Karim Heriche
27k
•
written 4.1 years ago by
jaqx008
▴
110
0
votes
0
replies
572
views
4.1 years ago by
Adarsh Kuamr
▴
60
0
votes
1
reply
780
views
2
votes
2
replies
859
views
0
votes
0
replies
619
views
4
votes
7
replies
3.3k
views
0
votes
0
replies
713
views
0
votes
0
replies
780
views
0
votes
1
reply
726
views
6
votes
3
replies
6.5k
views
updated 4.1 years ago by
Kevin Blighe
89k
•
written 4.1 years ago by
curiousmind007
▴
30
3
votes
6
replies
6.4k
views
1
vote
3
replies
2.3k
views
0
votes
0
replies
813
views
1
vote
4
replies
1.4k
views
updated 4.1 years ago by
Tm
★
1.1k
•
written 4.1 years ago by
robert.murphy
▴
110
0
votes
2
replies
1.5k
views
0
votes
5
replies
1.8k
views
updated 4.1 years ago by
German.M.Demidov
★
3.0k
•
written 4.1 years ago by
seta
★
1.9k
0
votes
0
replies
1.5k
views
4.1 years ago by
waihungh
▴
20
0
votes
0
replies
1.4k
views
0
votes
1
reply
1.6k
views
updated 4.1 years ago by
384306874
•
0
•
written 5.2 years ago by
chaudharyc61
▴
110
0
votes
0
replies
919
views
4.1 years ago by
c.heininger
▴
10
5
votes
12
replies
3.6k
views
0
votes
1
reply
820
views
0
votes
1
reply
856
views
0
votes
0
replies
873
views
3
votes
1
reply
1.7k
views
updated 2.5 years ago by
Ram
45k
•
written 4.1 years ago by
anithaslvn
▴
10
0
votes
1
reply
1.1k
views
1
vote
1
reply
1.2k
views
updated 4.1 years ago by
Evan
▴
250
•
written 4.1 years ago by
changxu.fan
▴
80
2
votes
3
replies
1.4k
views
0
votes
0
replies
819
views
4.1 years ago by
heskett
▴
110
0
votes
8
replies
1.7k
views
0
votes
0
replies
710
views
4.1 years ago by
Rovshan
•
0
0
votes
0
replies
524
views
1
vote
1
reply
1.0k
views
1
vote
3
replies
1.6k
views
2
votes
2
replies
1.4k
views
4.1 years ago by
tomastokar
▴
50
0
votes
0
replies
443
views
4.1 years ago by
a_confused_biologist
•
0
21
votes
14
replies
12k
views
updated 2.2 years ago by
Ram
45k
•
written 4.8 years ago by
poisonAlien
★
3.2k
1
vote
3
replies
2.1k
views
0
votes
1
reply
1.3k
views
1
vote
1
reply
1.1k
views
updated 4.1 years ago by
iraia.munoa
▴
130
•
written 5.4 years ago by
embueno
•
0
Recent Votes
Recent Locations •
All
United Kingdom, 1 minute ago
Germany, 8 minutes ago
United Kingdom, 9 minutes ago
France/Nantes/Institut du Thorax - INSERM UMR1087, 9 minutes ago
United States, 13 minutes ago
Canada, 27 minutes ago
United States, 39 minutes ago
Recent Awards •
All
Popular Question to
graeme.thorn
▴
110
Popular Question to
1769mkc
★
1.3k
Popular Question to
himanshu0102
•
0
Popular Question to
AHerik
▴
40
Popular Question to
ecSeq Bioinformatics
▴
20
Popular Question to
Penny
•
0
Popular Question to
ja569116
•
0
Recent Replies
Answer: Criteria for choosing variants
by
benformatics
4.2k
The whole question seems very confusing as if there is a substantial knowledge gap.
Calling variants in tumor-normal pairs is relatively…
Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
by
GenoMax
153k
> Cannot run FragGeneScan. Please indicate the file directory in 'setting' file.
Looks like you will need to add the. directory containing…
Comment: How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
by
Pallishree
•
0
i have run this command
(maxbin2_env) [m5@mks1 FASTQ]$ /data/sms/home/m5/.conda/envs/maxbin2_env/bin/run_MaxBin.pl \
? -contig /…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Arup Ghosh
3.4k
The `--nv` flag for apptainer is there?
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Arup Ghosh
3.4k
The GPUs have 24 GB memory each but only worked with the flag.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Pierre Lindenbaum
166k
it doesn't work with `--htvc-low-memory` (same error with 4.5.0-1 )
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
GenoMax
153k
`Parabrix` is not supported on multi-instance GPU's (MIG) so having that setting disabled is perfect.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
GenoMax
153k
That option is indicated for using a 16GB GPU. Was that the case or even though you had a >16 GB GPU, this option was needed to fix the err…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Arup Ghosh
3.4k
I faced a similar issue with Parabricks and version 4.3.0; using `--htvc-low-memory` resolved the problem.
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★
29k
Maybe this will help:
https://stackoverflow.com/questions/67091056/gpu-allocation-in-slurm-gres-vs-gpus-per-task-and-mpirun-vs-srun
Comment: Split chromosome into smaller fragments to save memory when build xg and gcsa in
by
Jordan M Eizenga
▴
750
GCSA2 indexing is fairly demanding on disk space, so that can happen. I would generally recommend having 1-2 TB of disk availability if you…
Comment: how to start
by
shelkmike
★
1.7k
If you plan to become a professional bioinformatician, I don't recommend the approach suggested by Joe and Yura Grabovska (learning bioinfo…
Comment: vg input and output files
by
GenoMax
153k
Have you looked at this page: https://github.com/vgteam/vg/wiki/Basic-Operations
There is a pipeline illustration on this page that shows …
Comment: Criteria for choosing variants
by
ATpoint
89k
To me knowledge, ensembl approach means that you run several tools and then run some sort of filtration and classification approach to deci…
Comment: vg input and output files
by
Pierre Lindenbaum
166k
vg is a toolkit containing different tools. What are you talking about when you want to use 'input' and 'output' files.
Traffic: 2621 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6