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121,921 results • Page 715 of 2439
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Job: PhD / Post-doc position: Computational Epigenomics (Saarbruecken, Germany)
phd epigenomics
updated 2.3 years ago by 45k • written 4.6 years ago by ▴ 50
4
votes
2
replies
1.6k
views
Merging chip-seq samples sequenced in two different runs
ChIP-Seq RNA-Seq
updated 4.6 years ago by 9.0k • written 4.6 years ago by ▴ 70
2
votes
5
replies
1.4k
views
Error in Saving Files
python PDB
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 140
3
votes
2
replies
1.4k
views
Is it necessary to test for multiple correction during differential expression analysis on microRNA data?
microRNA miRNA-seq differential expression stats
updated 4.6 years ago by 9.0k • written 4.6 years ago by ▴ 150
0
votes
3
replies
3.5k
views
FASTQC - Good "Per Base Sequence Quality" but Bad "Per Tile Sequence Quality"?
fastqc covid-19 ngs
4.6 years ago by cg1440 ▴ 60
0
votes
2
replies
1.4k
views
RNA-seq spike-ins with Drosophila cells
RNA-Seq spike-ins
4.6 years ago by theodore ▴ 110
0
votes
10
replies
5.2k
views
Imputing missing genotypes using Beagle
Beagle missing
4.6 years ago by marinamartinezalvaro • 0
4
votes
7
replies
6.6k
views
Beagle imputation - duplication position error
SNP
updated 4.6 years ago by • 0 • written 7.4 years ago by ▴ 30
7
votes
6
replies
2.5k
views
nohup with while loop
bash loop SRAtoolkit
4.6 years ago by pt.taklifi ▴ 70
0
votes
2
replies
1.5k
views
Large majority of RNASeq reads mapping to intergenic regions - common issues excluded
rna-seq alignment STAR htseq
4.6 years ago by npb27 ▴ 20
3
votes
3
replies
815
views
Problems sam > bam conversion
sequencing alignment genome
4.6 years ago by Pinca ▴ 10
1
vote
3
replies
1.1k
views
SRA runs: How should I know which run is control and which one is treatment?
RNA-Seq
updated 4.6 years ago by ▴ 10 • written 4.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
compare two assembly genomes
assembly pangenome
updated 4.6 years ago by ▴ 590 • written 4.6 years ago by ▴ 10
3
votes
7
replies
2.3k
views
lncRNA quantification using featureCounts
lncRNA featureCounts
4.6 years ago by kuntalasb ▴ 10
2
votes
2
replies
1.7k
views
COG database download error (part-1)
cog annotation ftp
updated 4.6 years ago by ★ 30k • written 4.6 years ago by ▴ 590
2
votes
4
replies
3.1k
views
CIBERSORT: Errors were encountered in input files, run aborted:
deconvolution cibersort
updated 2.5 years ago by 45k • written 4.6 years ago by ★ 4.4k
6
votes
6
replies
2.5k
views
gzip: uniprot_sprot_human.dat.gz: not in gzip format
gunzip error linux ubuntu unzip
4.6 years ago by Sashinika • 0
6
votes
8
replies
6.9k
views
[mem_sam_pe] paired reads have different names. Without -p
bwa alignment next-gen
updated 4.6 years ago by ★ 4.4k • written 7.6 years ago by ▴ 20
3
votes
5
replies
3.0k
views
How to parse protein and dna sequences from prokka generated gbk or gff file based on locus_tag?
genome perl python bash R
updated 4.6 years ago by ★ 30k • written 4.6 years ago by ▴ 120
4
votes
3
replies
2.4k
views
kraken2 no longer supported? - NCBI downloads no longer working
alignment
4.6 years ago by susan.klein ▴ 30
0
votes
3
replies
3.1k
views
Kallisto: Estimated average fragment length
RNA-Seq alignment next-gen sequencing
4.6 years ago by jayeshkumarsundaram ▴ 10
2
votes
1
reply
852
views
How can I download all ncbi genomes files from a given country?
Assembly genome ncbi
updated 4.6 years ago by ★ 1.7k • written 4.6 years ago by • 0
1
vote
0
replies
1.9k
views
Job: Two Research Scientist Positions
Genomics Computational-Biology
updated 2.5 years ago by 45k • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.4k
views
module membership p-value cutoff
wgcna module membership p-value cutoff
updated 4.6 years ago by 20 • written 8.0 years ago by ▴ 530
2
votes
1
reply
1.2k
views
detection of inverted repeats of transposons in Bacteria
sequence transposon inverted repeats
updated 4.6 years ago by ★ 30k • written 4.6 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Job: Biochemist Postdoc Fellow at Berkeley Lab in Berkeley, CA
SAXS SIBYLS
updated 2.3 years ago by 45k • written 4.6 years ago by ▴ 70
0
votes
0
replies
945
views
WGCNA package for R - Gene coexpression analysis
WGCNA coexpression RNA-Seq dendrograme R
4.6 years ago by sofiablancoglez • 0
0
votes
1
reply
901
views
Method detecting surface / bounday Carbon-alpha (or sidechains) atoms of PDB 3d coordinates / points
pdb amino acid surface coordinates protein
updated 4.6 years ago by ★ 30k • written 4.7 years ago by • 0
1
vote
2
replies
1.2k
views
Blast Azure VM
blast azure vm
updated 4.6 years ago by 153k • written 4.6 years ago by ▴ 80
1
vote
5
replies
2.8k
views
Why full-length sequencing is not possible in UMI-based methods in single-cell RNA-seq
rna-seq sequencing
updated 4.6 years ago by ★ 7.7k • written 4.6 years ago by ▴ 20
57
votes
15
replies
23k
views
14 follow
Bioinformatics And Computer Science
updated 4.6 years ago by ▴ 50 • written 15.2 years ago by ▴ 80
2
votes
5
replies
2.1k
views
Singularity file management
singularity container reproducibility
updated 4.6 years ago by ★ 3.5k • written 4.6 years ago by ▴ 90
0
votes
0
replies
718
views
macs2 error ["AtrributeError"
software error sequence gene RNA-Seq genome
4.6 years ago by a.hayat20 • 0
0
votes
0
replies
1.2k
views
Job: Bioinformatician / Computational Biologist (2 years) - Multi-omics research in oncology - CEA (Grenoble, France)
systems-biology omics oncology
updated 2.5 years ago by 45k • written 4.6 years ago by • 0
2
votes
0
replies
617
views
How to Interpret Author's Methods in this article?
GO
4.6 years ago by Firingam ▴ 30
0
votes
0
replies
1.0k
views
calculate the Pearson correlation coefficient of lncRNA-mRNA pairs in the gene modules based on WCGNA
RNA-Seq sequencing ncrna sequence wgcna
4.6 years ago by Shero ▴ 10
0
votes
3
replies
1.6k
views
Local calculation of residue depth in python and MacOS >10.15.x
python protein structure
updated 4.6 years ago by 153k • written 4.6 years ago by • 0
0
votes
0
replies
1.1k
views
Masurca hybrid assembly throwing Error correction of PE reads failed error
assembly genome
4.6 years ago by Pac314 ▴ 10
0
votes
2
replies
964
views
GeneMania Cytoscape plugin organism
cytoscape genemamia
updated 4.6 years ago by ★ 2.1k • written 4.6 years ago by • 0
0
votes
2
replies
1.4k
views
Find genes in methylation enrichment
dmrcate goregion missmethyl enrichment epic array
updated 4.6 years ago by ★ 2.1k • written 5.2 years ago by ▴ 70
4
votes
1
reply
3.2k
views
VCF AF and %Freq
allele-frequency VCF
updated 22 months ago by 45k • written 4.6 years ago by • 0
1
vote
4
replies
4.7k
views
BIOINFORMATICS Problem that i am struggling to solve. Computation of Profile
sequence genome homework
updated 4.6 years ago by 23k • written 4.6 years ago by • 0
0
votes
0
replies
1.1k
views
No annotations in progressiveMauve alignment output
mauve progressiveMauve
4.6 years ago by langziv ▴ 70
0
votes
1
reply
772
views
EUPAN Toolkits error
software error genome
updated 4.6 years ago by ▴ 110 • written 4.6 years ago by • 0
1
vote
6
replies
2.6k
views
Should you include Trimmomatic unpaired reads when assembling by alignment?
alignment assembly sequence
4.6 years ago by RBright21 ▴ 10
2
votes
1
reply
1.2k
views
How to map ENSEMBL Transcript IDs to coding/non-coding/miRNA
RNA-Seq mapping microarray gene expression HTA
updated 4.6 years ago by 20 • written 4.8 years ago by ▴ 100
2
votes
2
replies
5.8k
views
all unique compound structure (SMILES) of PubChem Database
compound pubchem
updated 3.0 years ago by 45k • written 10.1 years ago by ▴ 130
2
votes
2
replies
1.0k
views
Imputation and SNPs pipeline
Imputation SNPs pipeline
4.6 years ago by dzisis1986 ▴ 70
0
votes
1
reply
1.2k
views
GOPLOT FOR CREATING PLOTS IN R
R gene
updated 4.6 years ago by 89k • written 4.6 years ago by ▴ 10
2
votes
2
replies
8.3k
views
Seurat: Assay to use for differential expression in an integrated data
seurat 10x single-cell RNA-Seq
4.6 years ago by firestar ★ 1.7k
121,921 results • Page 715 of 2439
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Comment: Questions regarding GSEA - clusterProfiler
Answer: Questions regarding GSEA - clusterProfiler
Comment: cellranger mkref fail/error
A: read.table does not read in all rows!
A: read.table does not read in all rows!
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
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Recent Replies
Comment: cellranger mkref fail/error by ATpoint 89k
I think OCM = https://www.10xgenomics.com/support/software/cell-ranger/latest/getting-started/cr-3p-what-is-cellplex#on-chip Seconding to…
Comment: miRNA low mapping ratings by Ant ▴ 50
The first one it's the results from Cutadapter and the second block from miRDeep2.
Comment: miRNA low mapping ratings by Ant ▴ 50
Thanks for the reply, when running: cutadapt -a AACTGTAGGCACCATCAAT -M 30 -o example_trimmed.fastq.gz data/xxx.fastq.gz, the sequence le…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by GenoMax 153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling by san96 ▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file by saruman ▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error by GenoMax 153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error by tatsispolychronis • 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error by GenoMax 153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence by Joe 22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample by Pierre Lindenbaum 166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files by GenoMax 153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence by dthorbur ★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files by SomeOne ▴ 240
Thank you. Based on the description these two look really what i wanted to see.
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