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1,000 results • Page 1 of 20
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3
votes
3
replies
263
views
Forum: [Meta] Use of AI
Artificial ChatGPT Intelligence Biostars AI
updated 8 hours ago by 129k • written 1 day ago by ★ 2.9k
2
votes
2
replies
175
views
Forum: Colleges
Colleges india universities
updated 4 days ago by 39k • written 4 days ago by • 0
19
votes
15
replies
1.3k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 12 days ago by 39k • written 5.1 years ago by 5.3k
120
votes
33
replies
36k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 26 days ago by ★ 2.3k • written 9.8 years ago by 11k
100
votes
38
replies
28k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 27 days ago by 21k • written 9.6 years ago by ★ 3.6k
26
votes
12
replies
6.9k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 29 days ago by ▴ 10 • written 9.6 years ago by ▴ 50
170
votes
43
replies
16k
views
25 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
updated 5 weeks ago by 11k • written 10.2 years ago by 98k
0
votes
2
replies
322
views
Forum: How to start in bioinformatics?
career
updated 25 days ago by 39k • written 6 weeks ago by • 0
3
votes
4
replies
586
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 weeks ago by cwaingartentrabajo • 0
12
votes
5
replies
733
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 weeks ago by ▴ 20 • written 7 weeks ago by • 0
18
votes
14
replies
1.1k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
5 weeks ago by Simon ▴ 40
0
votes
0
replies
3.3k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
8 weeks ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
863
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 8 weeks ago by ★ 2.9k • written 9 weeks ago by ▴ 30
4
votes
2
replies
289
views
Forum: advice on course selection for a bioinformatics career.
career
updated 10 weeks ago by 98k • written 10 weeks ago by • 0
0
votes
1
reply
235
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 12 weeks ago by 129k • written 12 weeks ago by • 0
3
votes
1
reply
306
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 12 weeks ago by 129k • written 12 weeks ago by 4.8k
5
votes
3
replies
451
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 12 weeks ago by 21k • written 12 weeks ago by ▴ 60
18
votes
10
replies
1.1k
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
12 weeks ago by bompipi95 ▴ 120
1
vote
0
replies
195
views
Forum: Penetrance versus heritability
penetrance heritability
3 months ago by tacrolimus ▴ 110
10
votes
15
replies
1.0k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 3 days ago by 21k • written 3 months ago by ★ 1.5k
8
votes
4
replies
474
views
Forum: Implementing FAIR data principles to a bioinformatics lab
data
updated 3 months ago by 21k • written 3 months ago by ★ 1.5k
0
votes
0
replies
219
views
Forum: NGSrich - hg38
Coverage NGSrich
3 months ago by RK • 0
5
votes
5
replies
684
views
Forum: Bioinformatics - how to start?
molecular-biology
updated 3 months ago by ★ 23k • written 3 months ago by • 0
8
votes
8
replies
1.2k
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 4 months ago by ▴ 10 • written 5 months ago by • 0
7
votes
3
replies
653
views
Forum: Find a research paper for reproducing the results
research paper
updated 4 months ago by 129k • written 4 months ago by ★ 2.5k
1
vote
1
reply
415
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 5 months ago by ★ 3.1k • written 5 months ago by • 0
6
votes
12
replies
1.1k
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
5 months ago by Lluís R. ★ 1.2k
15
votes
11
replies
1.9k
views
7 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 7 weeks ago by ▴ 590 • written 6 months ago by ▴ 320
18
votes
10
replies
1.4k
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 6 months ago by 52k • written 6 months ago by 98k
0
votes
2
replies
2.9k
views
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
6 months ago by SushiRoll ▴ 100
7
votes
2
replies
465
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
4 months ago by Matthias Zepper 3.7k
5
votes
4
replies
683
views
Forum: Best BAM viewer in 2022
bam sam tool-recommendation
6 months ago by Cornelius ▴ 60
1.2k
votes
206
replies
50k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 4 days ago by ★ 1.2k • written 12.2 years ago by 21k
8
votes
4
replies
730
views
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
6 months ago by dlaehnemann ▴ 10
10
votes
13
replies
1.8k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 6 months ago by 6.0k • written 6 months ago by ▴ 10
0
votes
2
replies
610
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 5 months ago by 39k • written 8 months ago by • 0
4
votes
5
replies
697
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
career masters
updated 16 days ago by 39k • written 7 months ago by • 0
1
vote
1
reply
509
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 5 months ago by 4.8k • written 7 months ago by ▴ 30
3
votes
6
replies
648
views
Forum: How to become a moderator and other ways of contributing to Biostars
meta biostars
updated 16 days ago by 39k • written 8 months ago by 6.0k
2
votes
3
replies
562
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 8 months ago by 21k • written 8 months ago by ▴ 10
19
votes
13
replies
1.6k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 8 months ago by 6.1k • written 8 months ago by ▴ 40
8
votes
13
replies
1.6k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 9 months ago by • 0 • written 9 months ago by ★ 1.2k
4
votes
4
replies
902
views
Forum: Bioinformatics analogies
Bioinformatics
updated 9 months ago by 98k • written 9 months ago by ▴ 40
2
votes
4
replies
750
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
statistics metascience power sample-size
updated 9 weeks ago by 39k • written 9 months ago by ▴ 210
2
votes
4
replies
567
views
Forum: strand specific data
strand DNA RNA specific coding
9 months ago by upasana • 0
3
votes
0
replies
431
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
9 months ago by Vincent Laufer ★ 2.9k
7
votes
14
replies
1.7k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 9 months ago by 2.6k • written 9 months ago by ▴ 80
4
votes
4
replies
1.0k
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 5 months ago by 39k • written 11 months ago by ★ 2.3k
2
votes
7
replies
911
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 10 months ago by 39k • written 10 months ago by ▴ 20
6
votes
3
replies
1.2k
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 10 months ago by 3.7k • written 10 months ago by 17k
1,000 results • Page 1 of 20
Recent Votes
Comment: STAR GenomeIndex output (which is the BAM file?)
Answer: [Meta] Use of AI
Answer: h5ad cellxgene to R
Comment: What is the benefit of knowing the source of contamination when we have RNAseq d
Answer: Rna-Seq Pipeline
Comment: Create customized gene annotation file
Answer: [Meta] Use of AI
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Recent Replies
Answer: Convert Bam file to Fastq by Michael 52k
I think your code is incorrect bash syntax. I think you want something like this: sort bam_headers.txt > bam_haeders-sorted.txt # c…
Comment: Combination of ROC CURVE by Maria17 ▴ 20
For example, if three targets are combined and the mean value is plotted, the different combinations give different numbers, but there are …
Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental by Kermit ▴ 80
neither simple nor helpful
Comment: Convert Bam file to Fastq by Michael 52k
At first, I would trust samtools to do the right thing but of course it doesn't hurt to double check. But I think the crux is what is in fa…
Comment: Convert Bam file to Fastq by Pierre Lindenbaum 154k
paste fastq1_read_ids.txt fastq2_read_ids.txt is a tabular file with two column. Is it the same for bam_read_names.txt ?
Comment: variant allelic fraction by Pierre Lindenbaum 154k
this is not a field provided by VEP.
Answer: WGCNA Trait File Issues by Jennifer M • 0
![enter image description here][1] [1]: /media/images/0cf4eaa7-9550-4bbb-b43e-208dc787
Comment: Pairwise Alignment by WouterDeCoster 47k
> for whole genome analysis What do you mean with that? You provide too little information for us to answer your question.
Comment: Getting species names and taxa id from assembly accession number by GenoMax 129k
There must be some temporary glitch. Following command works (via EntrezDirect): $ esearch -db assembly -query GCA_000001405.29 | esu…
Comment: h5ad cellxgene to R by abmmki • 0
matrix=adata.X.toarray() feature_names = adata.var['feature_name'] pd.DataFrame(data=matrix, index=adata.obs_names, c…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: h5ad cellxgene to R by abmmki • 0
I am trying use the same data and same method. But when I read the csv expression matrix in R, it frozen. Could you share your final seurat…
Comment: (ERR): "index/Trinity.fa" does not exist or is not a Bowtie 2 index Exiting now by eimanpharmacist ▴ 20
I think the problem in bowtie2 installation. it was installed using this: `conda install -c bioconda bowtie2` I removed it then re-installe…
Comment: Where to get the molecular subtype information of STAD sample in TCGA by Hamid Ghaedi 2.9k
Give `TCGAbiolinks` package a try.
Comment: How to calculate TPM from featureCounts output by survive • 0
hi, So i will need to download the raw .fastq file from SRA and run salmon/Kallisto, instead of using the featureCounts?
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