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164 results • Page 1 of 4
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6
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6
replies
280
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6 follow
Forum: R - A bioinformatic analysis programming language for NGS
bioinformatics R NGS BI
updated 3 hours ago by 32k • written 1 day ago by ▴ 120
12
votes
13
replies
357
views
Forum: Bioinformatics startup market analysis
startup
1 day ago by gtechbio ▴ 30
1
vote
1
reply
77
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 2 days ago by 12k • written 2 days ago by ▴ 20
2
votes
1
reply
4.4k
views
Forum: Biostar Forum Posting Guidelines
Forum
written 9.0 years ago by 87k
14
votes
7
replies
236
views
6 follow
Forum: What to put in my Github
Github
updated 2 days ago by ★ 2.4k • written 3 days ago by ▴ 20
281
votes
54
replies
10k
views
39 follow
Forum: What Do You Waste Your Time On
bioinformatics scripting Forum
updated 4 days ago by ▴ 170 • written 7.9 years ago by 8.6k
11
votes
5
replies
288
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
6 days ago by tiagobellintani ▴ 20
17
votes
20
replies
699
views
6 follow
Forum: bioinformatics thesis
thesis
updated 4 days ago by 32k • written 7 days ago by ▴ 30
2
votes
11
replies
465
views
7 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
6 days ago by hafiz.talhamalik ▴ 300
44
votes
23
replies
4.4k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 10 days ago by 32k • written 3.1 years ago by 98k
18
votes
8
replies
504
views
8 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 11 days ago by 12k • written 17 days ago by 20k
4
votes
2
replies
241
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 14 days ago by 99k • written 15 days ago by ▴ 570
1
vote
1
reply
122
views
Forum: Sharing frequently asked questions about microbial genome sequencing II
microbial faq genome sequencing meta
updated 16 days ago by 87k • written 16 days ago by ▴ 120
53
votes
11
replies
2.3k
views
13 follow
Forum: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
bioinformatics Forum library
written 6 months ago by 5.8k
1
vote
0
replies
102
views
Forum: Sharing frequently asked questions about microbial genome sequencing I
sequencing microbial faq genome BI
16 hours ago by guoxuantong ▴ 120
0
votes
1
reply
128
views
Forum: Apache Spark on AWS
apachespark
updated 24 days ago by 20k • written 24 days ago by ★ 1.1k
9
votes
5
replies
446
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome Forum
24 days ago by nickroseae ▴ 10
50
votes
20
replies
3.4k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics Forum
updated 25 days ago by 48k • written 5.1 years ago by ★ 1.0k
3
votes
2
replies
293
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
machine learning computer scientist Forum
updated 26 days ago by 98k • written 26 days ago by • 0
3
votes
5
replies
411
views
Forum: Hide Emails from Guests
biostars Forum
written 4 months ago by ▴ 570
23
votes
9
replies
2.8k
views
8 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz visualisation python Forum
27 days ago by Joe 19k
170
votes
88
replies
12k
views
23 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
written 13 months ago by 87k
0
votes
0
replies
103
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq R sequencing Forum
updated 4 weeks ago by 10k • written 4 weeks ago by ▴ 40
28
votes
7
replies
705
views
Forum: Do you have favorite icons for bioinformatics?
software error Forum
updated 5 weeks ago by 10k • written 5 weeks ago by ▴ 140
0
votes
0
replies
108
views
Forum: Determining Heteroplasmy per sample
Heteroplasmy per sample in VCF file bcftools Forum
5 weeks ago by katendejohnspeke • 0
4
votes
4
replies
188
views
Forum: Looking for a CS PhD Program + tips
PhD Forum
5 weeks ago by lodicakes • 0
16
votes
4
replies
678
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
bioconda conda bowtie2 tbb software error Forum
updated 5 weeks ago by 98k • written 5 weeks ago by ▴ 110
6
votes
4
replies
3.9k
views
Forum: Chip-Seq Data Analysis
chip-seq Forum
updated 5 weeks ago by • 0 • written 8.9 years ago by ★ 1.1k
1
vote
2
replies
560
views
Forum: Discussion on effects of Gain-of-Function mutations
protein missense variants Forum
updated 5 weeks ago by 48k • written 5 weeks ago by ★ 2.0k
121
votes
44
replies
21k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 4.6 years ago by ▴ 780
2
votes
0
replies
225
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
bioinformatics courses Forum
updated 6 weeks ago by 32k • written 6 weeks ago by ▴ 20
19
votes
4
replies
367
views
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2020?
SNP forum survey papers bioinformatics Forum
updated 6 weeks ago by ★ 10k • written 6 weeks ago by ★ 1.1k
1
vote
0
replies
147
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open data Forum
6 weeks ago by Emily_Ensembl 22k
0
votes
1
reply
141
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
job Forum
updated 6 weeks ago by 99k • written 6 weeks ago by ★ 1.0k
13
votes
3
replies
5.6k
views
Forum: Can We Have A Collection Of Interesting Research Topics?
project phd Forum
updated 6 weeks ago by 9.7k • written 8.9 years ago by 48k
15
votes
9
replies
349
views
7 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education Forum
written 8 weeks ago by ▴ 40
1
vote
4
replies
154
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP Forum
7 weeks ago by mfshiller ▴ 10
1
vote
4
replies
342
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis Forum
7 weeks ago by cyntsc10 • 0
4
votes
6
replies
274
views
Forum: What are some areas of bioinformatics that are overdone?
meta Forum
updated 7 weeks ago by 87k • written 7 weeks ago by 20k
3
votes
3
replies
174
views
Forum: How to change my email address
email address change account management Forum
7 weeks ago by Bosberg ▴ 30
12
votes
1
reply
454
views
Forum: Best programming language for bioinformatics - R Language
R programming Forum
updated 7 weeks ago by 48k • written 7 weeks ago by ▴ 120
2
votes
5
replies
144
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R Forum
8 weeks ago by steve ★ 2.9k
6
votes
5
replies
250
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment Forum
updated 8 weeks ago by 32k • written 8 weeks ago by ▴ 20
40
votes
24
replies
805
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
R Python Programming Scripting Forum
updated 9 weeks ago by 9.7k • written 9 weeks ago by ▴ 30
0
votes
3
replies
462
views
Forum: MOOC for AI and Machine learning for Bioinformatics
AI/ML Forum
updated 9 weeks ago by ▴ 240 • written 7 months ago by ★ 1.4k
0
votes
0
replies
124
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq Forum
9 weeks ago by Seaweed • 0
56
votes
43
replies
8.6k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
RNA-Seq NGS alignment genome sequence Forum
updated 9 weeks ago by ▴ 20 • written 2.2 years ago by 9.6k
22
votes
7
replies
574
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
RNA-Seq R cytoscape Forum
written 12 weeks ago by ▴ 50
7
votes
4
replies
252
views
Forum: Employer Insights for Bioinformatics Job Seekers
career job advice Forum
updated 10 weeks ago by ▴ 10 • written 10 weeks ago by ▴ 120
7
votes
19
replies
405
views
Forum: NGS RNA-Seq Analysis Pipeline Tophat vs STAR
RNA-Seq Tool Forum
written 3 months ago by ▴ 10
164 results • Page 1 of 4
Recent Votes
Comment: A simple tutorial for a complex ComplexHeatmap
Answer: Hunting invisible characters?
BWA error: no ID within the read group line
Answer: differential expression analysis
Answer: How to verify putative miRNA
Comment: How to make consensus sequence from aligned reads ?
Answer: GSEA for RNA_seq dataset
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Recent Replies
Comment: How can I Extract Transposable element from a new genome assembly? by GenoMax 99k
Align your assemblies to each other using an aligner like `lastz` ([**LINK**][1]). You could also use `blat` if you are sure the assemblies…
Comment: Trimmomatic-0.36 not finding adapter directory by GenoMax 99k
It is going to take as long as it takes. You need to be patient and wait until the prompt returns. Based on speed of your CPU/disk things c…
Comment: Hunting invisible characters? by GenoMax 99k
You could have looked at the file using `cat -vet` which would have shown all characters in the file. Printable and non.
Comment: Can't count features with featurecount by avelarbio46 ▴ 10
I'm not sure about three things: What does -M and -O do exactly that could benefit in my case? Why should I specify -t if I don't necessa…
Comment: Hunting invisible characters? by geneticatt ▴ 120
Thank you, using `dos2unix` worked perfectly!
Answer: Hunting invisible characters? by Mensur Dlakic ★ 10k
You may want to read [**this**][1]. I think you may be able to fix your adaper file by typing: dos2unix i5R.txt If an error pops …
Comment: RNA seq analysis; two samples by Ram 32k
Please do not delete posts that have comments/answers.
Comment: ICE normalization using JuicerTools by sckinta ▴ 610
Is there a way to extract ICE bias from balanced .cool file? I know that you can find weight associated with each bin by `cooler dump --bal…
Comment: How to verify putative miRNA by boczniak767 ▴ 740
Yeah, miRNA could be only verified in wet-lab. Take a look at [stem-loop PCR][1]. I've used it and it works really well. [1]: https://j…
Comment: R - A bioinformatic analysis programming language for NGS by Ram 32k
Because this is a plain copy-paste from the novogene page, it has numbers (pointers to specific references that the source has), but not th…
Comment: X amino acid in ensembl by Mensur Dlakic ★ 10k
This is correct. `X` means any amino acid. Most substitution matrices apply identical penalty (`-1`) when any amino-acid is aligned with X …
Answer: differential expression analysis by Mensur Dlakic ★ 10k
I think the numbers you cite are the most extreme values that people will still accept. In most cases I would go for lower p-values (at lea…
Comment: Trimmomatic-0.36 not finding adapter directory by willbrown • 0
The two reads are roughly 23GB each, the only other large output file generated in my last attempt was the trimlog file, which was only 1.5…
Comment: A simple tutorial for a complex ComplexHeatmap by ATpoint 48k
You always normalize data before z-scoring it. The Z-score just calculate like the "deviation" of every sample from the mean of all samples…
Answer: GSEA for RNA_seq dataset by ATpoint 48k
I tried to explain my understanding of (f)GSEA and why one should use all (expressed) genes here over at this Bioc post: https://support…
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