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1,000 results • Page
1 of 20
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Rank
Views
Votes
Replies
4
votes
6
replies
536
views
6 follow
Forum:
Bioinformatics: what do you think of it in the next 20 years?
future
updated 2 days ago by
Ram
41k • written 4 days ago by
Daniel
• 0
1
vote
1
reply
287
views
Forum:
want to work in open source project/project in bioinformatics
project
updated 2 days ago by
Ram
41k • written 11 days ago by
Afeef
• 0
2
votes
5
replies
666
views
Forum:
Current Trends in Bioinformatics
structural-bioinformatics
updated 2 days ago by
Ram
41k • written 29 days ago by
Paulo
• 0
21
votes
11
replies
2.0k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 15 days ago by
Jeremy Leipzig
22k • written 9 months ago by
bompipi95
▴ 140
175
votes
46
replies
18k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
17 days ago by
Istvan Albert
99k
3
votes
2
replies
385
views
Forum:
RNA-Seq data analysis - question
Python
RNA-Seq
R
updated 29 days ago by
fturner
▴ 10 • written 29 days ago by
sil_bioinfo
▴ 40
0
votes
0
replies
192
views
Forum:
How to learn bioinformatics online?
self-education
education
learning
updated 5 weeks ago by
Ram
41k • written 5 weeks ago by
Brian Rey | BioLearn
• 0
6
votes
5
replies
2.0k
views
Forum:
Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 weeks ago by
tshtatland
▴ 180
7
votes
9
replies
1.1k
views
6 follow
Forum:
Mentor for a beginner bioinformatics student
project
mentor
5 weeks ago by
UT_FAN
▴ 40
0
votes
0
replies
225
views
Forum:
Steps after doublet detection in single cell data
scRNA
doublet
8 weeks ago by
ishwarvh
• 0
0
votes
0
replies
194
views
Forum:
Automated Checks And QA
retrospective
8 weeks ago by
Sasha
▴ 770
7
votes
13
replies
981
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 weeks ago by
Ram
41k • written 9 weeks ago by
kieran
▴ 10
21
votes
7
replies
11k
views
Forum:
Bioinformatics short paper journal resource [software/webapps/database]
journal
software
webapp
updated 9 weeks ago by
Gennady Khvorykh
▴ 100 • written 7.7 years ago by
Sukhi Singh
11k
3
votes
3
replies
586
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 10 weeks ago by
Ram
41k • written 11 weeks ago by
S
• 0
19
votes
14
replies
1.4k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 11 weeks ago by
Jeremy Leipzig
22k • written 11 weeks ago by
vincenthus
▴ 70
19
votes
10
replies
1.2k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 11 weeks ago by
vincenthus
▴ 70 • written 3 months ago by
Sasha
▴ 770
9
votes
6
replies
1.5k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 12 weeks ago by
ATpoint
78k • written 12 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
423
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 3 months ago by
Ram
41k • written 3 months ago by
Fouad
▴ 20
3
votes
6
replies
994
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
3 months ago by
anasjamshed
▴ 120
2
votes
5
replies
727
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 7 weeks ago by
Ram
41k • written 3 months ago by
rj.rezwan
• 0
2
votes
9
replies
893
views
Forum:
open source projects looking for contributors
open-source
updated 12 weeks ago by
vincenthus
▴ 70 • written 3 months ago by
claudiofr
▴ 20
0
votes
0
replies
385
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 3 months ago by
Ram
41k • written 3 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
744
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 3 months ago by
GenoMax
136k • written 3 months ago by
James Reeve
▴ 130
0
votes
0
replies
343
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 3 months ago by
Ram
41k • written 3 months ago by
RM123
▴ 10
1
vote
3
replies
554
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 3 months ago by
GenoMax
136k • written 3 months ago by
morovatunc
▴ 550
11
votes
8
replies
963
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 3 months ago by
Ram
41k • written 4 months ago by
joey
▴ 10
363
votes
58
replies
66k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 7 weeks ago by
Ram
41k • written 13.8 years ago by
Istvan Albert
99k
1
vote
2
replies
10k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
4 months ago by
LauferVA
3.8k
0
votes
3
replies
3.7k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 12 months ago by
SushiRoll
▴ 120
2
votes
3
replies
600
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 4 months ago by
GenoMax
136k • written 5 months ago by
LauferVA
3.8k
0
votes
2
replies
832
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 5 months ago by
Asaf
10k • written 5 months ago by
Davide
• 0
33
votes
23
replies
3.4k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 5 months ago by
Jeremy Leipzig
22k • written 6 months ago by
LauferVA
3.8k
7
votes
8
replies
1.3k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
5 months ago by
K
• 0
2
votes
3
replies
655
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 6 months ago by
Mensur Dlakic
★ 25k • written 6 months ago by
Andy
• 0
0
votes
0
replies
330
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 6 months ago by
Ram
41k • written 6 months ago by
nick_b55
▴ 10
7
votes
4
replies
870
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 6 months ago by
Ram
41k • written 6 months ago by
LauferVA
3.8k
2
votes
2
replies
453
views
Forum:
Colleges
Colleges
india
universities
updated 6 months ago by
Ram
41k • written 6 months ago by
mahimanepalli36
• 0
19
votes
15
replies
1.7k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 6 months ago by
Ram
41k • written 5.6 years ago by
Bastien Hervé
5.3k
120
votes
33
replies
38k
views
24 follow
Forum:
Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 7 months ago by
carlopecoraro2
★ 2.4k • written 10.3 years ago by
Eric Normandeau
11k
100
votes
38
replies
29k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 14 days ago by
Jeremy Leipzig
22k • written 10.1 years ago by
14134125465346445
★ 3.6k
26
votes
12
replies
7.3k
views
6 follow
Forum:
Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 7 months ago by
zyan2005
▴ 10 • written 10.1 years ago by
johnblue81
▴ 50
0
votes
2
replies
623
views
Forum:
How to start in bioinformatics?
career
updated 7 months ago by
Ram
41k • written 7 months ago by
caffrey
• 0
3
votes
4
replies
1.1k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
7 months ago by
cwaingartentrabajo
• 0
12
votes
5
replies
1.5k
views
6 follow
Forum:
Bioinformatics opportunities in Europe?
career
updated 7 months ago by
alwayshope
▴ 40 • written 7 months ago by
melaniem
• 0
18
votes
14
replies
1.7k
views
7 follow
Forum:
What's the general view on point & click bioinformatics for routine analyses?
ngs
RNA-Seq
next-gen-sequencing
7 months ago by
Simon
▴ 40
0
votes
0
replies
6.9k
views
Forum:
Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline
Calling
Variant
Capture
Sequencing
8 months ago by
Alexandre Eeckhoutte
• 0
11
votes
11
replies
1.4k
views
7 follow
Forum:
Any tips in landing a bioinformatic job?
Spain
R
updated 8 months ago by
LauferVA
3.8k • written 8 months ago by
Jorge
▴ 30
4
votes
2
replies
579
views
Forum:
advice on course selection for a bioinformatics career.
career
updated 8 months ago by
Istvan Albert
99k • written 8 months ago by
Aaron
• 0
0
votes
1
reply
450
views
Forum:
Graduate in molecular biology and genetics
biology
genetics
Molecular
updated 9 months ago by
GenoMax
136k • written 9 months ago by
zamzammahmud20
• 0
4
votes
1
reply
647
views
Forum:
Open problems in genomics 2023
genomics
pangenomics
updated 9 months ago by
GenoMax
136k • written 9 months ago by
colindaven
5.8k
1,000 results • Page
1 of 20
Recent Votes
C: PCA vs ICA prior to t-SNE or UMAP
C: PCA vs ICA prior to t-SNE or UMAP
Answer: Calculate GC content for entire chromosome
Comment: Annotation Visualization IGV
Comment: Annotation Visualization IGV
Answer: Execute R command on specific termimal
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
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Recent Awards •
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Scholar
to
andres.firrincieli
3.5k
Popular Question
to
Jaykumar
▴ 50
Popular Question
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samreen.jasvi
• 0
Teacher
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35k
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★ 16k
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Mr Locuace
▴ 150
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benjamin.pyenson
• 0
Recent Replies
Comment: Resolving over clustered NGS with Q-scores
by
sam.himes92
• 0
The system that we used was [Aviti][1]. Our sequencing core was the one who quantified the loading/library concentration. Sorry I don't hav…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
by
Alex Reynolds
35k
I modified the answer with an approach for that use case.
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
by
Ram
41k
OP is looking for overlapping genes - genes with presumably different gene IDs that share some loci. I think the `genes.bed` creation logic…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans?
by
Alex Reynolds
35k
Note: The file `snps.bed` will be very large. You'll need sufficient disk space for this step.
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
by
Alex Reynolds
35k
Given files `genes.bed` and `snps.bed`, you could do something like: ``` $ bedmap --echo --echo-map-id --delim '\t' genes.bed snps.bed > a…
Answer: How to add exon annotations to genome annotation
by
alex.zaccaron
▴ 380
You can use [AGAT][1] to process your annotation file to add the missing exons. I believe `agat_convert_sp_gxf2gxf.pl -g no_exons.gff -o wi…
Comment: Annotation Visualization IGV
by
Pierre Lindenbaum
158k
and you got answer that should be validate (green tick), or people asked you questions but got no answers.
Comment: Annotation Visualization IGV
by
awhale01
• 0
Correct I have asked those questions before.
Comment: Annotation Visualization IGV
by
Pierre Lindenbaum
158k
you asked questions before: review, comment and/or validate them please: https://www.biostars.org/p/9530777/ ; https://www.biostars.org/p/9…
Comment: Ambient RNA removal method that generates whole (integer) counts
by
EK
• 0
Thanks, Jared. Sounds like rounding counts is the simplest approach for now. :)
Comment: Resolving over clustered NGS with Q-scores
by
Trivas
★ 1.5k
Could you tell us which sequencer you used, how you quantified your library size and concentration, and what your loading concentration was…
Comment: Resolving over clustered NGS with Q-scores
by
sam.himes92
• 0
I should have mentioned, we ran both Read 1 and 2 well past the points of interest. For each read we ran 75 cycles.
Answer: Resolving over clustered NGS with Q-scores
by
Trivas
★ 1.5k
It might be because Illumina recommends 26 cycles for Read 1: https://knowledge.illumina.com/instrumentation/general/instrumentation-genera…
Comment: Resolving over clustered NGS with Q-scores
by
sam.himes92
• 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores
by
ATpoint
78k
Has phiX been spiked in to increase nucleotide diversity.
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