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1,000 results • Page 1 of 20
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4
votes
6
replies
536
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 2 days ago by 41k • written 4 days ago by • 0
1
vote
1
reply
287
views
Forum: want to work in open source project/project in bioinformatics
project
updated 2 days ago by 41k • written 11 days ago by • 0
2
votes
5
replies
666
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 2 days ago by 41k • written 29 days ago by • 0
21
votes
11
replies
2.0k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 15 days ago by 22k • written 9 months ago by ▴ 140
175
votes
46
replies
18k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
17 days ago by Istvan Albert 99k
3
votes
2
replies
385
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 29 days ago by ▴ 10 • written 29 days ago by ▴ 40
0
votes
0
replies
192
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 5 weeks ago by 41k • written 5 weeks ago by • 0
6
votes
5
replies
2.0k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
5 weeks ago by tshtatland ▴ 180
7
votes
9
replies
1.1k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
5 weeks ago by UT_FAN ▴ 40
0
votes
0
replies
225
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
8 weeks ago by ishwarvh • 0
0
votes
0
replies
194
views
Forum: Automated Checks And QA
retrospective
8 weeks ago by Sasha ▴ 770
7
votes
13
replies
981
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 weeks ago by 41k • written 9 weeks ago by ▴ 10
21
votes
7
replies
11k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 9 weeks ago by ▴ 100 • written 7.7 years ago by 11k
3
votes
3
replies
586
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 10 weeks ago by 41k • written 11 weeks ago by • 0
19
votes
14
replies
1.4k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 11 weeks ago by 22k • written 11 weeks ago by ▴ 70
19
votes
10
replies
1.2k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 11 weeks ago by ▴ 70 • written 3 months ago by ▴ 770
9
votes
6
replies
1.5k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 12 weeks ago by 78k • written 12 months ago by ▴ 30
3
votes
2
replies
423
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 3 months ago by 41k • written 3 months ago by ▴ 20
3
votes
6
replies
994
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
3 months ago by anasjamshed ▴ 120
2
votes
5
replies
727
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 weeks ago by 41k • written 3 months ago by • 0
2
votes
9
replies
893
views
Forum: open source projects looking for contributors
open-source
updated 12 weeks ago by ▴ 70 • written 3 months ago by ▴ 20
0
votes
0
replies
385
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 3 months ago by 41k • written 3 months ago by ▴ 20
3
votes
4
replies
744
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 3 months ago by 136k • written 3 months ago by ▴ 130
0
votes
0
replies
343
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 3 months ago by 41k • written 3 months ago by ▴ 10
1
vote
3
replies
554
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 3 months ago by 136k • written 3 months ago by ▴ 550
11
votes
8
replies
963
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 3 months ago by 41k • written 4 months ago by ▴ 10
363
votes
58
replies
66k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 7 weeks ago by 41k • written 13.8 years ago by 99k
1
vote
2
replies
10k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
4 months ago by LauferVA 3.8k
0
votes
3
replies
3.7k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 12 months ago by ▴ 120
2
votes
3
replies
600
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 4 months ago by 136k • written 5 months ago by 3.8k
0
votes
2
replies
832
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 5 months ago by 10k • written 5 months ago by • 0
33
votes
23
replies
3.4k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 5 months ago by 22k • written 6 months ago by 3.8k
7
votes
8
replies
1.3k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
5 months ago by K • 0
2
votes
3
replies
655
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 6 months ago by ★ 25k • written 6 months ago by • 0
0
votes
0
replies
330
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 6 months ago by 41k • written 6 months ago by ▴ 10
7
votes
4
replies
870
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 6 months ago by 41k • written 6 months ago by 3.8k
2
votes
2
replies
453
views
Forum: Colleges
Colleges india universities
updated 6 months ago by 41k • written 6 months ago by • 0
19
votes
15
replies
1.7k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 6 months ago by 41k • written 5.6 years ago by 5.3k
120
votes
33
replies
38k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 7 months ago by ★ 2.4k • written 10.3 years ago by 11k
100
votes
38
replies
29k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 14 days ago by 22k • written 10.1 years ago by ★ 3.6k
26
votes
12
replies
7.3k
views
6 follow
Forum: Mapping God Found ‘Scientifically Dishonest’ By Anonymous Peer Reviewers
ngs
updated 7 months ago by ▴ 10 • written 10.1 years ago by ▴ 50
0
votes
2
replies
623
views
Forum: How to start in bioinformatics?
career
updated 7 months ago by 41k • written 7 months ago by • 0
3
votes
4
replies
1.1k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
7 months ago by cwaingartentrabajo • 0
12
votes
5
replies
1.5k
views
6 follow
Forum: Bioinformatics opportunities in Europe?
career
updated 7 months ago by ▴ 40 • written 7 months ago by • 0
18
votes
14
replies
1.7k
views
7 follow
Forum: What's the general view on point & click bioinformatics for routine analyses?
ngs RNA-Seq next-gen-sequencing
7 months ago by Simon ▴ 40
0
votes
0
replies
6.9k
views
Forum: Optimal approach for variant calling with 3 diluted germline sample in one sequencing - Capture Sequencing
germline Calling Variant Capture Sequencing
8 months ago by Alexandre Eeckhoutte • 0
11
votes
11
replies
1.4k
views
7 follow
Forum: Any tips in landing a bioinformatic job?
Spain R
updated 8 months ago by 3.8k • written 8 months ago by ▴ 30
4
votes
2
replies
579
views
Forum: advice on course selection for a bioinformatics career.
career
updated 8 months ago by 99k • written 8 months ago by • 0
0
votes
1
reply
450
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 9 months ago by 136k • written 9 months ago by • 0
4
votes
1
reply
647
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 9 months ago by 136k • written 9 months ago by 5.8k
1,000 results • Page 1 of 20
Recent Votes
C: PCA vs ICA prior to t-SNE or UMAP
C: PCA vs ICA prior to t-SNE or UMAP
Answer: Calculate GC content for entire chromosome
Comment: Annotation Visualization IGV
Comment: Annotation Visualization IGV
Answer: Execute R command on specific termimal
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
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Recent Replies
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
The system that we used was [Aviti][1]. Our sequencing core was the one who quantified the loading/library concentration. Sorry I don't hav…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
I modified the answer with an approach for that use case.
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Ram 41k
OP is looking for overlapping genes - genes with presumably different gene IDs that share some loci. I think the `genes.bed` creation logic…
Comment: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Note: The file `snps.bed` will be very large. You'll need sufficient disk space for this step.
Answer: Where can I get a list of SNPs mapping overlapping genes in humans? by Alex Reynolds 35k
Given files `genes.bed` and `snps.bed`, you could do something like: ``` $ bedmap --echo --echo-map-id --delim '\t' genes.bed snps.bed > a…
Answer: How to add exon annotations to genome annotation by alex.zaccaron ▴ 380
You can use [AGAT][1] to process your annotation file to add the missing exons. I believe `agat_convert_sp_gxf2gxf.pl -g no_exons.gff -o wi…
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
and you got answer that should be validate (green tick), or people asked you questions but got no answers.
Comment: Annotation Visualization IGV by awhale01 • 0
Correct I have asked those questions before.
Comment: Annotation Visualization IGV by Pierre Lindenbaum 158k
you asked questions before: review, comment and/or validate them please: https://www.biostars.org/p/9530777/ ; https://www.biostars.org/p/9…
Comment: Ambient RNA removal method that generates whole (integer) counts by EK • 0
Thanks, Jared. Sounds like rounding counts is the simplest approach for now. :)
Comment: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
Could you tell us which sequencer you used, how you quantified your library size and concentration, and what your loading concentration was…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
I should have mentioned, we ran both Read 1 and 2 well past the points of interest. For each read we ran 75 cycles.
Answer: Resolving over clustered NGS with Q-scores by Trivas ★ 1.5k
It might be because Illumina recommends 26 cycles for Read 1: https://knowledge.illumina.com/instrumentation/general/instrumentation-genera…
Comment: Resolving over clustered NGS with Q-scores by sam.himes92 • 0
Yes at 5%.
Comment: Resolving over clustered NGS with Q-scores by ATpoint 78k
Has phiX been spiked in to increase nucleotide diversity.
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