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298
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Forum: Opinions on publishing Research as a Blog?
bioinformatics publishing
2 days ago by ponganta ▴ 270
31
votes
28
replies
1.1k
views
18 follow
Forum: What's the biggest thing you dislike about bioinformatics?
bioinformatics
updated 2 days ago by 8.9k • written 4 days ago by ▴ 20
6
votes
4
replies
235
views
Forum: What are the major advances in Bioinformatics since 2016
Bioinformatics Scientist
updated 3 days ago by 88k • written 4 days ago by ▴ 20
1
vote
0
replies
82
views
Forum: Potential applications of the AlfaFold ?
protein-folding
updated 4 days ago by 75k • written 4 days ago by ▴ 20
9
votes
3
replies
199
views
Forum: How to manage Biostar email subscriptions?
biostars
updated 7 days ago by 20 • written 7 days ago by ▴ 470
20
votes
12
replies
32k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
awk perl python Forum
updated 21 days ago by ▴ 110 • written 7.6 years ago by 8.9k
8
votes
9
replies
521
views
6 follow
Forum: Choose between AMD and INTEL Server CPU in 2021-2022
hardware server
updated 22 days ago by 24k • written 24 days ago by ▴ 20
187
votes
89
replies
12k
views
25 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
updated 26 days ago by ▴ 40 • written 16 months ago by 88k
2
votes
1
reply
138
views
Forum: Is there a way to look into funding proposals of published papers?
funding
updated 26 days ago by ★ 12k • written 26 days ago by ▴ 30
5
votes
6
replies
380
views
Forum: Suggestion of Biostatistics book.
RNA-SEQ R Biostatics
updated 4 weeks ago by ★ 1.3k • written 4 weeks ago by ▴ 30
7
votes
2
replies
179
views
Forum: Course on genome assembly and annotation
genomics
updated 4 weeks ago by 34k • written 5 weeks ago by ▴ 80
114
votes
31
replies
32k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 weeks ago by 34k • written 7.9 years ago by 11k
0
votes
1
reply
187
views
Forum: Opinions on SLAM-Seq for Differential Gene Analysis
DGE RNA-Seq htseq
updated 6 weeks ago by ★ 2.1k • written 6 weeks ago by ▴ 20
0
votes
1
reply
103
views
Forum: What can you detect with PE150bp shotgun sequencing with 100X depth
sequencing
updated 6 weeks ago by ★ 2.3k • written 6 weeks ago by • 0
1
vote
4
replies
201
views
Forum: Is WGS reliable for larges indels and duplication?
sequencing
updated 6 weeks ago by ★ 3.1k • written 6 weeks ago by • 0
0
votes
1
reply
782
views
Forum: Basic beginner bioinformatics for biochemistry for university first year students
books course
updated 7 weeks ago by 10k • written 7 weeks ago by • 0
9
votes
6
replies
687
views
Forum: When applying to a PhD program in Harvard or MIT, how many publications are recommended?
GradSchool Grad Harvard School Application
updated 6 weeks ago by ★ 12k • written 7 weeks ago by • 0
0
votes
3
replies
185
views
Forum: what for masters?
microbio masters
updated 7 weeks ago by ★ 1.3k • written 7 weeks ago by • 0
0
votes
2
replies
189
views
Forum: Study Materials
learning study materials
7 weeks ago by AHa • 0
6
votes
3
replies
207
views
Forum: Asking for content suggestions for updated bioinformatics book
python
updated 8 weeks ago by 52k • written 8 weeks ago by ▴ 680
9
votes
14
replies
853
views
6 follow
Forum: What are the pain points in genomic variant interpretation/annotation processes?
analysis variant
updated 6 days ago by ▴ 420 • written 8 weeks ago by ▴ 50
3
votes
2
replies
420
views
Forum: Given my background, what are my chances of being accepted into a PhD program at Harvard/MIT?
mit PhD gradschool admission harvard
updated 8 weeks ago by 34k • written 9 weeks ago by • 0
2
votes
0
replies
9.4k
views
Forum: Biostar Forum Posting Guidelines
Forum
updated 9 weeks ago by • 0 • written 9.3 years ago by 88k
0
votes
2
replies
249
views
Forum: Bioinformatics internship in Europe
europe internship
updated 9 weeks ago by • 0 • written 9 weeks ago by • 0
5
votes
4
replies
288
views
Forum: Detailed Textbooks for bioinformatics and computational biology
biomedical Computational genomics
updated 4 weeks ago by 34k • written 9 weeks ago by • 0
10
votes
7
replies
477
views
Forum: Conceptual - Do I need to justify myself if I generate more than three replicates?
statistics conceptual
9 weeks ago by c_u ▴ 450
2
votes
2
replies
189
views
Forum: reporting differentially expressed genes in a global RNA-seq study
DESeq2 RNA-seq expression heatmaps transcriptomics
11 weeks ago by thomas.welch ▴ 50
12
votes
8
replies
531
views
Forum: Starting a collective twitter account "Bioinformatician Underhood"
sci-comm
updated 4 weeks ago by 34k • written 11 weeks ago by ★ 2.3k
2
votes
2
replies
240
views
Forum: https://biostar.slack.com account
ngs
updated 11 weeks ago by 104k • written 11 weeks ago by ▴ 10
1.1k
votes
190
replies
37k
views
104 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 10 weeks ago by ▴ 830 • written 10.3 years ago by 20k
6
votes
12
replies
8.0k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university Forum
updated 12 weeks ago by 34k • written 4.8 years ago by ▴ 20
0
votes
2
replies
218
views
Forum: Phylogenomic study: suggestions and tips
evolution species genus phylogenomic phylogenetics
12 weeks ago by tiagobellintani ▴ 40
0
votes
0
replies
110
views
Forum: How is is is xxx?
sum-of-airs
10 weeks ago by aa • 0
0
votes
2
replies
280
views
Forum: How to write a function (Python 3.8) to find FASTA entry for DNA sequence
coding programming genetics python DNA
updated 12 weeks ago by ★ 11k • written 3 months ago by • 0
6
votes
9
replies
448
views
Forum: 2021: state and usuge of compressed file standards better than BAM and FASTQ
fastq compression bam
updated 3 months ago by 9.8k • written 3 months ago by ★ 4.9k
290
votes
55
replies
11k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 4 weeks ago by 34k • written 8.2 years ago by 8.6k
14
votes
14
replies
1.1k
views
7 follow
Forum: Bioinformatics startup market analysis
startup
written 3 months ago by ▴ 30
17
votes
21
replies
1.5k
views
8 follow
Forum: bioinformatics thesis
thesis
updated 3 months ago by 19k • written 3 months ago by ▴ 30
0
votes
0
replies
135
views
Forum: CADD Error in EXOMISER
exomiser cadd
3 months ago by shwetan • 0
3
votes
1
reply
197
views
Forum: Interested in benchmarks? Please take our survey!
benchmarking
3 months ago by Jeremy Leipzig 20k
2
votes
2
replies
261
views
Forum: What is your experience with the customer support of Oxford University Press?
oup
updated 3 months ago by 75k • written 3 months ago by ▴ 20
6
votes
5
replies
470
views
Forum: protein-protein interaction analysis
string database
3 months ago by au.rinki.bio ▴ 10
17
votes
9
replies
701
views
8 follow
Forum: Future of Microarrays
Microarrays
updated 3 months ago by 19k • written 3 months ago by ▴ 10
8
votes
8
replies
897
views
6 follow
Forum: R - A bioinformatic analysis programming language for NGS
NGS R
updated 4 weeks ago by 34k • written 3 months ago by ▴ 130
15
votes
7
replies
596
views
6 follow
Forum: What to put in my Github
Github
updated 3 months ago by ★ 2.6k • written 3 months ago by ▴ 20
11
votes
6
replies
620
views
Forum: Is it still interesting to publish the profile of the transcriptome?
Article RNA Transcriptome Suggestion RNAseq
3 months ago by tiagobellintani ▴ 40
2
votes
13
replies
1.1k
views
8 follow
Forum: Recommendation required for solution of computation requirements in Genomics field
DataAnalysis NGS Genomics
updated 3 months ago by 34k • written 3 months ago by ▴ 310
45
votes
23
replies
4.6k
views
6 follow
Forum: biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
news chat forum Forum
updated 3 months ago by 34k • written 3.4 years ago by 99k
19
votes
8
replies
795
views
9 follow
Forum: What are some major historic shifts in bioinformatic methodologies?
meta history
updated 3 months ago by 12k • written 4 months ago by 20k
4
votes
2
replies
399
views
Forum: Why did expression based subtypng of breast cancer gain much more acceptance than others
RNA-Seq subtyping expression
updated 3 months ago by 104k • written 3 months ago by ▴ 590
1,000 results • Page 1 of 20
Recent Votes
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A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
Answer: Which method is the best for using in "dba.count" in Diffbind R package
Answer: Which method is the best for using in "dba.count" in Diffbind R package
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Recent Replies
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`? …
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by Woa ★ 2.8k
haven't used Pymol for a while but I think you can write a script to automate the analysis rather than doing interactively
Comment: inquiry related to snpsift by Kevin Blighe 75k
Interesting, can you confirm the exact version 1.9 build, basically, please show the output of `bcftools --version`? Also, which operating …
Comment: How to filter VEP results of "missing values" by Yiming • 0
The VEP dose not seem to recognize " ". It returned "MSG: ERROR: Error parsing filter string - incomplete parentheses sets?"
Answer: Measuring pairwise distances between residues/atoms in structural alignment of p by jgreener ▴ 350
There are efficient and flexible distance calculators available in [BioStructures.jl][1] if you are okay with using Julia. [1]: http…
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Have you tried with a space between the `" "`?
Comment: inquiry related to snpsift by rheab1230 • 0
In my case its not mentioned. -a, --annotations <file> VCF file or tabix-indexed file with annotations: CHR\tPOS[\tVALUE]+ …
Comment: miRAnno—network-based functional microRNA annotation by Shicheng Guo ★ 8.7k
Interesting. It will be great to have a zoom meeting to share your tool.
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