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1,000 results • Page 1 of 20
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8
votes
8
replies
901
views
7 follow
Forum: A Computer Scientist who wants to start Bioinformatics
computer-science books resources ngs
updated 8 days ago by ▴ 10 • written 6 weeks ago by • 0
7
votes
3
replies
444
views
Forum: Find a research paper for reproducing the results
research paper
updated 23 days ago by 125k • written 24 days ago by ★ 2.5k
0
votes
1
reply
258
views
Forum: Gene ontology vs Gene set enrichment
set enrichment GSEA ontology Gene analysis gene
updated 8 weeks ago by ★ 1.7k • written 8 weeks ago by • 0
6
votes
12
replies
711
views
Forum: How to decide when to have local hardware vs cloud computing?
hardware computational-resources cloud
8 weeks ago by Lluís R. ★ 1.2k
15
votes
10
replies
1.3k
views
6 follow
Forum: BioStars and ChatGPT
ChatGPT Meta GPT
updated 8 weeks ago by 1.8k • written 8 weeks ago by ▴ 280
18
votes
10
replies
935
views
7 follow
Forum: Add artificial intelligence training related disclaimers to your profile
licensing AI
updated 8 weeks ago by 52k • written 9 weeks ago by 96k
0
votes
2
replies
1.3k
views
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
9 weeks ago by SushiRoll ▴ 100
7
votes
2
replies
301
views
Forum: Improvement of Wikipedia articles with bioinformatic subjects
Wikipedia Bioinformatics
12 days ago by Matthias Zepper 2.9k
5
votes
4
replies
454
views
Forum: Best BAM viewer in 2022
bam sam tool-recommendation
9 weeks ago by Cornelius ▴ 30
1.2k
votes
205
replies
47k
views
107 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 20 days ago by ▴ 240 • written 11.8 years ago by 21k
8
votes
4
replies
407
views
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
10 weeks ago by dlaehnemann ▴ 10
10
votes
13
replies
1.2k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 12 weeks ago by 5.7k • written 12 weeks ago by ▴ 10
0
votes
2
replies
468
views
Forum: Best Phd Programs in Usa ( Computational Biology)
computational-biology drug-design
updated 8 weeks ago by 37k • written 4 months ago by • 0
4
votes
5
replies
528
views
6 follow
Forum: Which Bioinformatics Master's degree is better?
bioifnormatics masters
updated 3 months ago by ▴ 100 • written 3 months ago by • 0
1
vote
1
reply
384
views
Forum: Package is not available (for R version XXX)？ Manually download and install R packages
installation package R
updated 4 weeks ago by 4.4k • written 3 months ago by ▴ 30
99
votes
36
replies
27k
views
32 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 13 days ago by 21k • written 9.2 years ago by ★ 3.6k
3
votes
6
replies
476
views
Forum: How to become a moderator and other ways of contributing to Biostars
biostars
4 months ago by iraun 5.7k
2
votes
3
replies
396
views
Forum: Experiences with different cloud computing resources / providers
cloud pipeline rna-seq alignment
updated 4 months ago by 21k • written 4 months ago by ▴ 10
19
votes
13
replies
1.1k
views
8 follow
Forum: Can bioinformatics Phds be completely or almost completely done remotely?
PhD
updated 4 months ago by 5.8k • written 4 months ago by ▴ 40
8
votes
13
replies
1.2k
views
8 follow
Forum: Commercial software for genomics / NGS / bioinformatics
NGS software genomics
updated 5 months ago by • 0 • written 5 months ago by ★ 1.1k
4
votes
4
replies
704
views
Forum: Bioinformatics analogies
Bioinformatics
updated 5 months ago by 96k • written 5 months ago by ▴ 40
2
votes
4
replies
604
views
Forum: Is low N in-vivo research a blind spot for RNA-seq?
power metascience statistics sample size
updated 5 months ago by 16k • written 5 months ago by ▴ 210
2
votes
4
replies
435
views
Forum: strand specific data
strand DNA RNA specific coding
5 months ago by upasana • 0
3
votes
0
replies
307
views
Forum: Let's build a list of Drug Databases including Tyrosine Kinase Inhibitors: Update 1
pharmacology RTK IC50 TKI database
5 months ago by Vincent Laufer ★ 2.5k
7
votes
14
replies
1.4k
views
7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 5 months ago by 1.8k • written 5 months ago by ▴ 80
4
votes
4
replies
819
views
Forum: Cloud Computing Services available?
resources Cloud-Computing
updated 8 weeks ago by 37k • written 7 months ago by ★ 2.2k
2
votes
7
replies
746
views
Forum: Build a Visual Analytic App for Rna-seq data [Ideas Accepted]
R plot rna-seq count
updated 6 months ago by 37k • written 6 months ago by ▴ 20
6
votes
3
replies
721
views
Forum: Best formats for storing large amounts of data for random access
file-formats databases
updated 6 months ago by 2.9k • written 6 months ago by 16k
0
votes
1
reply
294
views
Forum: Add an intercept column to a bed file
plink intercept bed
updated 6 months ago by 68k • written 6 months ago by • 0
4
votes
2
replies
1.3k
views
Forum: Best resource for getting a person with a Math/Comp Sci background the right amount of Biology knowledge
biology teaching
updated 7 weeks ago by 37k • written 6 months ago by ★ 2.5k
0
votes
0
replies
298
views
Forum: Normalization of ChIP-seq _ Spikein normalization + RPGC
ChIP-seq normalization RPGC Spikein Normalization
6 months ago by goddy93 • 0
3
votes
1
reply
347
views
Forum: Would an automated NGS analytics platform help research?
ngs data-analysis
updated 6 months ago by 37k • written 6 months ago by • 0
5
votes
2
replies
495
views
Forum: Skills for industry career in bioinformatics
industry
updated 7 months ago by 11k • written 7 months ago by ▴ 10
9
votes
6
replies
688
views
Forum: Programming languages in industry
programming language
updated 7 months ago by 9.5k • written 7 months ago by ▴ 30
2
votes
6
replies
677
views
Forum: Getting the best of RNA-Seq
RNA-Seq isoform gene expression
7 months ago by Antonio R. Franco ★ 5.0k
1
vote
0
replies
305
views
Forum: Not all Over Representation Analyses are the same!
clusterProfiler Analysis fisher hypergeometric ORA Pathway
7 months ago by Francesco ▴ 20
3
votes
2
replies
483
views
Forum: From protein-protein interaction networks to..
limitations tools knowledge computational workflow
7 months ago by BioInfoBeginner ▴ 40
0
votes
0
replies
358
views
Forum: Best practices for merging vcfs with different positions + different samples?
vcf bcftools genotypes
updated 7 weeks ago by 37k • written 7 months ago by ▴ 30
24
votes
6
replies
4.0k
views
6 follow
Forum: Awk in Bioinformatics
perl awk shell
updated 9 weeks ago by 37k • written 4.5 years ago by ★ 9.2k
7
votes
8
replies
959
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 9 weeks ago by 37k • written 8 months ago by 2.6k
0
votes
0
replies
335
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 7 weeks ago by 37k • written 8 months ago by ★ 1.4k
1
vote
3
replies
928
views
Forum: What counts as a valid biological replicate in single cell RNAseq?
statistics biological replicates scRNA-seq
updated 8 months ago by 3.4k • written 8 months ago by • 0
3
votes
3
replies
499
views
Forum: Looking for a PostDoc position in ML-heavy medical bioinformatics in Germany
Germany PostDoc
updated 8 months ago by 26k • written 8 months ago by ★ 2.9k
0
votes
0
replies
98
views
Forum: Can Bioinformatics be used in developing a product?
product company business
updated 7 weeks ago by 37k • written 8 months ago by ▴ 10
0
votes
2
replies
588
views
Forum: Bioinformatics algorithm tutorials in C++/C
protein gene genome
updated 8 months ago by 52k • written 8 months ago by ▴ 970
34
votes
11
replies
7.7k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 6 months ago by 37k • written 7.3 years ago by ★ 9.2k
6
votes
8
replies
1.2k
views
Forum: PC build for Nanopore data analysis
python PC pipeline nanopore-sequencing
8 months ago by stan.aanhane ▴ 30
7
votes
6
replies
819
views
Forum: How to learn bioinformatics?
learning
updated 7 weeks ago by 37k • written 8 months ago by ▴ 10
2
votes
3
replies
424
views
Forum: What is difference between Bioinformatics and Data Science?
Data-Science
updated 7 weeks ago by 37k • written 8 months ago by ▴ 30
2
votes
2
replies
569
views
Forum: Project ideas
project-ideas
updated 8 months ago by 52k • written 8 months ago by • 0
1,000 results • Page 1 of 20
Recent Votes
Answer: How to merge unique/non overlapping genes between 2 gene model GFF3 files?
Answer: How to merge unique/non overlapping genes between 2 gene model GFF3 files?
Comment: RNA Editing data from RNA-seq
Comment: RNA Editing data from RNA-seq
CircRNA extraction from bulk RNA seq datasets using CIRCexplorer2 with STAR alignment
Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalization?
A: Does Gene length corrected TMM [GeTMM] violate any assumptions of TMM normalizat
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Recent Replies
Answer: want the codes for cuffdiff , NIOSeq , bayseq to perform DEGs. by jv ▴ 780
- NOISeq <https://www.bioconductor.org/packages/release/bioc/vignettes/NOISeq/inst/doc/NOISeq.pdf> - Cuffdiff <http://cole-trapnell-lab.gi…
Comment: fastqc: Per base sequence content by jv ▴ 780
I think this is to be expected based a report I was able to find online <https://uu.diva-portal.org/smash/get/diva2:1608120/FULLTEXT01.pd…
Comment: fastqc: Per base sequence content by GenoMax 125k
Unless the kit directions tell you to remove remove the initial 10-15 bp you may as well leave them alone. Data should align would be my in…
Comment: RNA Editing data from RNA-seq by Genetics • 0
Thank you so much for your kind reply and for helping a bioinformatics beginner like me. Can I use **bowtie2** tools for allignment and th…
Comment: fastqc: Per base sequence content by khoojj • 0
Yes, I have proceed with analysis but I wonder if it is necessary to remove the first 10 or so bp from the reads. I have checked that NEBN…
Comment: Novogene somatic results with GATK mutect2 by GenoMax 125k
Did you look in the header of the provided VCF to see if any information has been encoded there (e.g. command line/options used).
Comment: RNASeq differential expression masked by pathways disregulation by Gama313 ▴ 110
That's exactly what I've done. However the dispersion is really high (primary samples) and the total number of samples seems really low to…
Comment: fastqc: Per base sequence content by GenoMax 125k
If the library was made using tagmentation then you will see that pattern. Flag warnings on FastQC do not immediately indicate that the da…
Answer: What type of database does gnomAD use? by Matthias Zepper 2.9k
I suppose there are multiple? Queries via Hail are very likely run against a [Matrix Table][1], but the web application likely uses a diffe…
Comment: What type of database does gnomAD use? by Pierre Lindenbaum 152k
> I have my own data, so I would like to try to create my own type of exome aggregation database, and the idea was to try to replicate gnom…
Answer: What type of database does gnomAD use? by Pierre Lindenbaum 152k
Google Cloud SDK https://github.com/broadinstitute/gnomad-browser/tree/main/deploy , but previous versions used mongodb https://github.com/…
Comment: Clustering and dynamic tree cutting by andres.firrincieli 3.1k
I don't think the `cutreeDynamic` function will work very well with a distance matrix calculated from pearson correlation values: `as.matri…
Comment: Clustering and dynamic tree cutting by harish • 0
These are differentially expressed genes, which are around 15K genes from a total of 30 K genes. Then I follow the clustering protocol as g…
Comment: ceres score in crispr screen by edus_bioinfo ▴ 20
I solved the issue with using bowtie. But now I am experiencing this issue; > Error in makeGRangesFromDataFrame(., seqinfo = genomeinfo, k…
Comment: Protein protein interactions by Peerzada • 0
Sir, How much time does this server take to give output for 1 pair of proteins as I have submitted several hours ago and it still shows ru…
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