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460 results • Page 4 of 10
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2
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1.0k
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Forum: Suffix Arrays: looking for an instructive algorithm of SA construction for teaching
suffix-arrays linear-time teaching algorithm
updated 10 months ago by 43k • written 4.0 years ago by 54k
0
votes
0
replies
745
views
Forum: make sense out of Whole Exome Sequencing on cancer cell lines
next-gen-sequencing Whole-Exome-Sequencing SNP
updated 10 months ago by 43k • written 4.0 years ago by ▴ 20
0
votes
2
replies
896
views
Forum: 1st-year grad student, plant biology lab, new to bioinformatics -- where to begin?
microarray plant-biology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
829
views
Forum: Annotation for WGBS
next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 10 months ago by 43k • written 4.0 years ago by ★ 5.1k
5
votes
5
replies
930
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 10 months ago by 43k • written 4.0 years ago by ★ 4.3k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 10 months ago by 43k • written 4.1 years ago by • 0
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.9 years ago by ▴ 330
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
7
votes
5
replies
950
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 10 months ago by 43k • written 4.1 years ago by ▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum: Who qualify as a world class bioinformatician as seen in job ads
world-class bioinformatician qualification
updated 10 months ago by 43k • written 4.1 years ago by • 0
29
votes
18
replies
2.7k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.1 years ago by ▴ 340
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.1 years ago by ★ 1.4k
6
votes
5
replies
7.7k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.1 years ago by 8.6k
1
vote
0
replies
1.1k
views
Forum: Phasing with Falcon
phase falcon Assembly phasing
11 months ago by Juke34 8.6k
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
56
votes
19
replies
4.1k
views
9 follow
Forum: How to apply for a job
resume cover-letter application CV
updated 11 months ago by 43k • written 6.8 years ago by 23k
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
11
votes
5
replies
6.5k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 11 months ago by 43k • written 4.2 years ago by ★ 9.4k
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.7k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.2 years ago by ▴ 70
2
votes
0
replies
1.1k
views
Forum: How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry chromosome-painting ADMIXTURE
updated 11 months ago by 43k • written 4.2 years ago by 8.2k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 11 months ago by 43k • written 4.2 years ago by 13k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
7
votes
2
replies
790
views
Forum: How to follow a particular post on Biostars?
meta
updated 11 months ago by 43k • written 4.5 years ago by ★ 4.0k
7
votes
4
replies
1.4k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
2
votes
2
replies
743
views
Forum: Learning RNASeq Analysis using my own DATA that needs to be analyzed
assembly gene RNA-Seq alignment
updated 11 months ago by 43k • written 4.3 years ago by • 0
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
votes
2
replies
940
views
Forum: How can bench biologists transition to be bioinformatics scientist?
transition career biology
updated 11 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
537
views
Forum: Transmart/i2b2 versus PhenoMeNal
transmart PhenoMeNal
updated 11 months ago by 43k • written 4.3 years ago by • 0
2
votes
6
replies
995
views
Forum: Error in posting to Biostars?
meta
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
1
vote
8
replies
5.3k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by 43k • written 4.3 years ago by • 0
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 43k • written 4.3 years ago by • 0
1
vote
0
replies
827
views
Forum: Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.9k
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
134
votes
65
replies
6.1k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 11 months ago by 43k • written 4.4 years ago by ▴ 880
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by 43k • written 4.4 years ago by ▴ 80
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.4 years ago by 8.2k
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by 43k • written 4.4 years ago by ▴ 10
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
6
votes
5
replies
955
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
12
votes
0
replies
1.9k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.3k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 months ago by 43k • written 4.5 years ago by ★ 5.1k
0
votes
0
replies
139
views
Forum: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
4
votes
0
replies
905
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 43k • written 4.5 years ago by 19k
460 results • Page 4 of 10
Recent Votes
Answer: Searching for gene in multiple genomes
Comment: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Answer: RNA velocity for smart-seq2 dataset
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
A: After read mapping, count exons or genes?
After read mapping, count exons or genes?
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Popular Question to drajangirija • 0
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Scholar to GenoMax 142k
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Recent Replies
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2 by GenoMax 142k
> I encountered a significant decrease in the percentage of merged reads. You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download by GenoMax 142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified. by GenoMax 142k
You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
Answer: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon. by lcordeiro ▴ 40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome by chrchang523 10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII ) You need to use --chr-set, not --allow-extra-chr, to specify…
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