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355 results • Page 4 of 8
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6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
6
votes
5
replies
1.1k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.9 years ago by ▴ 30
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.3 years ago by ★ 1.7k
6
votes
5
replies
962
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
6
votes
1
reply
2.3k
views
Forum: How to become employable in Bioinformatics, starting with degree and experience in CS/Software Engineering?
computer-scientist software-engineer
updated 12 months ago by 43k • written 5.8 years ago by • 0
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
6
votes
2
replies
693
views
Forum: how to start Bioinformatics?
basics
updated 5 months ago by ★ 27k • written 5 months ago by • 0
6
votes
5
replies
7.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 12 months ago by 43k • written 6.1 years ago by ▴ 10
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
5
votes
2
replies
383
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 20
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 12 months ago by 43k • written 5.7 years ago by ▴ 40
5
votes
4
replies
616
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 12 weeks ago by 142k • written 12 weeks ago by ▴ 10
5
votes
2
replies
1.3k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 11 months ago by 43k • written 5.1 years ago by 5.3k
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
5
votes
3
replies
878
views
Forum: price of MSI detection by NGS for 1 person
next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 20
5
votes
5
replies
948
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 18 months ago by ▴ 70
5
votes
3
replies
651
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 5 months ago by ★ 27k • written 5 months ago by ▴ 20
5
votes
3
replies
1.4k
views
Forum: Seeking ideas and guidance for an undergraduate project
modelling drug-discovery neural-network
updated 12 months ago by 43k • written 5.7 years ago by ▴ 10
5
votes
4
replies
1.0k
views
Forum: I always get the same Scholar Badge
meta
updated 12 months ago by 43k • written 6.1 years ago by 16k
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
5
votes
2
replies
417
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 8 weeks ago by 54k • written 8 weeks ago by • 0
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 12 months ago by 43k • written 5.4 years ago by ▴ 10
4
votes
2
replies
1.3k
views
Forum: Should I study MSc bioinformatics in Europe or US?
career genomics
updated 12 months ago by 43k • written 5.6 years ago by ▴ 10
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 43k • written 4.6 years ago by ▴ 110
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 43k • written 5.0 years ago by ★ 9.4k
4
votes
1
reply
733
views
Forum: Help with Bioinformatics Course
cancer
updated 11 months ago by 43k • written 3.7 years ago by • 0
4
votes
2
replies
409
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 10
4
votes
3
replies
1.2k
views
Forum: TACC vs SDSC vs HTCondor
PBS
updated 12 months ago by 43k • written 5.8 years ago by ★ 9.4k
4
votes
2
replies
541
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
10 weeks ago by Anatoly A. ▴ 10
4
votes
0
replies
910
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 43k • written 4.6 years ago by 19k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 11 months ago by 43k • written 4.3 years ago by 13k
4
votes
3
replies
826
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 43k • written 4 months ago by ▴ 10
4
votes
3
replies
926
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by 43k • written 4.7 years ago by ★ 1.9k
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 10
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
4
votes
6
replies
991
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
4
votes
3
replies
1.3k
views
Forum: Computation-Intesive Application in the field of bioinformatics
Computation-Intensive Application Software
updated 12 months ago by 43k • written 5.8 years ago by • 0
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
4
votes
0
replies
1.2k
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 11 months ago by 43k • written 4.8 years ago by ▴ 600
4
votes
0
replies
3.5k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 11 months ago by 43k • written 5.0 years ago by 11k
4
votes
7
replies
1.6k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 12 months ago by 43k • written 5.8 years ago by ★ 2.4k
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
355 results • Page 4 of 8
Recent Votes
Comment: What marks a De-Novo Genome assembly as FAILED?
A: How to extract specific chromosome from vcf file
A: How To Filter Mapped Reads With Samtools
C: Filtering A Sam File For Quality Scores
A: Filtering A Sam File For Quality Scores
Comment: Super ehancers
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK
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Recent Replies
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Hi, Thank you for a detailed responce. Let me add some more informations. Long-Read is ~75X coverage. Short-Read is ~100X coverage. **For…
Answer: Pruning Phylogenetic Trees and Bootstrap Values by Klaus S ▴ 160
The best is to prune the tree and also the bootstrap trees and afterwards re-assign the bootstrap values to the tree. The bootstrap values …
Comment: What is the amount of sequencing data produced annually? by Mohamed • 0
Here's a more neat version of the plot generated while writing my dissertation: ![enter image description here][1] [1]: https://raw.gi…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri by marco.barr ▴ 130
what a pity...
Comment: In one PCA plot, can I calculate the percentage of different factors that contri by diqixiaoyaoer ▴ 20
Yes, I can. But there are only two factors that affect my data PCA distribution: groups and donor. And the rest is regarded as residual. …
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award by colindaven 6.4k
Please delete this as it has nothing to do with the topic of this forum, bioinformatics. Thanks
Comment: Add stats to the plot by marco.barr ▴ 130
if don't work try binding the stats without group. stat_data4 <- data4.ts %>% ungroup() %>% t.test(data = ., value ~ Cond…
Comment: Nextflow docker: Error response from daemon by Pierre Lindenbaum 161k
you should ask : https://github.com/nf-core/sarek/issues/
Comment: Where to find old version of GATK best practice by Pierre Lindenbaum 161k
https://github.com/gatk-workflows ?
Comment: Create a new bed file with all pairwise combinations between two other bed files by Alex Reynolds 35k
Hi, if you can please post a separate question with inputs and expected output, reply here with a link to it, and I'll take a look.
Comment: Create a new bed file with all pairwise combinations between two other bed files by J ▴ 10
Hi again Alex, sorry to ask another question about this, but how can I tweak this code to keep **all** of the SNPs that pass the threshold …
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial) by ojaswinipandey • 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial) by Dave Carlson ★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds by marco.barr ▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
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