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460 results • Page 4 of 10
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0
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2
replies
1.0k
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Forum: Suffix Arrays: looking for an instructive algorithm of SA construction for teaching
suffix-arrays linear-time teaching algorithm
updated 10 months ago by 43k • written 4.0 years ago by 54k
0
votes
0
replies
743
views
Forum: make sense out of Whole Exome Sequencing on cancer cell lines
next-gen-sequencing Whole-Exome-Sequencing SNP
updated 10 months ago by 43k • written 4.0 years ago by ▴ 20
0
votes
2
replies
893
views
Forum: 1st-year grad student, plant biology lab, new to bioinformatics -- where to begin?
microarray plant-biology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
826
views
Forum: Annotation for WGBS
next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 10 months ago by 43k • written 4.0 years ago by ★ 5.1k
5
votes
5
replies
928
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 10 months ago by 43k • written 4.0 years ago by ★ 4.3k
2
votes
6
replies
1.2k
views
Forum: Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq database gene prot
updated 10 months ago by 43k • written 4.1 years ago by • 0
10
votes
7
replies
2.0k
views
Forum: Is trimming always better?
RNA-Seq QC trimmomatic trimming
updated 11 months ago by 43k • written 4.8 years ago by ▴ 330
2
votes
4
replies
1.3k
views
Forum: Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
7
votes
5
replies
945
views
Forum: scRNA rising in popularity, what comes next?
scRNA
updated 10 months ago by 43k • written 4.1 years ago by ▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum: Who qualify as a world class bioinformatician as seen in job ads
world-class bioinformatician qualification
updated 10 months ago by 43k • written 4.1 years ago by • 0
29
votes
18
replies
2.7k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 10 months ago by 43k • written 4.1 years ago by ▴ 340
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 10 months ago by 43k • written 4.1 years ago by ★ 1.4k
6
votes
5
replies
7.7k
views
Forum: Converting GFF to GTF
GTF GFF
updated 10 months ago by 43k • written 4.1 years ago by 8.5k
1
vote
0
replies
1.1k
views
Forum: Phasing with Falcon
phase falcon Assembly phasing
11 months ago by Juke34 8.5k
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 10 months ago by 43k • written 4.2 years ago by ▴ 280
56
votes
19
replies
4.1k
views
9 follow
Forum: How to apply for a job
resume cover-letter application CV
updated 11 months ago by 43k • written 6.8 years ago by 23k
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
11
votes
5
replies
6.4k
views
Forum: Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS HPC SDSC Torque
updated 11 months ago by 43k • written 5.7 years ago by ★ 9.4k
10
votes
6
replies
1.3k
views
6 follow
Forum: Pros and cons to do biomedical research in pharmaceutical company
industry career academia
updated 10 months ago by 43k • written 4.2 years ago by ★ 9.4k
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 10 months ago by 43k • written 4.2 years ago by ★ 1.7k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 10 months ago by 43k • written 4.2 years ago by ▴ 60
2
votes
0
replies
1.1k
views
Forum: How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry chromosome-painting ADMIXTURE
updated 10 months ago by 43k • written 4.2 years ago by 8.2k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 10 months ago by 43k • written 4.2 years ago by 13k
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 10 months ago by 43k • written 4.2 years ago by ▴ 50
7
votes
2
replies
786
views
Forum: How to follow a particular post on Biostars?
meta
updated 10 months ago by 43k • written 4.4 years ago by ★ 4.0k
7
votes
4
replies
1.4k
views
Forum: Studying for a Bioinformatics degree
sequence R next-gen gene RNA-Seq
updated 10 months ago by 43k • written 4.3 years ago by ▴ 20
2
votes
2
replies
741
views
Forum: Learning RNASeq Analysis using my own DATA that needs to be analyzed
assembly gene RNA-Seq alignment
updated 10 months ago by 43k • written 4.3 years ago by • 0
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 4.9 years ago by ★ 2.5k
2
votes
2
replies
937
views
Forum: How can bench biologists transition to be bioinformatics scientist?
transition career biology
updated 10 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
536
views
Forum: Transmart/i2b2 versus PhenoMeNal
transmart PhenoMeNal
updated 10 months ago by 43k • written 4.3 years ago by • 0
2
votes
6
replies
991
views
Forum: Error in posting to Biostars?
meta
updated 10 months ago by 43k • written 4.3 years ago by ▴ 50
1
vote
8
replies
5.3k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 10 months ago by 43k • written 4.3 years ago by • 0
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 10 months ago by 43k • written 4.3 years ago by • 0
1
vote
0
replies
826
views
Forum: Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.9k
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 10 months ago by 43k • written 4.4 years ago by • 0
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 10 months ago by 43k • written 4.4 years ago by ▴ 520
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 10 months ago by 43k • written 4.4 years ago by ▴ 630
134
votes
65
replies
6.1k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate
updated 10 months ago by 43k • written 4.4 years ago by ▴ 880
7
votes
6
replies
1.8k
views
Forum: Bioinformaticians - Am I on the Right Track?
Career
updated 10 months ago by 43k • written 4.4 years ago by ▴ 80
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 10 months ago by 43k • written 4.4 years ago by 8.2k
8
votes
7
replies
1.4k
views
Forum: Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 10 months ago by 43k • written 4.4 years ago by ▴ 10
11
votes
7
replies
6.6k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 11 months ago by 43k • written 4.7 years ago by ▴ 310
6
votes
5
replies
951
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 10 months ago by 43k • written 4.4 years ago by ▴ 110
12
votes
0
replies
1.9k
views
Forum: Free Bioinformatics Courses(Curriculum)
ossu course Curriculum
updated 10 months ago by 43k • written 4.5 years ago by ★ 1.3k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 10 months ago by 43k • written 4.5 years ago by ★ 5.1k
0
votes
0
replies
137
views
Forum: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 10 months ago by 43k • written 4.5 years ago by ▴ 10
4
votes
0
replies
902
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 10 months ago by 43k • written 4.5 years ago by 19k
460 results • Page 4 of 10
Recent Votes
Comment: PDB related issue
Comment: PDB related issue
Comment: NGS forensics: how to know if data is fabricated
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
Comment: How many reads for WGS Sequencing?
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Popular Question to Zhenyu Zhang ★ 1.2k
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Recent Replies
Comment: Figures are disappeared from html report of SnpEff by analyst ▴ 30
I reinstalled nodejs: > sudo apt-get install nodejs Its already up to date with version v10.19.0
Answer: NGS forensics: how to know if data is fabricated by Prash ▴ 270
Mensur, if I were you, I'd probably contact the CA directly and check with him whether they have reproduced the works recently. There coul…
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 550
Working on it - it's actually a bit difficult. Low coverage of ribosomal proteins. Low coverage of housekeeping genes ...I'm trying to find…
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 550
I'm a bit against pubpeer - have you ever posted there? My gripe with them is that the posts are heavily moderated and EDITED to the point…
Comment: NGS forensics: how to know if data is fabricated by Philipp Bayer 8.4k
Thanks Mensur! I'd add that in 9 out of 10 cases, you won't receive a reply to a request for raw data. That's just how scientists are, does…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
I had downloaded the two files in a similar manner actually.
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
ok, i'll try to use fastp. I have only used trimmomatic and cutadapt till now and they dont identify on its own. Except the graph in fastqc…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
got it! even if i'm doing the assembly for paired end with both the files do i have set the threshold to 1000bp ?
Comment: NGS forensics: how to know if data is fabricated by Philipp Bayer 8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
Answer: Differential Expression using Isoseq-supplemented reference transcriptome by Gordon Smyth ★ 7.0k
> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
Comment: NGS forensics: how to know if data is fabricated by benformatics 3.9k
Can you post an IGV screenshot of what this looks like?
Comment: NGS forensics: how to know if data is fabricated by benformatics 3.9k
Yeah some of the Illumina machines pre-trim adapters (not sure if this is still the standard). I've also definitely also seen quality-trimm…
Comment: PDB related issue by noodle ▴ 550
You can typically find much more useful info in the cif file, for example what you've found is called '_atom_site.pdbx_PDB_ins_code ' and d…
Comment: PDB related issue by Mensur Dlakic ★ 27k
The best way to find out is to read the original paper. My guess is that the residue has been crystallized in alternative conformations, wh…
Answer: NGS forensics: how to know if data is fabricated by Mensur Dlakic ★ 27k
I share the opinion by @philippbayer I have seen enough questionable things in life and in science to keep me permanently jaded, but there…
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