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411 results • Page
3 of 9
Sort: Votes
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Views
Votes
Replies
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 9 months ago by
joey
▴ 10
11
votes
6
replies
1.6k
views
Forum:
Posting a preprint paper on biostars.com
preprint
updated 11 months ago by
Ram
43k • written 5.6 years ago by
statfa
▴ 760
11
votes
8
replies
1.7k
views
Forum:
Bioinformatics cores pricing model
pricing-models
core
Bioinformatics-services
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Bioinfo_2006
▴ 160
11
votes
5
replies
6.5k
views
Forum:
Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS
HPC
SDSC
Torque
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
11
votes
5
replies
1.5k
views
Forum:
What bioinformatic training?
training
RNA-Seq
illumina
updated 11 months ago by
Ram
43k • written 5.0 years ago by
Peter Horbatz
▴ 150
11
votes
9
replies
2.3k
views
Forum:
Survey: help define Gencode and NCBI primary transcripts
refseq
ensembl
gencode
ncbi
transcript
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Emily
23k
11
votes
9
replies
2.5k
views
7 follow
Forum:
Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error
pca
scRNA-seq
updated 12 months ago by
Ram
43k • written 4.4 years ago by
ATpoint
82k
11
votes
5
replies
4.8k
views
Forum:
Bioinformatics Workstation Suggestions
RNA-Seq
next-gen
workstation
updated 11 months ago by
Ram
43k • written 4.9 years ago by
akh22
▴ 110
10
votes
8
replies
3.1k
views
6 follow
Forum:
Cancer research for computer science student
cancer
research
computer-science
updated 7 months ago by
SANDHYA
• 0 • written 6.5 years ago by
mhasa006
▴ 70
10
votes
6
replies
2.2k
views
Forum:
How to acknowledge in the paper a reference genome that hasn't been published yet?
reference
paper
updated 11 months ago by
Ram
43k • written 5.7 years ago by
ciemanek
▴ 140
10
votes
10
replies
1.7k
views
Forum:
Doctor looking fertility for a collaborator for text mining on pubmed
text-mining
fertility
pubmed
updated 12 months ago by
Ram
43k • written 6.5 years ago by
jeromebouaziz
• 0
10
votes
7
replies
2.3k
views
Forum:
How to learn bioinformatics?
learning
updated 3 months ago by
Samuel Lampa
★ 1.3k • written 24 months ago by
sakichwan
▴ 20
10
votes
6
replies
1.3k
views
6 follow
Forum:
Pros and cons to do biomedical research in pharmaceutical company
industry
career
academia
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Shicheng Guo
★ 9.4k
10
votes
11
replies
4.2k
views
7 follow
Forum:
What made you interested in Bioinformatics?
career
updated 12 months ago by
Ram
43k • written 6.5 years ago by
Hussain Ather
▴ 990
10
votes
15
replies
2.2k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
10
votes
4
replies
5.8k
views
Forum:
Bioinformatics: Which language should I learn
programming
updated 11 months ago by
Ram
43k • written 5.0 years ago by
MEHAR ALI RAZA
• 0
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Mozart
▴ 330
9
votes
10
replies
17k
views
8 follow
Forum:
Open Source Bioinformatics projects for beginners
Open-Source
Beginners
updated 3 months ago by
Saransh
• 0 • written 6.3 years ago by
Eugenia84
▴ 40
9
votes
10
replies
1.3k
views
6 follow
Forum:
What's more clear, loops or functions?
R
updated 11 months ago by
Ram
43k • written 5.6 years ago by
DriesB
▴ 110
9
votes
1
reply
7.3k
views
Forum:
Master in statistics or bioinformatics
masters
career
statistics
updated 11 months ago by
Ram
43k • written 10.0 years ago by
indeci
▴ 50
9
votes
8
replies
5.2k
views
Forum:
R or python, which one do you prefer in analysing scRNAseq datasets?
R
RNA-Seq
python
updated 11 months ago by
Ram
43k • written 6.0 years ago by
wt215
• 0
9
votes
10
replies
1.7k
views
Forum:
Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences
data-analysis
updated 11 months ago by
Ram
43k • written 6.1 years ago by
lessismore
★ 1.3k
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 11 months ago by
Ram
43k • written 3.7 years ago by
Sashi G
▴ 10
9
votes
11
replies
3.3k
views
7 follow
Forum:
Fields with biggest demand for bioinformatics?
career
updated 11 months ago by
Ram
43k • written 5.3 years ago by
BioinformaticsLad
▴ 200
9
votes
6
replies
1.4k
views
Forum:
New Aligner Tool - Would you be interested in this ?
ChIP-Seq
alignment
Assembly
next-gen
rna-seq
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Andrew_MacGregor
▴ 30
9
votes
6
replies
2.0k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 8 months ago by
ATpoint
82k • written 18 months ago by
dlaehnemann
▴ 30
9
votes
14
replies
2.4k
views
Forum:
MS Bioinformatics Project
assembly
sequencing
alignment
R
SNP
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Moneeb Bajwa
▴ 10
9
votes
3
replies
3.2k
views
Forum:
Why doesn't Swift have an active bioinformatics community project like rust-bio, Biogo and BioJulia?
Swift
updated 12 months ago by
Ram
43k • written 6.4 years ago by
stevin
• 0
8
votes
6
replies
2.9k
views
Forum:
Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by
Asaf
10k
8
votes
4
replies
2.7k
views
Forum:
SNP calling in 2018
variant
gatk
SNP
updated 12 months ago by
Ram
43k • written 6.2 years ago by
Picasa
▴ 640
8
votes
7
replies
860
views
6 follow
Forum:
Tower Server configuration for NGS data analysis
NGS
updated 12 weeks ago by
emmanouil.a
▴ 120 • written 3 months ago by
harasharan
• 0
8
votes
1
reply
7.3k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
3 months ago by
rohitsatyam102
▴ 860
8
votes
6
replies
2.5k
views
Forum:
How do you organize sequence data (FASTQs)?
RNA-Seq
sequencing
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Daniel E Cook
▴ 280
8
votes
11
replies
1.8k
views
Forum:
What makes a good bionformatics prediction service from the point of user experience?
server
prediction-service
updated 12 months ago by
Ram
43k • written 6.6 years ago by
aquaq
▴ 40
8
votes
6
replies
4.8k
views
6 follow
Forum:
Are OTUs an accurate measure of abundance?
next-gen
16S-rRNA
updated 12 months ago by
Ram
43k • written 6.3 years ago by
nidhi.vijayan13
▴ 30
8
votes
7
replies
6.5k
views
6 follow
Forum:
Bioinformatic or bioinformatics?
spelling
updated 12 months ago by
Ram
43k • written 6.6 years ago by
jon.brate
▴ 310
8
votes
9
replies
3.7k
views
8 follow
Forum:
How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by
Ram
43k • written 5.5 years ago by
Chen Sun
★ 1.1k
8
votes
4
replies
1.8k
views
Forum:
Unsolved Topics in Bioinformatics
bioinformatics
updated 11 months ago by
Ram
43k • written 6.1 years ago by
BioICoder
▴ 40
8
votes
7
replies
1.4k
views
Forum:
Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.5 years ago by
sha_6p
▴ 10
7
votes
10
replies
1.8k
views
Forum:
Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by
Ram
43k • written 5.7 years ago by
SeYu
• 0
7
votes
7
replies
5.0k
views
Forum:
Filtering out chromosomes from reference genome
RNA-Seq
Alignment
updated 11 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
7
votes
9
replies
1.1k
views
Forum:
DEG analysis when not replicates are available
NOISeq
RNA-Seq
edgeR
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Antonio R. Franco
★ 5.1k
7
votes
4
replies
1.2k
views
Forum:
Specific question on torturing the data until it confesses
ipa
gene-set-enrichment
statistics
updated 12 months ago by
Ram
43k • written 3.4 years ago by
Aspire
▴ 330
7
votes
6
replies
768
views
Forum:
where to work as a bioinformatician (NGS/IA)
employment
omics
ia
ngs
updated 4 months ago by
Ram
43k • written 4 months ago by
Petur
▴ 20
7
votes
4
replies
1.5k
views
Forum:
Studying for a Bioinformatics degree
sequence
R
next-gen
gene
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
O'kin-1
▴ 20
7
votes
9
replies
1.6k
views
Forum:
10 Most important topic in Human evolutionary genomics
evolutionary-genomics
evolutionary-medicine
updated 11 months ago by
Ram
43k • written 5.1 years ago by
aloke205
▴ 40
7
votes
6
replies
3.1k
views
Forum:
transition to bioinformatics
career
wet-lab
updated 11 months ago by
Ram
43k • written 5.9 years ago by
ejms
• 0
7
votes
3
replies
1.7k
views
Forum:
[Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
NGS
RNA-Seq
ChIP-Seq
updated 12 months ago by
Ram
43k • written 6.7 years ago by
chiefcat
▴ 180
7
votes
4
replies
2.2k
views
Forum:
How hard it is to get a bioinformatics degree in one country but find a career in another country?
career
Masters
updated 11 months ago by
Ram
43k • written 5.9 years ago by
dominic.dong
▴ 10
7
votes
13
replies
1.4k
views
Forum:
How do you validate and verify your pipeline's software updates?
Validation
Verification
Quality-Assurance
updated 6 months ago by
Ram
43k • written 7 months ago by
kieran
▴ 10
411 results • Page
3 of 9
Recent Votes
Problems with breakdancer (sv caller) output.
Problems with breakdancer (sv caller) output.
Comment: Add stats to boxplot in R
Answer: Genotyping sites with N in reference genome
A: how to combine RNA seq data from 4 lanes
Answer: Cannot install bwa-mem2 via conda
Answer: Sub-sampling a BAM to a fixed number of reads
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Recent Replies
Comment: Add stats to boxplot in R
by
Ghada
• 0
Thanks. Thats work
Comment: Genotyping sites with N in reference genome
by
Zhenyu Zhang
★ 1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R
by
marco.barr
▴ 110
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome
by
shpak.max
▴ 50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
see https://www.biostars.org/p/9496674/ <!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴ 70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types? I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
by
asalimih
▴ 60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R
by
Lélé
▴ 10
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this: …
Answer: Sequencing Depth (Read Depth) Calculations
by
GenoMax
142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
Comment: Sequencing Depth (Read Depth) Calculations
by
Pierre Lindenbaum
161k
it looks looks ok to me. <!-- This cmd works and gives me 40.5235, I was wondering whether this cmd is right or wrong, and does anyone hav…
Comment: Add stats to boxplot in R
by
Ghada
• 0
Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
Comment: Using ggplotly in R
by
jared.andrews07
★ 16k
Again, this is not particularly difficult to do with [plotly itself](https://plotly.com/r/line-and-scatter/#adding-color-and-size-mapping) …
Comment: Duplicated reads (IDs) from nanopore sequencing
by
GenoMax
142k
If you only have supplementary alignments then they may be caused by reasons mentioned here --> https://www.biostars.org/p/308853/ I did no…
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