updated 18 days ago by
psb7
▴
20
•
written 5.7 years ago by
Kevin Blighe
87k
98
votes
106
replies
46k
views
26 follow
76
votes
72
replies
19k
views
19 follow
2 days ago by
Kevin Blighe
87k
164
votes
70
replies
61k
views
34 follow
103
votes
42
replies
31k
views
34 follow
updated 18 days ago by
Jeremy Leipzig
22k
•
written 10.5 years ago by
14134125465346445
★
3.6k
10
votes
37
replies
12k
views
21 follow
updated 17 days ago by
aziz.hammou
•
0
•
written 8.8 years ago by
kevluv93
▴
170
10
votes
36
replies
5.8k
views
updated 10 days ago by
Ram
43k
•
written 5.7 years ago by
Kristin Muench
▴
620
81
votes
27
replies
20k
views
12 follow
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 9 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
23
votes
23
replies
9.8k
views
6 follow
updated 9 days ago by
Ram
43k
•
written 5.3 years ago by
iraia.munoa
▴
130
11
votes
22
replies
4.2k
views
57
votes
22
replies
28k
views
7 follow
updated 21 days ago by
Ram
43k
•
written 4.5 years ago by
Arindam Ghosh
▴
510
13
votes
22
replies
11k
views
updated 10 days ago by
Ram
43k
•
written 6.8 years ago by
lessismore
★
1.3k
5
votes
20
replies
4.2k
views
updated 17 days ago by
Ram
43k
•
written 6.2 years ago by
pablo61991
▴
90
18
votes
20
replies
4.4k
views
6 follow
updated 17 days ago by
Ram
43k
•
written 7.5 years ago by
morteza.mahmoudisaber
▴
80
7
votes
20
replies
6.4k
views
7 follow
updated 16 days ago by
e.r.zakiev
▴
200
•
written 4.3 years ago by
kevin.stachelek
▴
80
22
votes
18
replies
6.1k
views
2
votes
18
replies
1.6k
views
6
votes
17
replies
6.6k
views
updated 10 days ago by
Ram
43k
•
written 9.6 years ago by
james.lloyd
▴
100
12
votes
17
replies
6.1k
views
9 follow
3
votes
16
replies
2.7k
views
updated 17 days ago by
Ram
43k
•
written 7.9 years ago by
1234anjalianjali1234
▴
50
17
votes
16
replies
14k
views
10 follow
0
votes
16
replies
1.1k
views
8
votes
16
replies
830
views
34
votes
16
replies
20k
views
9 follow
updated 8 days ago by
Hagen
▴
10
•
written 10.2 years ago by
filipzembol
▴
180
22
votes
14
replies
28k
views
7 follow
5
votes
14
replies
980
views
12
votes
13
replies
4.4k
views
4
votes
13
replies
869
views
updated 10 days ago by
BioinfGuru
★
1.7k
•
written 16 days ago by
matteo.levorato
•
0
5
votes
13
replies
1.2k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
updated 7 days ago by
ATpoint
82k
•
written 8 days ago by
BioinfGuru
★
1.7k
0
votes
13
replies
3.5k
views
6 follow
updated 3 days ago by
drstalinantony28
•
0
•
written 2.2 years ago by
ymj
▴
10
5
votes
13
replies
9.2k
views
8 follow
updated 16 days ago by
Mike Smith
★
2.0k
•
written 2.8 years ago by
lincaijin1994
▴
40
13
votes
13
replies
18k
views
9 follow
updated 19 days ago by
ummeswaiba
•
0
•
written 10.3 years ago by
biostar
▴
170
6
votes
13
replies
646
views
9
votes
12
replies
4.1k
views
8
votes
12
replies
3.5k
views
30
votes
12
replies
3.8k
views
3
votes
12
replies
516
views
11
votes
12
replies
965
views
8
votes
12
replies
1.9k
views
9 days ago by
Ram
43k
54
votes
12
replies
28k
views
12 follow
updated 8 days ago by
kjngo
•
0
•
written 12.0 years ago by
Gabriel R.
★
2.9k
5
votes
12
replies
1.6k
views
19
votes
11
replies
14k
views
10 follow
3
votes
11
replies
6.0k
views
updated 10 days ago by
Ram
43k
•
written 6.4 years ago by
shania90.lk
▴
30
23
votes
11
replies
4.9k
views
7 follow
updated 11 days ago by
Ram
43k
•
written 5.0 years ago by
WouterDeCoster
47k
1
vote
11
replies
571
views
0
votes
11
replies
494
views
6
votes
11
replies
3.3k
views
updated 10 days ago by
Ram
43k
•
written 5.2 years ago by
Davide Chicco
▴
120
4
votes
11
replies
563
views
11
votes
11
replies
1.2k
views
7 follow
updated 18 days ago by
GenoMax
141k
•
written 20 days ago by
alejandro.mejiam1
▴
10
25
votes
11
replies
3.7k
views
6 follow
Forum:
Site Use Guidelines
updated 3 days ago by
Ram
43k
•
written 14.6 years ago by
Istvan Albert
100k
Recent Votes
Recent Locations •
All
United States, just now
India, just now
Portugal, 2 minutes ago
Machhagan, 4 minutes ago
The Netherlands, 4 minutes ago
United States, 5 minutes ago
Poland, 11 minutes ago
Recent Awards •
All
Popular Question to
rohitsatyam102
▴
850
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Comment: different FeatureCounts output for the same data
by
Istvan Albert
100k
just to clarify, it is not that the program algorithm works differently but the meaning of the flags changed;
before -p was sufficient to…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Thanks Ram. Using merge maxed out my ram on a large list, but your suggestion directed me to purrr::reduce which works great.
Comment: ScRNA data question
by
starswillfade
▴
10
features <- SelectIntegrationFeatures(object.list = merged_dat)
data.anchors <- FindIntegrationAnchors(object.list = merged_dat,
…
Comment: gvcf joint calling
by
zihanss
•
0
Thank you for your help! I really appreciate it!
And you know, the merged WES gVCF files still have "NA" loci. For such cases, I am quite …
Comment: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Guille
•
0
Thank you for your answer!
The MDS plot seems to group most treatment groups close-by, so I'm starting to suspect the effect of treatment …
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴
30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Traffic: 1796 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6