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121,832 results • Page
608 of 2437
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
1.1k
views
Job:
Program Manager - Computational Biology
Computational
Biosciences
Biology
4.1 years ago by
BerkeleyLab
▴ 70
1
vote
2
replies
1.1k
views
bcftools mpileup giving more wildtypes <*> than expected
bcftools
DNA-seq
mpileup
4.1 years ago by
gt
▴ 30
0
votes
1
reply
748
views
Annotating CNV
gnomad
Annotation
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
akshitiz09
▴ 20
0
votes
0
replies
722
views
freebayes only picking up variants in a single contig
variant-calling
DNA-seq
freebayes
4.1 years ago by
gt
▴ 30
2
votes
6
replies
2.2k
views
rMATS BAM file MemoryError Issue
rMATS
processing
BAM
4.1 years ago by
saipra003
▴ 20
0
votes
8
replies
2.8k
views
Error in DSSP Module of Biopython
Python
Biopython
4.1 years ago by
anasjamshed
▴ 140
0
votes
1
reply
691
views
Expression analysis of data obtained from Broad GDAC Firehouse (https://gdac.broadinstitute.org/)
gdac
tcga
updated 4.1 years ago by
Ram
45k • written 4.2 years ago by
jyotsnap
• 0
2
votes
0
replies
744
views
Herald:
The Biostar Herald for Tuesday, July 20, 2021
herald
4.1 years ago by
Biostar
3.6k
0
votes
3
replies
2.0k
views
error related to annovar software
rsid
annovar
VCF
SNP
4.1 years ago by
rheab1230
▴ 150
1
vote
2
replies
1.2k
views
retrieving entire genomic sequence contents of a database
genomes
mining
database
ftp
ensembl
updated 4.1 years ago by
Ben Moore
★ 2.4k • written 4.1 years ago by
saundythe8th
• 0
0
votes
0
replies
966
views
Does the normalization method affect scRNAseq data integration?
scran
scuttle
scRNAseq
integration
normalization
data
4.1 years ago by
joker33
▴ 150
3
votes
8
replies
2.4k
views
Spatial transcriptomics data
scalefactor
spatial
4.1 years ago by
lsudupe
▴ 20
9
votes
3
replies
1.5k
views
Forum:
How to manage Biostar email subscriptions?
biostars
updated 4.1 years ago by
natay
20 • written 4.1 years ago by
WUSCHEL
▴ 860
2
votes
3
replies
1.2k
views
Exons Distribution from single cell data.
exons
introns
scrna
updated 4.1 years ago by
benformatics
4.2k • written 4.1 years ago by
Cheng Wei
• 0
103
votes
39
replies
190k
views
19 follow
Extract Reads From A Bam File That Fall Within A Given Region
bam
updated 2.4 years ago by
Dan
▴ 180 • written 13.2 years ago by
abi
▴ 410
1
vote
2
replies
1.3k
views
Start with MrBayes
MrBayes
updated 4.1 years ago by
Sej Modha
5.3k • written 4.1 years ago by
Maria
• 0
0
votes
0
replies
746
views
Job:
Postdoc Molecular Mechanisms of Cell State Transitions - Information Management and Information Infrastructure
germany
bioimaging
postdoc
updated 2.5 years ago by
Ram
45k • written 4.1 years ago by
christina.klaere
• 0
0
votes
0
replies
773
views
Tool:
Manticore: a software to extract the intermixed regions of subgenomes in hybrid species
mapping
hybrid
subgenome
genomics
sequencing
4.1 years ago by
Matteo Schiavinato
★ 3.7k
0
votes
0
replies
552
views
E.coli Promoter sequence
Sequence
Promoter
E.coli
RegulonDB
4.1 years ago by
fufor_b
• 0
3
votes
1
reply
1.9k
views
Tool:
all2vcf: a tool to convert non-standard variant outputs (mummer. bcftools isec) to VCF
mummer
isec
variant
bcftools
VCF
updated 2.9 years ago by
ayeshatariq78
• 0 • written 4.1 years ago by
Matteo Schiavinato
★ 3.7k
0
votes
2
replies
958
views
Does PLINK2 have the function of batch processing ?
batch
processing
plink2
updated 4.1 years ago by
Dave Carlson
★ 2.2k • written 4.1 years ago by
Julia_W
• 0
9
votes
10
replies
7.9k
views
8 follow
Which method is the best for using in "dba.count" in Diffbind R package
ChIP-Seq
diffbind
updated 21 months ago by
Rory Stark
★ 2.1k • written 5.9 years ago by
m.sadman.sakib
▴ 120
0
votes
0
replies
829
views
GFF/GTF: how to translate CDS genomic coordinates to protein coordinates
GTF
GFF3
updated 4.1 years ago by
Juke34
9.3k • written 4.1 years ago by
abascalfederico
★ 1.2k
3
votes
5
replies
2.5k
views
Does Last aligner only outputs the mapped reads to a bam file ?
assembly
alignment
sequencing
next-gen
genome
updated 4.1 years ago by
changhaiduan
• 0 • written 7.1 years ago by
pinn
▴ 210
0
votes
0
replies
1.5k
views
Tool:
Handy online tool for genomic analysis and data visualization - Part I
NGS
Sequencing
updated 2.5 years ago by
Ram
45k • written 4.1 years ago by
Novogene
▴ 510
0
votes
1
reply
1.4k
views
determination of alternate splicing events from assembled transcripts
rna-seq
updated 4.1 years ago by
ponganta
▴ 590 • written 7.2 years ago by
blooming.daisy333
▴ 110
1
vote
1
reply
1.0k
views
GATK VQSR for human WGS
WGS
alignment
genome
updated 4.1 years ago by
samuelandjw
▴ 270 • written 4.1 years ago by
quentin54520
▴ 120
0
votes
0
replies
1.2k
views
GATK MarkDuplicates Metrix issues
Markduplicates
Picard
RNASeq
4.1 years ago by
aka
▴ 10
1
vote
2
replies
4.1k
views
bcftools stats output file specification?
bcftools
stats
4.1 years ago by
Jordi
▴ 60
0
votes
1
reply
893
views
Whole genome sequencing.
NGS
updated 4.1 years ago by
MSRS
▴ 590 • written 4.1 years ago by
Puneeth
• 0
3
votes
8
replies
2.0k
views
Can someone suggest any python script or any script so that I can make modification in my excel sheets or text file ?
code
python
updated 4.1 years ago by
ATpoint
89k • written 4.1 years ago by
sahilbioinf0
• 0
0
votes
0
replies
841
views
How do I create a heat map (ASVs) with corresponding taxonomic rank with ggplot2?
microbiome
heatmap
4.1 years ago by
neokao
• 0
1
vote
5
replies
5.5k
views
Error in `$<-.data.frame`(`*tmp*`, "feature", value = XXX) replacement has YYY rows, data has 0
R
updated 4.1 years ago by
Ram
45k • written 4.1 years ago by
cthangav
▴ 110
1
vote
3
replies
1.4k
views
Featurecount mapping is less
Featurecount
STAR
RNAseq
4.1 years ago by
vinishavvenugopal
▴ 30
0
votes
0
replies
910
views
Gini Index Box plot
RNA-Seq
TCR
R
Seurat
10x
4.1 years ago by
roberts
▴ 60
0
votes
0
replies
698
views
linking BRENDA ligands to InChlKey
InChlKey
CHEBI
enzyme
BRENDA
4.1 years ago by
bioguy
▴ 50
0
votes
2
replies
1.7k
views
Gblocks file not opened error
Conserved
MSA
regions
updated 4.1 years ago by
brian.fristensky
▴ 460 • written 4.1 years ago by
sa.youssef
• 0
1
vote
4
replies
2.0k
views
Reading and normalizing raw data on R
GEO
normalization
R
4.1 years ago by
Fate
• 0
1
vote
2
replies
991
views
Gene annotations of HLA-A genes
genes
A11
HLA-A2
annotation
genome
A3
gene
4.1 years ago by
zhang.wen81
• 0
0
votes
0
replies
717
views
HLA typing of SCC152 cell lines
copy
cell
number
lines
SCC152
RNA-seq
E7
typing
HLA
4.1 years ago by
zhang.wen81
• 0
0
votes
0
replies
1.1k
views
HLA haplotypes VCF
HLA
Haplotype
VCF
4.1 years ago by
rubic
▴ 270
2
votes
3
replies
1.1k
views
Are there risks to use a GRCh38 gtf and a hg19 fa in alignment?
RNASeq
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
ddzhangzz
▴ 90
2
votes
2
replies
2.7k
views
BWA error: [bwa_idx_build] fail to open file 'ref.fa' : No such file or directory
BWA
updated 4.1 years ago by
swbarnes2
15k • written 4.1 years ago by
David
• 0
0
votes
0
replies
1.7k
views
Job:
Looking for Intern, Junior positions in bioinformatics/computational biology
oncology
biostatistics
R
updated 4.1 years ago by
cpad0112
21k • written 4.1 years ago by
Sergio
• 0
0
votes
1
reply
736
views
inexpensive method to detect SNPs in entire bacterial genomes
bacteria
SNPs
RFLP
genome
updated 4.1 years ago by
Mensur Dlakic
★ 29k • written 4.1 years ago by
sapuizait
▴ 10
25
votes
5
replies
9.5k
views
Conda, bioconda, anaconda, are they different?
Conda
anaconda
bioconductor
bioconda
4.1 years ago by
hamid.gaikani
▴ 80
1
vote
2
replies
1.1k
views
Precomputed MSAs for human proteome
proteome
msa
4.1 years ago by
david.f.stein
▴ 10
1
vote
3
replies
2.7k
views
How to perform logistic regression (with option “firth-fallback”) in Plink2
plink
updated 4.1 years ago by
chrchang523
11k • written 4.1 years ago by
MAPK2
▴ 50
2
votes
1
reply
1.5k
views
Understanding the number of intersection in bedtools jaccard
bedtools
comparison
vcf
snps
updated 4.1 years ago by
i.sudbery
22k • written 4.1 years ago by
QLFblaireau
▴ 30
3
votes
3
replies
2.4k
views
homebrew Vs bioconda
homebrew
bioconductor
updated 4.1 years ago by
Juke34
9.3k • written 4.1 years ago by
hamid.gaikani
▴ 80
121,832 results • Page
608 of 2437
Recent Votes
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
Answer: Split chromosome into smaller fragments to save memory when build xg and gcsa in
C: DiffBind error when calling dba.count
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Answer: CBioPortal: What does Mutation type: Targeted_Region means?
Comment: how to start
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Have you looked at this page: https://github.com/vgteam/vg/wiki/Basic-Operations There is a pipeline illustration on this page that shows …
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Thanks for the suggestion. I've got `--gres=gpu:2` in my sbatch header (so I imagine it doesn't change much things (?) ). I also suspect a…
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by
李经纬
• 0
Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
Comment: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
by
Mensur Dlakic
★ 29k
For posterity, here is `nvidia-smi` output for our cluster: ``` +-------------------------------------------------------------------------…
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★ 29k
How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here. …
Comment: DiffBind error when calling dba.count
by
Irene
• 0
I am having the same issue with the same situation, so i do not understand what could be the problem...i do not know if you finally figure …
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by
Pierre Lindenbaum
166k
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153k
Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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thank you.
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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