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121,990 results • Page
628 of 2440
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3
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News:
Unix / scripting / research computing resource
scripting
parallel
hpc
unix
programming
4.3 years ago by
bacon4000
▴ 80
4
votes
9
replies
11k
views
How to find Standard Error (SE) values when not provided in GWAS summary stats?
meta-analysis
gwas
metal
plink
Standard error
updated 4.1 years ago by
h.d.green
• 0 • written 5.5 years ago by
ydadmehr
• 0
4
votes
7
replies
3.0k
views
can't run Aracne -- Java error
aracne
RNA-Seq
network
updated 4.3 years ago by
Federico Giorgi
▴ 740 • written 5.2 years ago by
rioualen
▴ 750
2
votes
3
replies
1.4k
views
Assembly of three biological replicated metagenomics data
Assembly
metagenomics
analysis
replicate
statistics
updated 4.3 years ago by
andres.firrincieli
3.9k • written 4.3 years ago by
bioAddict
• 0
4
votes
7
replies
2.8k
views
Should we keep only the uniquely mapped reads for gene expression
RNA-seq
updated 4.3 years ago by
jared.andrews07
★ 19k • written 4.3 years ago by
User000
▴ 750
0
votes
2
replies
1.7k
views
Plotting residuals for limma lmfit model
linearregression
limma
normality
residuals
4.3 years ago by
ritz
▴ 10
0
votes
7
replies
3.1k
views
What are the input files for lwaldron / metaphlanToPhyloseq.R ?
r
metagenomics
metaphlan
updated 4.3 years ago by
serene.s
• 0 • written 5.1 years ago by
c.e.chong
▴ 60
0
votes
1
reply
638
views
blastn for global alignment
global
BLAST
alignment
updated 4.3 years ago by
GenoMax
154k • written 4.3 years ago by
obalasz.spam
• 0
0
votes
2
replies
749
views
Default number of mismatches in bowtie -v alignment mode?
bowtie
4.3 years ago by
lbro
• 0
0
votes
3
replies
1.7k
views
samtools depth -r
WGS
4.3 years ago by
lz1903
▴ 10
0
votes
3
replies
1.9k
views
compilation terminated when R package installation in linux without superuser permission
r
spp
bzlib
4.3 years ago by
whaiyu06
▴ 80
14
votes
4
replies
1.7k
views
How to select columns from a dataframe of which the name ends with a specific word
R
updated 4.3 years ago by
zx8754
12k • written 4.3 years ago by
Fede_Santos95
▴ 20
2
votes
2
replies
1.2k
views
BWA aln, according to GDC DNA Seq Analysis Pipeline
scores
BWA
quality
GDC
Alignment
updated 4.3 years ago by
Zhenyu Zhang
★ 1.3k • written 4.3 years ago by
loy_loy
▴ 10
2
votes
5
replies
1.9k
views
To retrieve the transcript from gff file with the longest isoform
isoform
gff
4.3 years ago by
Aneesha
• 0
0
votes
2
replies
1.2k
views
Trouble with alignment using STAR - unknown error
RNA-seq
alignment
STAR
4.3 years ago by
foxiw
▴ 10
2
votes
0
replies
805
views
How to integrate two Seurat objects
scRNA-seq
Seurat
4.3 years ago by
zizigolu
★ 4.4k
0
votes
1
reply
1.2k
views
Circular plot for RNA seq - methylation data
methylome
plot
rnaseq
updated 4.3 years ago by
Papyrus
★ 3.1k • written 4.3 years ago by
simone.castellana
▴ 10
1
vote
2
replies
912
views
How does Belvu calculate conservation scores?
Conservation
Belvu
4.3 years ago by
jmungar2
▴ 10
0
votes
0
replies
1.4k
views
PYSCENIC - full garbage collection
PYSCENIC
SCENIC
GRN
CELL
SINGLE
4.3 years ago by
GiuliaAC
▴ 20
0
votes
0
replies
646
views
How to find allele frequency for a list of eQTLs based on finish/EUR population?
frequency
eQTLs
allele
4.3 years ago by
macsuejacques
• 0
0
votes
0
replies
600
views
Genome assembly
illumina
bam
genome
vcf
assembly
updated 4.3 years ago by
ATpoint
89k • written 4.3 years ago by
ph19042
• 0
1
vote
1
reply
1.3k
views
How to extract the shortest and the longest isoform from Trinity.fasta file?
assembly
fasta
trinity
updated 4.3 years ago by
andres.firrincieli
3.9k • written 4.3 years ago by
FadyNabil
▴ 20
2
votes
9
replies
5.6k
views
Looping over a function in R, and needing a variable name to save output as unique files
r
updated 4.3 years ago by
rodolfo.peacewalker
▴ 390 • written 4.3 years ago by
YanO
▴ 140
1
vote
2
replies
833
views
how to splice a gene sequence
assembly
4.3 years ago by
linqide0418
• 0
3
votes
1
reply
1.4k
views
Clarification on KEGG orthologs, why don't all have KEGG modules?
ortholog
database
kegg
updated 4.3 years ago by
andres.firrincieli
3.9k • written 4.3 years ago by
O.rka
▴ 750
4
votes
2
replies
1.5k
views
Subread-align: Properly-paired versus not properly paired
alignment
subread
subread-align
RNAseq
4.3 years ago by
rependo
▴ 40
2
votes
0
replies
849
views
Herald:
The Biostar Herald for Tuesday, June 15, 2021
herald
updated 4.3 years ago by
natay
20 • written 4.3 years ago by
Biostar
3.6k
2
votes
1
reply
1.7k
views
Molecular docking
pdbqt
docking
sdf
updated 4.3 years ago by
tothepoint
▴ 940 • written 4.3 years ago by
diabateoudou
• 0
1
vote
4
replies
1.5k
views
Looking for dataset with scRNA-seq data for normal (non cancer, non iPSCs) but prolifirating cells human (may be mouse or other )
RNA-seq
4.3 years ago by
Alexander
▴ 220
1
vote
1
reply
910
views
Interpret PCA as combinations of SNPs
PCA
SNPRelate
updated 4.3 years ago by
Alex Reynolds
36k • written 4.3 years ago by
Tam
• 0
0
votes
1
reply
1.3k
views
Buffer Error with bwa index
hg19
index
bwa
updated 4.3 years ago by
Pierre Lindenbaum
166k • written 4.3 years ago by
ariel
▴ 250
2
votes
1
reply
1.8k
views
getting a set of coverage/depth metrics for multiple regions
bedtools
samtools
updated 4.3 years ago by
Alex Reynolds
36k • written 4.3 years ago by
vaushev
▴ 20
0
votes
8
replies
2.1k
views
Annotation of 100kb region
Annotation
4.3 years ago by
bioinformatics.queries
▴ 70
8
votes
23
replies
5.9k
views
How to get the genes that contain the highest number of isoforms from a fasta file generated by trinity de novo?
assembly
fasta
trinity
updated 3.8 years ago by
sa.youssef
• 0 • written 4.3 years ago by
FadyNabil
▴ 20
0
votes
3
replies
1.5k
views
Graphic in LEfSe
Graphic
4.3 years ago by
pnmb.mbc20
• 0
0
votes
1
reply
1.4k
views
Matplotlib plot stops responding when trying to close it
python
python3
ProDy
matplotlib
4.3 years ago by
Kevin
▴ 70
4
votes
3
replies
2.2k
views
picard MergeBamAlignment fails to merge ubam and bam
picard
MergeBamAlignment
GATK
4.3 years ago by
Frieda
▴ 60
4
votes
5
replies
9.4k
views
6 follow
Where can I find mouse Gene MatriX file format (GMT)?
gene
RNA-Seq
next-gen
updated 4.3 years ago by
Zeynab
▴ 10 • written 7.7 years ago by
anu014
▴ 190
0
votes
0
replies
749
views
Add or make representative diagrams on the axes of a graph with R
graphs
ggplot2
data
visualization
R
4.3 years ago by
diego1530
▴ 80
3
votes
9
replies
2.5k
views
Query regarding WGCNA module
WGCNA
R
RNA-seq
updated 4.3 years ago by
Kevin Blighe
89k • written 4.3 years ago by
microorganism_001
▴ 30
0
votes
2
replies
1.4k
views
TCGA-BRCA download
BRCA
TCGA
updated 2.5 years ago by
Ram
45k • written 4.3 years ago by
science03
▴ 50
0
votes
0
replies
653
views
Genes in GO pathways
GO
pathways
4.3 years ago by
some1
▴ 10
1
vote
2
replies
2.9k
views
annotate VCF file with LRG ?
LRG
vcf
annotation
updated 3.9 years ago by
Ram
45k • written 11.2 years ago by
Richard
▴ 600
1
vote
11
replies
3.1k
views
Blast 2.11 not blasting all sequences in a file?
blast
4.3 years ago by
DNAngel
▴ 260
0
votes
5
replies
1.4k
views
Dock image for transcriptomics assembly
transcriptomics
docker
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
judhenaosa
▴ 50
0
votes
0
replies
2.3k
views
Why are there two peaks in per sequence GC content plot from FastQC report?
distribution
WGS
sequencing
GC
Illumina
4.3 years ago by
Meng
• 0
0
votes
4
replies
3.2k
views
Defining the threshold for reads and features
scRNA-seq
4.3 years ago by
zizigolu
★ 4.4k
0
votes
1
reply
1.5k
views
import metaphlan3 output to Phyloseq
Phyloseq
metagenomics
MetaPhaln3
Genomics
updated 4.3 years ago by
antonioggsousa
3.4k • written 4.3 years ago by
serene.s
• 0
0
votes
3
replies
1.3k
views
`samtools depth` reports all positions though I don't indicate `-a` or `-aa`
samtools
updated 4.3 years ago by
Lila M
★ 1.3k • written 4.3 years ago by
vaushev
▴ 20
7
votes
2
replies
1.3k
views
Forum:
Course on genome assembly and annotation
genomics
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
gubrins
▴ 350
121,990 results • Page
628 of 2440
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