Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,888 results • Page
664 of 2438
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
661
views
comparing distinct peaks from riboseq profiling results
ribosomal-profiling
ribo-seq
peaks
4.4 years ago by
Assa Yeroslaviz
★ 1.9k
4
votes
3
replies
2.6k
views
Liftover vs Ensembl Crossmap
crossmap
liftover
converter
assembly
ensembl
4.4 years ago by
Thind amarinder
▴ 340
1
vote
1
reply
740
views
tped files to bed with awk
plink
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
storm1907
▴ 30
10
votes
32
replies
5.4k
views
6 follow
Why my CD31+ endothelial cells RNAseq didn't express CD31?
CD31
HISAT2
endothelialcells
Stringtie
RNAseq
4.4 years ago by
Youyy
• 0
290
votes
55
replies
20k
views
41 follow
Forum:
What Do You Waste Your Time On
scripting
updated 2.6 years ago by
Ram
45k • written 12.4 years ago by
Asaf
10k
0
votes
2
replies
1.2k
views
How to add GO annotation terms (molecular function, component, biological process) to my results (DESeq2 RNA-seq analysis) in RStudio?
annotation
rnaseq
deseq2
goterms
rstudio
updated 4.4 years ago by
gglim
▴ 220 • written 4.4 years ago by
bekodar.01
• 0
0
votes
1
reply
1.1k
views
GFF/GTF file download from UCSC or gnomAD
GFF
updated 4.4 years ago by
Juke34
9.3k • written 4.4 years ago by
storm1907
▴ 30
0
votes
4
replies
2.1k
views
Low GQX
GQX
4.4 years ago by
sisalem
• 0
1
vote
2
replies
1.0k
views
MicroArray MetaAnalyse: Help Criticise/Suggest Better Idea for PhD thesis
Microarray
GWAS
Network
Metaanalysis
updated 2.5 years ago by
Ram
45k • written 4.4 years ago by
qmarulfiz
▴ 60
1
vote
1
reply
842
views
why hisat2 mapping sam file has many sam flags
sam
RNA-seq
sequencing
hisat2
genome
updated 4.4 years ago by
GenoMax
153k • written 4.4 years ago by
szp770
▴ 10
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Computer Systems Engineer at Berkeley Lab
systems
infrastructure
updated 2.5 years ago by
Ram
45k • written 4.4 years ago by
BerkeleyLab
▴ 70
4
votes
4
replies
3.4k
views
GATK markduplicates out of memory
Assembly
WGS
MarkDuplicates
GATK
updated 4.4 years ago by
Pierre Lindenbaum
166k • written 4.4 years ago by
williamsbrian5064
▴ 540
0
votes
1
reply
1.1k
views
Troubleshooting: rRNA depletion RNAseq no DE genes
R
RNA-seq
DESEq2
STAR
updated 4.4 years ago by
MatthewP
★ 1.4k • written 4.4 years ago by
oludhe
▴ 90
1
vote
2
replies
888
views
Does this output indicate my bam is paired end?
samtools
4.4 years ago by
curious
▴ 890
0
votes
0
replies
502
views
Individual Gene Association with GWAS SNP data
Limma
DE
GWAS
SNP
4.4 years ago by
Harrsha
• 0
2
votes
2
replies
1.6k
views
How to analyse a list of GO terms
gene ontology
4.4 years ago by
renandosreiss
▴ 10
14
votes
14
replies
3.9k
views
7 follow
Forum:
Bioinformatics startup market analysis
startup
written 4.4 years ago by
gtechbio
▴ 30
2
votes
2
replies
6.5k
views
How to count elements with a specific condition in csv file using python
code
python
csv
updated 4.2 years ago by
Ram
45k • written 4.4 years ago by
mumdooh
• 0
0
votes
1
reply
710
views
Does PLINK only deal with SNP?
PLINK
updated 4.4 years ago by
chrchang523
11k • written 4.4 years ago by
Julia_W
• 0
2
votes
4
replies
1.5k
views
Merge different VCFs from multiple individuals including singletons
VCFTools
Genomics
updated 4.4 years ago by
Ram
45k • written 4.4 years ago by
Mari
▴ 30
0
votes
2
replies
893
views
How to normalize 2 samples having 6 separate treatments
normalization
updated 4.4 years ago by
ATpoint
89k • written 4.4 years ago by
ntelkar
• 0
3
votes
2
replies
888
views
Phenotrex installation help
microbial
phenotrex
phenotypes
4.4 years ago by
sagrant
▴ 10
0
votes
2
replies
2.8k
views
In KisSplice, I already set "ulimit -s unlimited", but I am still getting stack limit error. Is there a work around this?
snp
kissplice
rna-seq
stack
KisSplice
updated 4.1 years ago by
Ram
45k • written 4.4 years ago by
bioinformaticsstudent
• 0
0
votes
0
replies
886
views
Job:
[Apply by 5/23 ] PhD scholarship on functional and evolutionary genomics
evolution
long-read
PhD
genomics
4.4 years ago by
Mari
▴ 30
2
votes
2
replies
2.9k
views
How To Find Data About Tss Of Mirna?
mirna
updated 4.4 years ago by
jim_grigor
• 0 • written 14.0 years ago by
Sunflow
▴ 10
0
votes
0
replies
903
views
SVA variable of interest in eQTL analysis
sva
eqtl
4.4 years ago by
Colari19
▴ 90
1
vote
3
replies
1.4k
views
Overall mappability of genome
gem
mappability
ngs
4.4 years ago by
boczniak767
▴ 880
2
votes
4
replies
3.8k
views
enrichGO() error: unable to find an inherited method for function ‘keytypes’ for signature ‘"GRanges"’
clusterProfile
4.4 years ago by
Trinh
▴ 10
5
votes
5
replies
2.1k
views
Why is there difference FASTA file in an Accession number?
uniprot
updated 4.4 years ago by
GenoMax
153k • written 4.5 years ago by
Trinh
▴ 10
1
vote
2
replies
1.7k
views
Identify coordinates from the VCF generated from Vg call
call
vg
vgtool
4.4 years ago by
puddingmeow516
▴ 10
17
votes
21
replies
4.7k
views
8 follow
Forum:
bioinformatics thesis
thesis
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
eridanus
▴ 40
0
votes
0
replies
706
views
News:
Learn to Analyze and Visualize Microbiome Data with Nephele & MicrobiomeDB
microbiome
updated 4.4 years ago by
jared.andrews07
★ 19k • written 4.4 years ago by
karlynn.noble
▴ 60
0
votes
0
replies
638
views
How to handle mis-annotated chimeric genes?
chimeric
MAKER
curation
annotation
4.4 years ago by
liorglic
★ 1.5k
0
votes
2
replies
1.5k
views
Vg Call, not detecting SV due to soft-clipping
vgteam
vg
variation
graph
4.4 years ago by
jcmouren
• 0
0
votes
0
replies
1.6k
views
Job:
Application data scientist (f/m/d)
Computational-biology
updated 2.5 years ago by
Ram
45k • written 4.4 years ago by
ina.jaschinski
• 0
0
votes
2
replies
1.0k
views
How to covert Plot_ly codes to ggplot2 codes?
R-studio
GWAS
visualization
ggplot2
4.4 years ago by
anikcropscience
▴ 270
0
votes
3
replies
1.7k
views
I tried to compare results which I got it from DESeq2, but got this error?
DeSeq2
4.4 years ago by
arulin
• 0
2
votes
3
replies
1.1k
views
Coverage required for 3' end RNA-seq methods
cel-seq2
updated 4.4 years ago by
Carlo Yague
9.0k • written 4.4 years ago by
Aspire
▴ 390
0
votes
0
replies
616
views
How to Write same Gene name in column with strain identifier!
awk
NJ
perl
Phylogeny
updated 4.4 years ago by
benformatics
4.2k • written 4.4 years ago by
Info.shi
▴ 30
3
votes
4
replies
2.6k
views
How can I remove ligands in PDB structure?
PDB
structure
protein
4.4 years ago by
jsw940
▴ 10
1
vote
3
replies
1.8k
views
Tool/method to calculate the sequence context of variants?
sequence
context
variant
4.4 years ago by
Ian
6.1k
0
votes
0
replies
1.6k
views
Midpoint root tree specification.
tree
iqtree
phylogeny
nwk
4.4 years ago by
K.Gee
▴ 40
0
votes
0
replies
699
views
Issue with PDB+chain to Pfam mapping and domain filter
Pfam
mapping
PDB
python
4.4 years ago by
jmungar2
▴ 10
2
votes
4
replies
1.0k
views
Indexing
0-based
index
1-based
4.4 years ago by
GG
• 0
0
votes
0
replies
561
views
Whole Metagenome Analysis of resistome dataset
metagenomics
ngs
4.4 years ago by
hafiz.talhamalik
▴ 350
5
votes
13
replies
4.3k
views
How to calculate percent coverage of each read for nanopore
alignment
nanopore
sequencing
4.4 years ago by
sonsunjirachote
• 0
0
votes
0
replies
643
views
How to correct single nucleotide variation due to PCR bias ?
datacorrection
rstudio
nucleotide
merge
4.4 years ago by
Gautier
• 0
3
votes
2
replies
1.4k
views
Multiple sequence alignment tools
sequence
Multiple
alignment
updated 4.4 years ago by
Joe
22k • written 4.4 years ago by
Acapmiolo
▴ 20
2
votes
2
replies
4.0k
views
Scatter plot of DEG in R
R
RNA-seq
Bioconductor
DEG
4.4 years ago by
ATCG
▴ 400
3
votes
0
replies
899
views
How to use IDBA-UD to perform scaffolding on assembled contigs?
IDBA-UD
assembly
MEGAHIT
scaffolds
contigs
4.4 years ago by
Rui
▴ 50
121,888 results • Page
664 of 2438
Recent Votes
Comment: Is this PCA plot correct??
Comment: How to load sam.gz files on IGV?
Comment: How to load sam.gz files on IGV?
Comment: How to debug faulty BBmap clumpify command?
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Comment: Fastq reads to csv - How can I make a csv with the read number of several fastq
Recent Locations •
All
Austria,
2 minutes ago
University of Manchester, UK,
4 minutes ago
Syracuse, NY, United States,
21 minutes ago
United States,
24 minutes ago
United States,
28 minutes ago
Spain,
33 minutes ago
United States,
34 minutes ago
Recent Awards •
All
Popular Question
to
manikin_python9f
• 0
Popular Question
to
stuckinanendlessfebruary
• 0
Popular Question
to
Gordon Smyth
★ 8.3k
Popular Question
to
Mark
▴ 60
Popular Question
to
Morris_Chair
▴ 370
Scholar
to
b.contreras.moreira
▴ 490
Popular Question
to
marongiu.luigi
▴ 760
Recent Replies
Comment: Yeast reference-based genome assembly
by
GenoMax
153k
> The gene originates from yeast, What does this mean? Are you putting a gene from a different genus/species into some other yeast? Can yo…
Comment: Variant analysis for mouse WES
by
alba
• 0
Hi, thanks for the suggestion! I’m aware of Ensembl VEP, and in fact, I already have my VCFs annotated with VEP. The challenge I’m facing i…
Answer: Structural Variant identification on pangenome graphs
by
colindaven
7.9k
There might be something here for you : https://github.com/colindaven/awesome-pangenomes Otherwise, I know creating a pangenome with `mi…
Comment: replace gene names in gff file
by
ja569116
• 0
Hi @juke34 Is it possible to specify the prefix/ custom gene name to rename all the genes in the gff3 file with AGAT, so that the differen…
Answer: Yeast reference-based genome assembly
by
colindaven
7.9k
Nanopore reads are long enough to create a full assembly. Why not first try to create a whole genome assembly with a tool like Flye if you …
Comment: Variant analysis for mouse WES
by
alba
• 0
I saw that but it looks like it only works for trinucleotideMatrix() specifically, I was looking to be able to generate rainfallPlot(), for…
Comment: RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
by
stuckinanendlessfebruary
• 0
Dr. Jeremy, Thank you sincerely for your time! I wanted to close the loop: the issue appears to have been the RTG Tools Docker image versi…
Answer: Conversion of Gene Name to Ensembl ID
by
Thanujay S
• 0
Hey! A bit late to the party! I’ve built a simple wrapper (named SESC) around biomaRt to streamline Ensembl ID conversions. It supports bo…
Comment: Variant analysis for mouse WES
by
barslmn
★ 2.4k
You can try Ensembl VEP which can also annotate organism other than human.
Comment: Variant analysis for mouse WES
by
GenoMax
153k
> I’d like to analyze using a package similar to maftools. Looks like `maftools` works with mouse data: https://github.com/PoisonAlien/ma…
Comment: Is this PCA plot correct??
by
GenoMax
153k
It would also help to add information about what kind of data this is and what you did to the data to get to this point.
Comment: How to load sam.gz files on IGV?
by
marongiu.luigi
▴ 760
I can now see the alignment, thank you.
Comment: How to load sam.gz files on IGV?
by
marongiu.luigi
▴ 760
Thank you, it worked!
Comment: Fungal Genome Assembly: In a messed up situation
by
SomeOne
▴ 240
HI, Just to add some information here. I tried that merging of Hifi + ONT data then assembly using hifiasm --ont. It didnot work as expect…
Comment: Is this PCA plot correct??
by
dthorbur
★ 3.1k
In addition to these comments, I would suggest checking other PCs, the first two PCs only explain a combined 39% of the variance. Since you…
Traffic: 4756 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6