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Recent Replies
Comment: EdgeR - relationship between logFC and coefficients
by
gBioStar5
•
0
Thanks a lot, this was very helpful. I'll keep that in mind.
Answer: EdgeR - relationship between logFC and coefficients
by
Gordon Smyth
★
7.1k
Results presented by topTags() are on the log2 scale. Coefficients stored internally by DGELRT are on the loge scale. If you convert from t…
Answer: Importing a fastq file
by
size_t
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run command `explorer.exe .` in wsl terminal, and then drag file to folder
Comment: Contig assembly task, errors
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Philipp Bayer
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Hi Ricardo! CAP3 is an 'older' overlap assembler from 1999 which is perfectly suited for these kinds of 'small' tasks. I used it last in my…
Comment: absolute path for symbolic links in Snakefile
by
Jesse
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770
That's really handy, and much more of a general solution than stripping off the directory names! So yifangt86, if you're on Linux you can …
Comment: Truncated metadata file report from ENA Portal API
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GenoMax
142k
Are you missing a `"` at the end of the URL. Doing
wget -O test.out "https://www.ebi.ac.uk/ena/portal/api/filereport?accession=PRJNA43…
Comment: Different output for read length
by
marco.barr
▴
100
very strange, I double checked the BAM file and it is the same one I used for your request. Are the commands I wrote above correct? How is …
Comment: Different output for read length
by
Pierre Lindenbaum
161k
the first read as a length of 1747, i wonder how you can just find '50'
$ wget -qO - "https://gist.githubusercontent.com/Macdot3/4650…
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★
2.4k
Yes, `CreateAssayObject` function is used for only expression matrix.
Comment: Different output for read length
by
marco.barr
▴
100
Here is my result, I hope you can see it.
[https://gist.github.com/Macdot3/4650243a10540d8c06f728ffc16a136c][1]
[1]: https://gist.gith…
Comment: Different output for read length
by
marco.barr
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100
I just published my link on paste, why can't I see my public paste on the site?
Comment: cellranger error message
by
Max
•
0
I'm having a similar issue. The sample_id matches the filename prefix before _S1_L001, but I get the error:
Log message:
Requested sample(s…
Comment: Different output for read length
by
marco.barr
▴
100
Thanks so much GenoMax, I'm sharing the link as you told me
Comment: Different output for read length
by
GenoMax
142k
Post the data at pastebin.com and add a link here or you could a GitHub gist. You were suspended by biostars SPAM bot since you pasted link…
Comment: Different output for read length
by
GenoMax
142k
Post the data at pastebin.com and add the link here. You were suspended by biostars SPAM bot since you pasted these links in quick successi…
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