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355 results • Page 4 of 8
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6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
6
votes
5
replies
7.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
6
votes
5
replies
1.4k
views
7 follow
Forum: What do you think of sci-hub?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
6
votes
3
replies
1.7k
views
Forum: lincRNA analysis pipeline and relevant database
lncRNA
updated 12 months ago by 43k • written 5.6 years ago by ★ 9.4k
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.3 years ago by ★ 1.7k
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
6
votes
5
replies
1.1k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.9 years ago by ▴ 30
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 12 months ago by 43k • written 6.0 years ago by ▴ 10
6
votes
8
replies
4.0k
views
6 follow
Forum: Workstation : More RAM or Faster RAM
RAM Configuration workstation
updated 12 months ago by 43k • written 5.6 years ago by ▴ 20
6
votes
6
replies
820
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
10 weeks ago by jared.andrews07 ★ 17k
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 12 months ago by 43k • written 6.1 years ago by ▴ 10
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 12 months ago by 43k • written 5.7 years ago by ▴ 40
5
votes
4
replies
1.0k
views
Forum: I always get the same Scholar Badge
meta
updated 12 months ago by 43k • written 6.1 years ago by 16k
5
votes
3
replies
878
views
Forum: price of MSI detection by NGS for 1 person
next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 20
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
5
votes
2
replies
1.3k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 11 months ago by 43k • written 5.1 years ago by 5.3k
5
votes
2
replies
417
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 8 weeks ago by 54k • written 8 weeks ago by • 0
5
votes
5
replies
948
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
5
votes
2
replies
385
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 4 weeks ago by 43k • written 5 weeks ago by ▴ 20
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 18 months ago by ▴ 70
5
votes
4
replies
616
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 12 weeks ago by 142k • written 12 weeks ago by ▴ 10
5
votes
3
replies
1.4k
views
Forum: Seeking ideas and guidance for an undergraduate project
modelling drug-discovery neural-network
updated 12 months ago by 43k • written 5.7 years ago by ▴ 10
5
votes
3
replies
651
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 5 months ago by ★ 27k • written 5 months ago by ▴ 20
4
votes
3
replies
1.2k
views
Forum: Cannot vote in mobil version
meta
updated 12 months ago by 43k • written 6.2 years ago by 16k
4
votes
2
replies
542
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
10 weeks ago by Anatoly A. ▴ 10
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
4
votes
3
replies
1.3k
views
Forum: Computation-Intesive Application in the field of bioinformatics
Computation-Intensive Application Software
updated 12 months ago by 43k • written 5.8 years ago by • 0
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 12 months ago by 43k • written 5.4 years ago by ▴ 10
4
votes
7
replies
1.6k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 12 months ago by 43k • written 5.8 years ago by ★ 2.4k
4
votes
3
replies
1.2k
views
Forum: TACC vs SDSC vs HTCondor
PBS
updated 12 months ago by 43k • written 5.8 years ago by ★ 9.4k
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 43k • written 4.6 years ago by ▴ 110
4
votes
0
replies
1.2k
views
Forum: Plotting Ensembl gene name changes between versions
R ensembl
updated 11 months ago by 43k • written 4.8 years ago by ▴ 600
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 43k • written 5.0 years ago by ★ 9.4k
4
votes
0
replies
3.5k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 11 months ago by 43k • written 5.0 years ago by 11k
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
4
votes
6
replies
991
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
4
votes
1
reply
733
views
Forum: Help with Bioinformatics Course
cancer
updated 11 months ago by 43k • written 3.7 years ago by • 0
4
votes
1
reply
985
views
Forum: Is there a way to filter biostars tags?
meta
updated 12 months ago by 43k • written 5.9 years ago by ▴ 40
4
votes
2
replies
1.3k
views
Forum: Should I study MSc bioinformatics in Europe or US?
career genomics
updated 12 months ago by 43k • written 5.6 years ago by ▴ 10
4
votes
3
replies
827
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 43k • written 4 months ago by ▴ 10
4
votes
2
replies
409
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 10
4
votes
0
replies
910
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 43k • written 4.6 years ago by 19k
355 results • Page 4 of 8
Recent Votes
Comment: Practical Haplotype Graph v2 not finding correct paths
A: How To Convert List Of Entrez Ids Into Gene Name
How To Convert List Of Entrez Ids Into Gene Name
A: RSeQC Output from infer_experiment.py - what does it mean?
A: findOverlaps function in R
Comment: What marks a De-Novo Genome assembly as FAILED?
A: How to extract specific chromosome from vcf file
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Recent Replies
Answer: Practical Haplotype Graph v2 not finding correct paths by beantkapoor16 ▴ 10
So, I just tested it and it's performing much better now. Most of the haplotype paths are coming from the expected haplotypes (australasica…
Comment: Kraken2 Custom Database non-deterministic results by Bjorn • 0
Thank you!
Comment: Generating a Bed file from a Fasta file by Pierre Lindenbaum 161k
there is not enough information. you have to show us the command you used, a snapshot of your fasta...
Comment: Practical Haplotype Graph v2 not finding correct paths by beantkapoor16 ▴ 10
That's great. I will test it and let you know how it goes. Thank you.
Comment: Generating a Bed file from a Fasta file by pirku • 0
I tried running BLAT, but the output looks like this. Seems like none of the sequences were mapped/aligned match mis- rep. N's Q gap…
Comment: Where to find old version of GATK best practice by GenoMax 142k
You could try and look up a snapshot of the page(s) - https://web.archive.org/ Which specific best practice are you referring to? https:/…
Comment: Generating a Bed file from a Fasta file by Pierre Lindenbaum 161k
you could run blast or any other aligner to get the coordinate(s) of your fasta on a reference genome.
Answer: Running STRUCTURE from command line by Arthur • 0
If it cans help, I got the same error message : There were errors in the input file (listed above). According to "mainparams" the inp…
Comment: CreateSeuratObject taking very long by Nitin Narwade ★ 1.6k
I am not sure whether it will speedup the conversion but you can give it a try. convert your dataframe into a sparse matrix before creatin…
Comment: Practical Haplotype Graph v2 not finding correct paths by pjb39 ▴ 220
The timing for your question is excellent. The fix was released yesterday.
Comment: vcf phasing by WouterDeCoster 47k
> I observed that it doesn't phase genotypes labeled as 0/0 How could such a genotype even be phased?
Comment: Super ehancers by Oburah • 0
Well-noted however just wondering what you me by GFF being shorter. Thank you![See the screeshot snap of the gff file][1] [1]: /media/i…
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
I know illumina will only give me high-quality contigs. the samples which are to be sequenced with Long_Short read sequence will be used as…
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Hi, Thank you for a detailed responce. Let me add some more informations. Long-Read is ~75X coverage. Short-Read is ~100X coverage. **For…
Comment: Pruning Phylogenetic Trees and Bootstrap Values by Klaus S ▴ 160
The best is to prune the tree and also the bootstrap trees and afterwards re-assign the bootstrap values to the tree. The bootstrap values …
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