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Limit : all time
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1,000 results • Page
3 of 20
Sort: Votes
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Views
Votes
Replies
47
votes
24
replies
6.6k
views
15 follow
Forum:
What's fascinating about Bioinformatics for potential students?
career
msc
updated 17 months ago by
Ram
43k • written 6.6 years ago by
Michael
54k
46
votes
9
replies
8.5k
views
10 follow
Forum:
Bioinformatics For Clinicians - What To Teach Them?
education
updated 14 months ago by
Ram
43k • written 10.4 years ago by
j
▴ 140
46
votes
12
replies
36k
views
6 follow
Forum:
BWA vs Bowtie 2 (Poll)
BWA
Poll
Bowtie2
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Irene@Sequencing.com
▴ 270
45
votes
35
replies
6.1k
views
12 follow
Forum:
looking for a bioinformatics project to do during military rotation
military
updated 22 months ago by
Ram
43k • written 6.7 years ago by
hasani.iut6
▴ 60
45
votes
23
replies
6.3k
views
6 follow
Forum:
biostar.slack.com: Chat for the biostars community -- [ feel free to join ]
chat
slack
updated 15 months ago by
Ram
43k • written 6.2 years ago by
Devon Ryan
104k
45
votes
19
replies
2.9k
views
9 follow
Forum:
Where and how NGS techniques are heading for the next 5 years?
next-gen
NGS
updated 12 months ago by
Ram
43k • written 6.9 years ago by
lakhujanivijay
5.8k
44
votes
11
replies
2.8k
views
6 follow
Forum:
Why can't we downvote on this forum?
meta
biostars
updated 13 months ago by
Ram
43k • written 7.5 years ago by
devenvyas
▴ 740
44
votes
11
replies
5.3k
views
7 follow
Forum:
Asking The Developers Before Asking Biostars
meta
updated 14 months ago by
Ram
43k • written 10.6 years ago by
Arnaud Ceol
▴ 860
43
votes
37
replies
2.6k
views
7 follow
Forum:
Checking the quality and reliability in bioinformatics
reproducibility
updated 12 months ago by
Ram
43k • written 6.6 years ago by
zizigolu
★ 4.3k
43
votes
16
replies
4.6k
views
10 follow
Forum:
Need Advice On How To Become A Senior Bioinformatician
advice
career
updated 14 months ago by
Ram
43k • written 11.0 years ago by
calicruz206
▴ 30
42
votes
15
replies
7.8k
views
8 follow
Forum:
Directions In Bioinformatics And Web-Based Data Visualization: Revisiting Javascript?
data-visualization
python
r
updated 14 months ago by
Ram
43k • written 11.5 years ago by
Josh Herr
5.8k
42
votes
21
replies
15k
views
10 follow
Forum:
A Database Of Signatures Of Selection In The 1000 Genomes Dataset
1000genomes
human
selection
updated 14 months ago by
Ram
43k • written 10.2 years ago by
Giovanni M Dall'Olio
28k
42
votes
8
replies
4.8k
views
13 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2017?
sequencing
survey
SNP
updated 15 months ago by
Ram
43k • written 6.4 years ago by
dago
★ 2.8k
42
votes
20
replies
3.4k
views
11 follow
Forum:
What are the most popular NGS tools?
ensembl
NGS
updated 13 months ago by
Ram
43k • written 8.1 years ago by
Emily
23k
42
votes
17
replies
38k
views
15 follow
Forum:
List Of Genome Sequencing Centers/Institutes
genomics
institutes
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Malachi Griffith
20k
41
votes
27
replies
6.0k
views
8 follow
Forum:
Why bioinformaticians need to know programming languages?
Python
R
Programming
updated 12 months ago by
Ram
43k • written 7.0 years ago by
nilo
▴ 90
40
votes
23
replies
4.2k
views
12 follow
Forum:
Why learn programming in bioinformatics?
Programming
updated 11 months ago by
Ram
43k • written 5.7 years ago by
joselu
▴ 110
40
votes
11
replies
7.0k
views
9 follow
Forum:
"An Explosion Of Bioinformatics Careers" - from Science Careers
career
updated 14 months ago by
Ram
43k • written 9.9 years ago by
Pawel Szczesny
3.2k
40
votes
24
replies
3.9k
views
13 follow
Forum:
What programming language do you use the most in your work? Which one do you like the best?
Programming
Python
R
Scripting
updated 14 months ago by
Ram
43k • written 3.3 years ago by
biotrekker
▴ 100
40
votes
11
replies
4.9k
views
6 follow
Forum:
what is next going to happen in bioinformatics?
current-research
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Mo
▴ 920
39
votes
25
replies
4.5k
views
9 follow
Forum:
Making a mac book Bioinfo ready (El Capitan)
mac
software-installation
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Eric Normandeau
11k
39
votes
21
replies
14k
views
10 follow
Forum:
Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Juke34
8.6k
38
votes
18
replies
4.2k
views
11 follow
Forum:
Should We Have A Biostar Conference Or Meeting?
conference
biostars
updated 15 months ago by
Ram
43k • written 10.9 years ago by
Michael
54k
38
votes
31
replies
2.9k
views
10 follow
Forum:
To the Biologists out there: What bioinf tool are you missing?
education
career
updated 13 months ago by
Ram
43k • written 7.8 years ago by
mschmid
▴ 180
38
votes
17
replies
3.2k
views
7 follow
Forum:
Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam
bam
samtools
updated 11 months ago by
Ram
43k • written 3.7 years ago by
kojix2
▴ 250
38
votes
19
replies
10k
views
10 follow
Forum:
Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.1 years ago by
morovatunc
▴ 550
37
votes
30
replies
5.1k
views
7 follow
Forum:
Spam In Rss Feeds
meta
RSS
updated 14 months ago by
Ram
43k • written 11.3 years ago by
Madelaine Gogol
5.3k
37
votes
13
replies
3.6k
views
6 follow
Forum:
Bringing Back Downvote
meta
updated 14 months ago by
Ram
43k • written 10.9 years ago by
lh3
33k
37
votes
16
replies
4.0k
views
9 follow
Forum:
Sanger sequencing is no longer the gold standard?
Sanger
NGS
updated 12 months ago by
Ram
43k • written 6.5 years ago by
lamteva.vera
▴ 220
36
votes
21
replies
19k
views
9 follow
Forum:
What Is Your Favorite Conserved Protein?
protein
conservation
updated 14 months ago by
Ram
43k • written 10.7 years ago by
Mary
11k
36
votes
39
replies
4.2k
views
11 follow
Forum:
Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
blast
RNA-Seq
alignment
next-gen-sequencing
updated 12 months ago by
Ram
43k • written 6.5 years ago by
dhbradshaw
▴ 130
36
votes
7
replies
3.0k
views
7 follow
Forum:
What are benefits of Pursuing Bioinformatics over Software Engineering?
career
updated 22 months ago by
Ram
43k • written 8.2 years ago by
graff1994
▴ 10
36
votes
2
replies
6.1k
views
Forum:
Brian Haas of the Trinity Assembler uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
36
votes
34
replies
2.9k
views
9 follow
Forum:
New to bioinformatics.....
gene
updated 11 months ago by
Ram
43k • written 6.1 years ago by
sms.00196
• 0
36
votes
18
replies
8.2k
views
Forum:
How Does Genomebrowse Free Genome Browser From Golden Helix Compare?
visualization
genome-browser
updated 3.1 years ago by
natay
20 • written 11.1 years ago by
Victor Lyuboslavsky
▴ 140
36
votes
8
replies
3.6k
views
6 follow
Forum:
Time Management Strategies and Advice for Bioinformaticians
professional-skills
updated 13 months ago by
Ram
43k • written 8.0 years ago by
sviatoslav.kendall
▴ 880
35
votes
19
replies
4.0k
views
Forum:
Crowd Sourcing The 'Analysis' Of The 'Big Foot' Genome
bigfoot
genome
updated 14 months ago by
Ram
43k • written 11.3 years ago by
Will
4.5k
35
votes
19
replies
3.8k
views
6 follow
Forum:
For the general public seeking advice from this community
diagnosis
rare-disease
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Mary
11k
35
votes
21
replies
3.1k
views
11 follow
Forum:
Should you restrict use of your software based on your political views?
software
updated 20 months ago by
Ram
43k • written 8.6 years ago by
Jean-Karim Heriche
27k
34
votes
12
replies
3.7k
views
11 follow
Forum:
How To Change An Expertise In Bioinformatics
career
updated 15 months ago by
Ram
43k • written 13.1 years ago by
Patrick
▴ 220
34
votes
11
replies
9.4k
views
13 follow
Forum:
Gallery: Computational tools for DNA methylation
computational-tools
methylation
updated 21 months ago by
Ram
43k • written 8.5 years ago by
Shicheng Guo
★ 9.4k
34
votes
5
replies
2.3k
views
Forum:
what we should reply when we are asked do you have any question?
career
interview
updated 12 months ago by
Ram
43k • written 7.0 years ago by
zizigolu
★ 4.3k
34
votes
12
replies
11k
views
9 follow
Forum:
Is going back to the wet lab worth it?
careerwet-lab
updated 13 months ago by
Ram
43k • written 7.4 years ago by
ropolocan
▴ 810
34
votes
22
replies
3.0k
views
11 follow
Forum:
Have we failed as bioinformatician in this time of COVID-19
Bioinformatician
COVID-19
updated 11 months ago by
Ram
43k • written 4.0 years ago by
heididunst
▴ 10
34
votes
13
replies
6.2k
views
11 follow
Forum:
Best Way To Learn Bioinformatics For System Level Programmers.
NGS
HPC
updated 14 months ago by
Ram
43k • written 10.3 years ago by
amjadcsu
▴ 90
34
votes
8
replies
2.7k
views
9 follow
Forum:
Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv
industry
career
updated 11 months ago by
Ram
43k • written 4.6 years ago by
'
▴ 300
34
votes
19
replies
7.9k
views
12 follow
Forum:
Programming Language In Bioinformatics
perl
python
updated 14 months ago by
Ram
43k • written 11.0 years ago by
AndreiR
▴ 260
34
votes
23
replies
5.3k
views
8 follow
Forum:
Unbelievably rapid NGS analysis by Churchill
sequencing
NGS
churchill
2.1 years ago by
Ram
43k
33
votes
17
replies
3.5k
views
7 follow
Forum:
What bioinformatics tools/software do not get enough recognition?
software
updated 14 months ago by
Ram
43k • written 9.5 years ago by
brentp
24k
33
votes
5
replies
16k
views
9 follow
Forum:
How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq
communication
analysis
pca
updated 21 months ago by
Ram
43k • written 8.4 years ago by
Kristin Muench
▴ 620
1,000 results • Page
3 of 20
Recent Votes
Answer: The total expressed genes in RNA-Seq data
C: Re-arrange conditions in Seurat
Genome Visualization Tools
Comment: Genome Visualization Tools
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
A: Best de novo assembler for insect genome ?
Comment: sci-RNA-seq
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Comment: Genome Visualization Tools
by
dlera.lozano
▴ 10
Thank you so much
Answer: Doubt about the process of annotation, detection, identification and classificat
by
Mensur Dlakic
★ 27k
Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Ram
43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Ram
43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Prawesh
• 0
thanks, it's working now.
Comment: Genome Visualization Tools
by
GenoMax
142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Trivas
★ 1.8k
You need to have indexed your bam/sam file using `samtools index`
Answer: Using ggplotly in R
by
jared.andrews07
★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
GenoMax
142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
Answer: RNAseq RNA content
by
noodle
▴ 580
There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
Comment: Where to get the following bed file?
by
wyuan37
• 0
Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file?
by
wyuan37
• 0
Thanks! Super helpful.
Answer: Post-imputation QC for input into GWAS analyses
by
LauferVA
4.2k
1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
GenoMax
142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
does this work with a single .bed file?
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