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1,000 results • Page
4 of 20
Sort: Votes
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Views
Votes
Replies
33
votes
12
replies
1.1k
views
7 follow
Forum:
Nextflow and self-made pipelines opinion
nextflow
pipeline
data-analysis
10 weeks ago by
karlaarz
▴ 110
33
votes
17
replies
3.5k
views
7 follow
Forum:
What bioinformatics tools/software do not get enough recognition?
software
updated 14 months ago by
Ram
43k • written 9.5 years ago by
brentp
24k
33
votes
5
replies
16k
views
9 follow
Forum:
How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq
communication
analysis
pca
updated 21 months ago by
Ram
43k • written 8.4 years ago by
Kristin Muench
▴ 620
32
votes
5
replies
5.6k
views
Forum:
ipython notebooks on bioinformatics and genomics
python
updated 13 months ago by
Ram
43k • written 8.9 years ago by
Pappu
★ 2.1k
32
votes
16
replies
12k
views
9 follow
Forum:
How to switch from bench research to computational biology?
career
updated 22 months ago by
Ram
43k • written 9.2 years ago by
yuggnurug
▴ 70
32
votes
9
replies
5.9k
views
Forum:
Embrace The Non-Googlers Of Biostars
meta
biostars
updated 15 months ago by
Ram
43k • written 10.9 years ago by
KCC
★ 4.1k
32
votes
14
replies
6.8k
views
9 follow
Forum:
Pat Schloss of Mothur uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
32
votes
13
replies
11k
views
10 follow
Forum:
What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics
phd
updated 14 months ago by
Ram
43k • written 11.8 years ago by
sentausa
▴ 650
31
votes
41
replies
2.7k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 11 months ago by
Ram
43k • written 4.2 years ago by
K.Gee
▴ 40
31
votes
7
replies
6.0k
views
9 follow
Forum:
Beginner in Bioinformatics / computational biology field
Bioinformatics
Computational-biology
updated 13 months ago by
Ram
43k • written 7.9 years ago by
tanvi.phaltane
▴ 70
31
votes
4
replies
5.6k
views
8 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
Assembly
sequencing
RNA-Seq
updated 13 months ago by
Ram
43k • written 7.4 years ago by
dago
★ 2.8k
31
votes
34
replies
7.5k
views
11 follow
Forum:
pros- and cons- : programming skills vs. GUI
programming
lecture
updated 13 months ago by
Ram
43k • written 8.5 years ago by
TriS
★ 4.7k
31
votes
13
replies
16k
views
8 follow
Forum:
Should I Pursue A Bioinformatics Msc?
career
updated 14 months ago by
Ram
43k • written 11.3 years ago by
biostepho
▴ 70
31
votes
16
replies
2.2k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Antonio R. Franco
★ 5.1k
31
votes
8
replies
3.8k
views
6 follow
Forum:
Getting Things Done In Bioinformatics (More I Know, Less I Do?)
literature
analysis
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Biomonika (Noolean)
3.2k
30
votes
27
replies
2.6k
views
11 follow
Forum:
How do you spend your time (productively) when your script is running?
time-management
updated 13 months ago by
Ram
43k • written 7.3 years ago by
venu
7.1k
30
votes
16
replies
2.3k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 11 months ago by
Ram
43k • written 4.0 years ago by
nkg.bb
• 0
30
votes
31
replies
3.8k
views
11 follow
Forum:
I need your help to find my future
internship
masters
career
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Baptiste
▴ 90
30
votes
5
replies
4.1k
views
Forum:
I'm applying for a non-PhD bioinformatics position in your lab. What do you look for?
sequencing
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
scical
▴ 100
30
votes
13
replies
3.7k
views
11 follow
Forum:
what is your daily must see bioinformatics web site?
learn
technology
updated 11 months ago by
Ram
43k • written 9.7 years ago by
Medhat
9.7k
30
votes
19
replies
10k
views
6 follow
Forum:
Programming language use distribution from recent programs / articles
programming-language
programs
updated 12 months ago by
Ram
43k • written 7.0 years ago by
Eric Normandeau
11k
29
votes
4
replies
7.9k
views
Forum:
Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error
bowtie2
bioconda
conda
tbb
updated 14 months ago by
Ram
43k • written 3.2 years ago by
mlbendall
▴ 240
29
votes
18
replies
2.7k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
29
votes
4
replies
6.9k
views
Forum:
Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 15 months ago by
Ram
43k • written 11.0 years ago by
jobinv
★ 1.1k
29
votes
21
replies
6.3k
views
Forum:
PhD vs Field application scientist in industry
career
updated 13 months ago by
Ram
43k • written 7.8 years ago by
Govi988
▴ 80
29
votes
17
replies
2.3k
views
6 follow
Forum:
Can Biostars use question template like Github issue/PR?
meta
biostars
template
updated 13 months ago by
Ram
43k • written 7.2 years ago by
shenwei356
8.5k
29
votes
18
replies
3.3k
views
7 follow
Forum:
Should I quit PhD program?
education
career
research
phd
updated 11 months ago by
Ram
43k • written 6.0 years ago by
George
▴ 30
29
votes
10
replies
6.5k
views
10 follow
Forum:
Interesting/useful/beautiful bio sequence viz tools
viz
python
visualisation
updated 14 months ago by
Ram
43k • written 6.2 years ago by
Joe
21k
29
votes
10
replies
3.2k
views
Forum:
How do you perform functional testing for your Bioinformatics tools?
development
testing
bug
reliability
updated 12 months ago by
Ram
43k • written 7.2 years ago by
shenwei356
8.5k
29
votes
16
replies
3.2k
views
Forum:
Making bioinformatics help and tutorials open
ensembl
updated 14 months ago by
Ram
43k • written 9.8 years ago by
Emily
23k
29
votes
13
replies
3.7k
views
6 follow
Forum:
Map of bioinformatics or who is bioinformatician.
self-study
updated 13 months ago by
Ram
43k • written 7.5 years ago by
dshulgin
▴ 260
29
votes
10
replies
9.3k
views
Forum:
Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf
tidy-data
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Giovanni M Dall'Olio
28k
28
votes
1
reply
6.9k
views
Forum:
Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops
genome-analysis
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Alex Reynolds
35k
28
votes
14
replies
6.9k
views
9 follow
Forum:
How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Eric Normandeau
11k
28
votes
13
replies
2.7k
views
Forum:
Are there any workshops which are tailored to non-beginners/intermediate bioinformatics?
workshop
updated 19 months ago by
Ram
43k • written 8.8 years ago by
Daniel
★ 4.0k
28
votes
14
replies
8.4k
views
8 follow
Forum:
Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry
PhD
career
updated 13 months ago by
Ram
43k • written 8.0 years ago by
mvasquez16
▴ 20
28
votes
11
replies
3.2k
views
9 follow
Forum:
Getting started with NGS analysis, common issues?
software-error
next-gen
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
Keith
▴ 50
28
votes
15
replies
4.5k
views
8 follow
Forum:
Anyone Use R For Their Bioinformatics Work?
r
updated 14 months ago by
Ram
43k • written 10.6 years ago by
arronslacey
▴ 320
28
votes
13
replies
1.5k
views
6 follow
Forum:
Suppose you have a sequencer that can read the genome end-to-end. What aspects of bioinformatics will become irrelevant?
future
updated 17 months ago by
Ram
43k • written 7.6 years ago by
Ayaan
▴ 40
28
votes
31
replies
5.8k
views
8 follow
Forum:
Biostar Ads Are Now Live. Feedback And Comments Are Sought.
biostars
updated 15 months ago by
Ram
43k • written 10.9 years ago by
Istvan Albert
100k
28
votes
7
replies
5.3k
views
Forum:
Open Source projects to contribute to
contribute
open-source
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
shane
▴ 90
28
votes
7
replies
1.9k
views
Forum:
Do you have favorite icons for bioinformatics?
ubuntu
updated 14 months ago by
Ram
43k • written 3.2 years ago by
kojix2
▴ 250
28
votes
15
replies
2.3k
views
12 follow
Forum:
Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by
Ram
43k • written 5.8 years ago by
ivan.radonov
▴ 10
27
votes
19
replies
4.6k
views
10 follow
Forum:
Google genomics cloud platform ?
genome
cloud
updated 13 months ago by
Ram
43k • written 8.9 years ago by
GouthamAtla
12k
27
votes
17
replies
5.1k
views
Forum:
Data sharing via Bittorrent is coming to Biostar
biostars
bittorrent
updated 15 months ago by
Ram
43k • written 9.8 years ago by
Istvan Albert
100k
27
votes
8
replies
4.8k
views
6 follow
Forum:
PhD in Bioinformatics: to continue, or not to continue? That is the question--
career
updated 14 months ago by
Ram
43k • written 10.0 years ago by
MAPK
★ 2.1k
27
votes
0
replies
8.1k
views
Forum:
Heng Li of BWA and Samtools uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
27
votes
22
replies
5.7k
views
8 follow
Forum:
Recommendations of Linux distros for beginners in bioinformatics
training
linux
updated 12 months ago by
Ram
43k • written 6.4 years ago by
ropolocan
▴ 810
27
votes
33
replies
3.8k
views
7 follow
Forum:
Biostars question catagories
statistics
biostars
meta
updated 13 months ago by
Ram
43k • written 7.6 years ago by
John
13k
27
votes
21
replies
9.3k
views
9 follow
Forum:
Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science
phd
updated 13 months ago by
Ram
43k • written 7.7 years ago by
BioinfGuru
★ 1.7k
1,000 results • Page
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Recent Votes
The Biostar Herald for Monday, May 13, 2024
Answer: Finding variants within a subset of a BAM file
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
Answer: Help with IGV abbreviation
Split multiallelic SNPs to biallelic from vcf
Filtering multi-allelic sites in VCF files
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Recent Replies
Comment: Using Cutadapt to trim adapters from paired-end small RNA sequence data
by
GenoMax
142k
You can simply ignore read 2. It is not adding any information since your small RNA's are going to be small and were completely sequenced b…
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
does this work with a single .bed file?
Comment: Finding variants within a subset of a BAM file
by
ramiro.barrantes
• 0
Actually, I found a solution in downloading "bam slices" from TCGA ([https://docs.gdc.cancer.gov/API/Users_Guide/BAM_Slicing/][1]) , which …
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
![enter image description here][1]Here is some representative data and an image in igv of one gene. I have loaded the .bed file in igv. As …
Answer: RNAseq RNA content
by
ntsopoul
▴ 60
I guess he/she means raw RNA. Roughly 2% of all RNA is mRNA the rest is rRNA. I think the first thing you need to figure out is with which …
Comment: RNAseq RNA content
by
ATpoint
82k
What is "row RNA"?
Comment: Overlapping Ranges within Granges object
by
ATpoint
82k
I would probably collapse overlapping regions with `reduce` to create the second GRanges. Can you add some representative data? Using dput?
Comment: Overlapping Ranges within Granges object
by
ntsopoul
▴ 60
I have one Granges object and not two. Every IRanges entry is the critical region of the gRNA. Can this still work?
Answer: Extracting only 4-fold degenerate sites from gene sequences/alignments?
by
J.
▴ 40
FYI if you also have this problem, this seems to be a pretty good solution: https://github.com/harvardinformatics/degenotate
Comment: Biomart issue, why so few 3'utrs?
by
GenoMax
142k
AFAIK "MANE" project is only for human protein-coding genes. One potential explanation. Out of the 2000 ID's only 125 may be MANE. https:…
Answer: Biomart issue, why so few 3'utrs?
by
i.sudbery
19k
The MANE-select transcripts are pairs of identically annotated transcripts in ReqSeq and Ensembl. The 3' UTR is the region where otherwise …
Comment: sci-RNA-seq
by
ATpoint
82k
Please understand that this impossibly can be answered without any code or plots, or details in general. "Hey my car does not start, it mak…
Comment: Biomart issue, why so few 3'utrs?
by
i.sudbery
19k
Which species is this?
Comment: How to access GWAVA software of data
by
GenoMax
142k
Please email the author (grsr at ebi.ac.uk) and let them know that the link above is not available.
Comment: CNVKIT - unable to produce scatter and diagram pdfs
by
Anitha
• 0
The normal samples is pooled into single reference for cohort. In this I have a doubt, here the normal sample referred as sample which took…
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