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1,000 results • Page
5 of 20
Sort: Views
Rank
Views
Votes
Replies
4
votes
12
replies
7.8k
views
6 follow
BWA error: no ID within the read group line
bwa
readgroups
RG
parallel
updated 3 months ago by
mgdrnl
▴ 10 • written 3.4 years ago by
whb
▴ 60
3
votes
7
replies
7.8k
views
RNA-STAR, mapping problem (number of reads)
RNA-Seq
updated 22 months ago by
Ram
43k • written 8.2 years ago by
mohikran
• 0
1
vote
1
reply
7.8k
views
Large number of Unassigned_NoFeature reads from featureCounts
RNA-Seq
featureCounts
tophat2
unassigned
counts
7.0 years ago by
price0416
▴ 10
2
votes
10
replies
7.8k
views
fq.gz file use
BioEdit
R
updated 14 months ago by
Ram
43k • written 5.2 years ago by
choi.yisoo.hi
• 0
5
votes
5
replies
7.8k
views
How can I get FastQC html report?
fastqc
NGS
fastqc error
fastqc report
updated 7.7 years ago by
EagleEye
7.5k • written 7.7 years ago by
tcf.hcdg
▴ 70
3
votes
5
replies
7.8k
views
Visualising the number of overlapping peaks in ChIP-seq studies
ChIP-Seq
updated 22 months ago by
Ram
43k • written 8.3 years ago by
James Ashmore
★ 3.4k
0
votes
10
replies
7.8k
views
Error: reads file does not look like a fastq file
fastq
bowtie2
ChIP-Seq
updated 14 months ago by
Ram
43k • written 7.7 years ago by
addilynn.beach
▴ 40
1
vote
13
replies
7.8k
views
makeblastdb doesn't create database output
makeblastdb
blast
fasta
NCBI
blast+
updated 7.0 years ago by
GenoMax
142k • written 7.0 years ago by
m.rhodes
▴ 50
0
votes
1
reply
7.8k
views
Merge VCF files using PLINK with repetition of the same VCF file for more than one individual
plink
vcf
vcftools
updated 6.7 years ago by
Biostar
20 • written 6.7 years ago by
sarah
• 0
2
votes
4
replies
7.7k
views
BLAST parameters and explanation
assembly
gene
alignment
sequence
genome
updated 5.7 years ago by
WouterDeCoster
47k • written 5.7 years ago by
a4appy23
▴ 50
2
votes
28
replies
7.6k
views
Memory use in indexing
Assembly
software error
updated 5.8 years ago by
Ram
43k • written 5.9 years ago by
marongiu.luigi
▴ 710
9
votes
27
replies
7.6k
views
How do I use Glimmer 3.02?
sequencing
updated 5.3 years ago by
ojelizodun
• 0 • written 6.2 years ago by
nattzy94
▴ 50
4
votes
3
replies
7.6k
views
How to plot variables in ggplot2 based on color by value
R
ggplot2
geom_point
variable
dataframe
4.3 years ago by
mohammedtoufiq91
▴ 250
0
votes
10
replies
7.6k
views
Multiple paired-end gzipped fastq files as input into hisat2 error - fastq format not recognised
RNA-Seq
hisat2
fastq
gzip
list input
7.6 years ago by
nwon
▴ 60
2
votes
9
replies
7.6k
views
6 follow
Read MAP and PED files in PLINK
GWAS
PLINK
updated 4 months ago by
GenoMax
142k • written 6.0 years ago by
ft821525
• 0
1
vote
3
replies
7.6k
views
How to normalize median-center log-transform an expression matrix
R
RNA-Seq
5.4 years ago by
user31888
▴ 130
1
vote
1
reply
7.6k
views
Needleman Wunsch algorithm coding in python for global alignment
python
global alignment
algorithm
needleman
wunsch
6.1 years ago by
hbleed121
▴ 10
2
votes
5
replies
7.6k
views
RNA seq analysis using STAR+StringTie
rna-seq
STAR
StringTie
7.3 years ago by
fatima
• 0
5
votes
3
replies
7.6k
views
reading gse series matrix data
python
4.8 years ago by
cs18s003
▴ 20
4
votes
8
replies
7.6k
views
GO term enrichment analysis using DAVID: How to start data analysis?
GO term enrichment
DAVID
GO Slim
Bar graph
Yeast
8.1 years ago by
Curie
▴ 20
0
votes
5
replies
7.6k
views
Export coverage Track from IGV
igv
bedtools
depth
genomecov
6.0 years ago by
MarVi
▴ 30
1
vote
9
replies
7.6k
views
SCTransform prior or after merging samples into one object?
Seurat
scRNAseq
merging samples
updated 2.1 years ago by
rohitsatyam102
▴ 860 • written 3.6 years ago by
annadv
• 0
1
vote
2
replies
7.6k
views
Converting vcf to fasta format
fasta
samtools
vcf
alignment
next-gen
updated 17 months ago by
Ram
43k • written 8.9 years ago by
JW
▴ 10
4
votes
3
replies
7.6k
views
How To Smooth Ecdf Plot
10.2 years ago by
Chirag Nepal
★ 2.4k
5
votes
2
replies
7.6k
views
DESeq2 log2 fold change
Nanostring
deseq2
5.7 years ago by
bioinfonerd
▴ 80
2
votes
7
replies
7.6k
views
Bowtie2 run out of memory
software-error
alignment
bowtie2
updated 15 months ago by
Ram
43k • written 9.0 years ago by
anon
▴ 50
0
votes
9
replies
7.6k
views
How to calculate RPM (reads per million mapped reads)?
RNA-Seq
updated 4.3 years ago by
Biostar
20 • written 7.2 years ago by
BehMah
▴ 50
2
votes
6
replies
7.5k
views
Python Help: Plots are not appearing in the Spyder Console
Python
Omics
4.7 years ago by
WUSCHEL
▴ 760
5
votes
4
replies
7.5k
views
Bwa Installation Failed After "Make" Command In Linux
bwa
updated 10.7 years ago by
Istvan Albert
100k • written 10.7 years ago by
Tonyzeng
▴ 310
3
votes
3
replies
7.5k
views
BS-seq: Using single end vs paired end in Bismark when Mapping efficiency is low
alignment
bisulfite
bismark
methylation
updated 7.2 years ago by
Biostar
20 • written 7.7 years ago by
noodle
▴ 70
4
votes
5
replies
7.5k
views
Understanding subsampling with Samtools
RNA-Seq
subsampling
samtools
seed
reads
updated 2.8 years ago by
boczniak767
▴ 850 • written 5.7 years ago by
m98
▴ 420
5
votes
22
replies
7.5k
views
SVM for classified gene expression data
R
svm
microarray
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Shaurya Jauhari
▴ 50
3
votes
8
replies
7.5k
views
What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,c,g to be converted to uppercase A,T,C,G before simulation?
genome
Assembly
7.2 years ago by
saranpons3
▴ 70
2
votes
6
replies
7.5k
views
Install Bowtie2 on Windows 10 Home edition
genome
next-gen
sequencing
software error
updated 6.4 years ago by
GenoMax
142k • written 6.4 years ago by
ste.lu
▴ 80
6
votes
4
replies
7.5k
views
vcftools Warning: Expected at least 2 parts in FORMAT entry
vcftools
5.0 years ago by
Zoey Zou
▴ 70
0
votes
5
replies
7.5k
views
How to create publication quality figures in vector scale format
DS visualizer
Ligplus
figure
updated 5.2 years ago by
Pierre Lindenbaum
161k • written 5.2 years ago by
DS
• 0
0
votes
2
replies
7.5k
views
conversion of ensembl to gene_symbol in seurat
Seurat
conversion
spatial
transcriptome
2.4 years ago by
Omics data mining
▴ 260
4
votes
7
replies
7.4k
views
How to create chain file to change genome coordinates from one genome version to another
remap
liftover
chain-format
updated 2.2 years ago by
Ram
43k • written 9.6 years ago by
iraun
6.2k
5
votes
3
replies
7.4k
views
EdgeR without replicate?
RNA-Seq
edgeR
Corset
differential'
4.7 years ago by
1234anjalianjali1234
▴ 50
1
vote
1
reply
7.4k
views
IGV Could not create index file when loading GFF3
IGV
GFF3
7.0 years ago by
emurb
▴ 10
3
votes
3
replies
7.4k
views
BWA and Soft clipping
alignment
genome
sequencing
7.5 years ago by
christopher.patterson3
• 0
1
vote
3
replies
7.4k
views
Sliding Window Ka/Ks (Dn/Ds) Analysis Via Python?
evolution
protein
10.4 years ago by
a1ultima
▴ 840
0
votes
2
replies
7.4k
views
How to use MACS2 to do peak calling
ChIP-Seq
updated 5.8 years ago by
Biostar
20 • written 5.9 years ago by
mikysyc2016
▴ 120
0
votes
3
replies
7.4k
views
The Problem of Computing FPKM by DESeq2
RNA-Seq
R
6.1 years ago by
gengyang12138
▴ 20
0
votes
2
replies
7.4k
views
Problems with PLINK on Mac OS X
Plink
Mac OSX
updated 7.9 years ago by
Biostar
20 • written 8.0 years ago by
payupar
• 0
1
vote
1
reply
7.4k
views
Multiple sequence alignment between multi fasta files ?
msa
alignments
updated 3.1 years ago by
Ram
43k • written 9.2 years ago by
GouthamAtla
12k
2
votes
6
replies
7.4k
views
PLINK returns NA values for all minor allele frequencies in my data
freq
plink
maf
SNP
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
yorgos.athanasiadis
▴ 60
1
vote
5
replies
7.4k
views
How To Create Cluster Files For Plink When Performing A Stratified Analysis On Three Different Population Datasets
deleted-post
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
NB
▴ 960
1
vote
10
replies
7.3k
views
BLAST memory usage
blast
updated 2.8 years ago by
reany
▴ 50 • written 7.6 years ago by
majid.hajibaba
▴ 10
2
votes
2
replies
7.3k
views
How to reorder the column of the heatmap following the cluster annotation?
ComplexHeatmap
heatmap
order
4.0 years ago by
huynguyen96.dnu
▴ 50
1,000 results • Page
5 of 20
Recent Votes
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
Comment: How does gene length effect the number of reads mapped
A: Filtering of VCF, INFO DP or FORMAT DP
What is the difference between GRCh37 and hs37? And hg19?
Answer: Duplicated sequence samtools
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Comment: Help with IGV abbreviation
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GeneC
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Thank you for the link and details
Comment: Help with IGV abbreviation
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Thank you very much for helping with the details.
Comment: How does gene length effect the number of reads mapped
by
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thank you :)
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I found the answer when using bcftools. Is there is a way to do this with FilterVcf? bcftools filter --include '(FMT/AD[0:1])/(FMT/A…
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the last line of SeqIO.write(record.....'fasta') in a for loop will input the the last record into new fasta file and it will only contain …
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