Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
5 of 20
Sort: replies
Rank
Views
Votes
Replies
10
votes
15
replies
6.2k
views
DIAMOND blast imported into MEGAN6 has no taxonomic assignment
blast
MEGAN6
Taxonomy
DIAMOND
7.5 years ago by
Farbod
★ 3.4k
7
votes
15
replies
2.2k
views
very low coverage when mappin genomic DNA
mapping
coverage
DNA
genomic
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
Lila M
★ 1.2k
5
votes
15
replies
1.6k
views
Get list of gene signatures published
bailey
genes
subtype
pancreas
3.4 years ago by
sabin
▴ 50
1
vote
15
replies
3.8k
views
Fastx quality filter
next-gen
RNA-Seq
software error
sequencing
updated 7.4 years ago by
Ram
43k • written 7.4 years ago by
kriti.awasthi23
▴ 10
6
votes
15
replies
1.6k
views
Reads partly within an exon
RNA-Seq
6.8 years ago by
benjyrolls
▴ 70
0
votes
15
replies
2.6k
views
Strategy for generating a consensus sequence for 100 complete bacterial genomes?
consensus seq
mauve
5.9 years ago by
Alec Watanabe
▴ 60
1
vote
15
replies
1.5k
views
How to reduce my dataset in order to plot it?
correlation
igraph
updated 4.8 years ago by
Biostar
20 • written 5.0 years ago by
pablo
▴ 300
2
votes
15
replies
4.1k
views
Bowtie2 error :: (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped)
next-gen
SNP
alignment
updated 4.1 years ago by
wm
▴ 560 • written 4.1 years ago by
shrutidabral
▴ 10
5
votes
15
replies
2.2k
views
Is this a valid analysis?
geo
rankprod
analysis
microarray
7.5 years ago by
randalljellis
▴ 90
0
votes
15
replies
3.7k
views
Identify genes in a tophat aligned bam/sam file
blast
alignment
rna-seq
gene
updated 17 months ago by
Ram
43k • written 8.9 years ago by
gchaves
• 0
1
vote
15
replies
2.0k
views
Samtools merge Illumina and PB bam file empty
Illumina
samtools
Bam
PacBio
updated 14 months ago by
Ram
43k • written 3.8 years ago by
talbots
▴ 30
6
votes
15
replies
2.5k
views
processing in strelka2 with multiples bam file in directory
strelka2
updated 2.4 years ago by
aldhairmedico
▴ 70 • written 4.4 years ago by
bioguy24
▴ 230
7
votes
15
replies
7.2k
views
6 follow
blastn error - NCBI C++ Exception
assembly
blast
alignment
updated 2.1 years ago by
lieven.sterck
15k • written 3.1 years ago by
sunnykevin97
▴ 980
1
vote
15
replies
3.4k
views
How to perform multiple alignment using MAFFT?
genome
alignment
gene
sequence
3.1 years ago by
anikcropscience
▴ 230
4
votes
15
replies
4.0k
views
Paired-read alignment length from BAM/SAM file
bam
sam
paired-read
alignment
6.9 years ago by
Soumitra Pal
▴ 10
5
votes
15
replies
1.6k
views
NGS Sequencing depths
next-gen
sequencing
gene
7.3 years ago by
sliproach
▴ 10
3
votes
15
replies
3.2k
views
Less and less genes predicted with each iteration of SNAP/MAKER
maker
annotation
snap
gene prediction
genomics
updated 2.7 years ago by
jaredbernard
▴ 30 • written 4.2 years ago by
mrmrwinter
▴ 30
2
votes
15
replies
2.2k
views
to get each covariate with PC loading in PCA
RNA-seq
PCA
5.4 years ago by
Grace_G
▴ 20
4
votes
15
replies
3.3k
views
Adding Multiple readgroups to BAM file
GATK
ReadGroups
8.1 years ago by
vakul.mohanty
▴ 270
9
votes
15
replies
1.4k
views
Construction of single sequence assembly out of contigs
Contigs
Bacteria
Genome
WGS
5 months ago by
analyst
▴ 50
1
vote
15
replies
4.4k
views
Ultrafast alignment of short sequences to a genome (with up to 5 mismatches!)
genome
alignment
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Aurelie MLB
▴ 360
1
vote
15
replies
1.7k
views
Single Cell RNA Seq
scTransform
Harmony
scRNAseq
Seurat
9 months ago by
scRNA2023
• 0
5
votes
15
replies
1.9k
views
Testing uniform distribution of SNPs across chromosome
uniform
vcf
SNP
5.0 years ago by
misterie
▴ 110
2
votes
15
replies
1.6k
views
How to call all the allele in samples
SNP
6.1 years ago by
Kritika
▴ 260
20
votes
15
replies
30k
views
8 follow
Converting SNP from chr:pos to rs number using PLINK?
plink
SNP
updated 21 months ago by
Ram
43k • written 8.4 years ago by
dam4l
▴ 200
0
votes
15
replies
2.2k
views
Chromosome accession numbers correspond to which chromosome?
bam
chromosome
bed
18 months ago by
amy__
▴ 160
10
votes
15
replies
1.8k
views
Can't find a variant which suppose must have in a vcf file
variant-calling
bcftools
nf-core
11 months ago by
Chris
▴ 280
2
votes
15
replies
4.2k
views
How to interpret reads mapped to genome from samtools flagstat vs TopHat align_summary.txt ?
RNA-Seq
8.1 years ago by
Vasu
▴ 770
2
votes
15
replies
1.6k
views
from protein to tRNA combinations
RNA-Seq
rna-seq
written 3.4 years ago by
shiningsky000
• 0
3
votes
15
replies
5.6k
views
Pairwise sequence alignment with Biojava?
sequence-alignment
biojava
java
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Bioaln
▴ 360
7
votes
15
replies
4.3k
views
Biopython Pairwise Alignment output
biopython
needleman
global alignment
4.2 years ago by
tommaso.green
• 0
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq
differential expression
4.6 years ago by
guillaume.rbt
★ 1.0k
3
votes
15
replies
2.8k
views
fastq reads with primers and truseq indexed adapter
sequencing
next-gen
sequence
7.2 years ago by
jomo018
▴ 720
6
votes
15
replies
2.7k
views
Why can't I reproduce the same heat map
ggplots
R
RNA-Seq
updated 5.8 years ago by
Biostar
20 • written 5.9 years ago by
Za
▴ 140
1
vote
14
replies
2.0k
views
Counts all read zero after alignment?
alignment
rna-seq
updated 23 months ago by
Ram
43k • written 2.8 years ago by
tul66893
• 0
5
votes
14
replies
1.7k
views
Interpretation for lowfrevariant
vcf
6.4 years ago by
Tania
▴ 180
3
votes
14
replies
1.6k
views
How to extract just the reads ID, start position and lenght from the alliigned file?
next-gen
sequencing
updated 5.8 years ago by
ATpoint
82k • written 5.8 years ago by
vellryba
• 0
6
votes
14
replies
3.3k
views
mapping RNAseq reads to a genbank isoforme that is not in Reference Annotation
RNA-Seq
sequence
cufflinks
new isoform in rnaseq
updated 22 months ago by
Ram
43k • written 8.3 years ago by
fta.mirzadeh
• 0
2
votes
14
replies
1.9k
views
Issue with replicating from a research paper-motifs
sequence
RNA
FASTA
MEME
motif
updated 5.0 years ago by
GouthamAtla
12k • written 5.0 years ago by
joshua.steier
▴ 20
0
votes
14
replies
1.9k
views
analyzing cel files
chip
snp
updated 2.8 years ago by
benformatics
3.9k • written 2.8 years ago by
scipio04
• 0
0
votes
14
replies
3.5k
views
6 follow
HISAT2: an "IndexError: index out of range"
alignment
RNA-Seq
software error
rna-seq
updated 3.7 years ago by
tiancaigg
▴ 30 • written 4.2 years ago by
1713307477
• 0
2
votes
14
replies
4.7k
views
Error: Help understand Trimmomatic ZLIB input stream error
Trimmomatic
5.7 years ago by
James Reeve
▴ 130
0
votes
14
replies
2.2k
views
Bioinformatics tutoring
differentially
genes
expressed
microarray
updated 2.7 years ago by
Michael
54k • written 2.7 years ago by
bioinformatics
▴ 40
0
votes
14
replies
3.2k
views
FastQC reults /probloms in loading
RNA-Seq
7.5 years ago by
Arash
▴ 30
2
votes
14
replies
2.3k
views
How to map by bwa with 50 mismatches?
bwa
7.6 years ago by
agata88
▴ 870
8
votes
14
replies
2.6k
views
RNA-Seq analysis with standard p-value
RNA-Seq
7.3 years ago by
####
▴ 220
1
vote
14
replies
3.1k
views
In this Python script I want to save result of print(traj_rmsd) in an output.xvg file. I am unable to open this file and it's showing following mess…
mdtraj
python
molecular dyanamics
updated 7.3 years ago by
Ram
43k • written 7.3 years ago by
naveen100787
• 0
5
votes
14
replies
5.8k
views
SPAdes output with assembling warning
spades
assembling
iontorrent
sequence-reads
5.6 years ago by
DanielC
▴ 170
9
votes
14
replies
3.1k
views
vcf to xls wrong columns
vcf
7.8 years ago by
cristina_sabiers
▴ 110
1
vote
14
replies
2.5k
views
Extract gRNA sequence using cutadapt
cutadapt
trimming
crispr
sequencing
updated 18 days ago by
GenoMax
142k • written 4.5 years ago by
Swimming bird
▴ 20
1,000 results • Page
5 of 20
Recent Votes
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
A: Bcftools merge taking too much time and producing large file
Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
Answer: Filter Genome for Specific Sites
Recent Locations •
All
United States,
1 minute ago
Belgium,
2 minutes ago
United States,
7 minutes ago
United States,
12 minutes ago
United States,
16 minutes ago
Hungary,
17 minutes ago
United States,
17 minutes ago
Recent Awards •
All
Scholar
to
GenoMax
142k
Popular Question
to
tothepoint
▴ 800
Popular Question
to
safeassli
▴ 10
Popular Question
to
curious
▴ 750
Popular Question
to
manaswwm
▴ 510
Popular Question
to
Raghad
• 0
Scholar
to
Pierre Lindenbaum
161k
Recent Replies
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
Comment: Trimming tool
by
Ram
43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results
by
GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient?
by
Pedro
• 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
Traffic: 1636 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6