Limit : all time
all time today this week this month this year
1,000 results • Page 5 of 20
Sort: Votes
Rank Views Votes Replies
8
votes
20
replies
2.5k
views
Converting runpsipred Script to Work on Windows OS
psipred windows
updated 23 months ago by 43k • written 5.8 years ago by ▴ 270
8
votes
11
replies
5.8k
views
RNASeq gender identification
RNA-Seq
6.7 years ago by popayekid55 ▴ 110
8
votes
12
replies
3.5k
views
fastq file format error
fastq illumina
updated 5.0 years ago by 161k • written 5.0 years ago by ▴ 350
8
votes
15
replies
2.0k
views
RNAseq differential expression analysis : no significative FDR but significative GO enrichment
RNA-Seq differential expression
4.5 years ago by guillaume.rbt ★ 1.0k
8
votes
6
replies
941
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
6 months ago by Matteo Ungaro ▴ 100
8
votes
8
replies
1.9k
views
Sequence alignment algorithm for big size genes in MATLAB
alignment Matlab next-gen
7.0 years ago by r.tor ▴ 50
8
votes
11
replies
4.1k
views
STAR can not detect this chimeric read
RNA-Seq fusion STAR
updated 7.5 years ago by 20 • written 7.7 years ago by 11k
8
votes
7
replies
584
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 12 weeks ago by 43k • written 12 weeks ago by ▴ 100
8
votes
4
replies
2.4k
views
Global Sequence Alignment
alignment
11.0 years ago by behrang • 0
8
votes
11
replies
2.0k
views
using STAR instead of HISAT2
STAR
updated 21 months ago by 43k • written 21 months ago by ▴ 260
8
votes
13
replies
1.7k
views
Mapped reads not mapping to a real sequence?
bam sam samtools kallisto
14 months ago by txema.heredia ▴ 110
8
votes
6
replies
1.3k
views
How to apply bioinformatic in vaccine design?
Vaccine
updated 18 months ago by ★ 2.5k • written 18 months ago by ▴ 50
8
votes
11
replies
4.9k
views
Increasing kmer limit in SPAdes
Assembly Bacterial Spades Velvet
7.8 years ago by rrcutler ▴ 120
8
votes
11
replies
3.6k
views
Semantic Similarity selection in REVIGO: which is better? many clusters or few?
go revigo gene ontology
6.5 years ago by Farbod ★ 3.4k
8
votes
25
replies
3.0k
views
construction of a database
sql noSQL neo4j database
updated 13 months ago by 43k • written 3.0 years ago by ▴ 20
8
votes
7
replies
3.9k
views
6 follow
Compatibility between my reference genome and GTF file
rna-seq hisat2 alignment reference genome
5.6 years ago by Batu ▴ 250
8
votes
5
replies
3.2k
views
7 follow
What is the best way to merge multiple fasta files containing contigs?
Assembly Anvi’o fasta
updated 5.3 years ago by 11k • written 5.3 years ago by • 0
8
votes
6
replies
1.2k
views
I have 2 identical jupyter notebooks and I get BiomartException when I run one but not the other.
biomart python
updated 4.3 years ago by 20 • written 4.3 years ago by ▴ 50
8
votes
3
replies
1.2k
views
Package installation error using Bioconda
antismash Bioconda
17 months ago by A_heath ▴ 160
8
votes
10
replies
2.0k
views
FASTA of translated amino acid sequences in their six reading frames, which one is the optimal?
aminoacid protein peptide Reading optimal frames
2.8 years ago by Luis999 ▴ 20
8
votes
7
replies
1.3k
views
grep with -f switch is not working
grep
updated 4.4 years ago by 11k • written 4.4 years ago by ▴ 30
8
votes
5
replies
1.7k
views
differential expression analysis with DESeq2 & edgeR
RNA-Seq
3.5 years ago by Rob ▴ 170
8
votes
7
replies
1.1k
views
Why does Ensembl VEP provide HGVSg for some variants and not others?
vcf VEP
11 months ago by Jeremy Leipzig 22k
8
votes
6
replies
5.7k
views
miRanda output meaning?
rna-seq
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 40
8
votes
7
replies
4.1k
views
Error with Bowtie 2
bowtie2 alignment
6.9 years ago by valerie ▴ 100
8
votes
8
replies
1.7k
views
6 follow
DESeq2 adjusted p-values of 0 when p-value > 0.05
RNA-seq DEseq2
updated 3.0 years ago by ▴ 390 • written 3.0 years ago by • 0
8
votes
5
replies
910
views
Why some genome assemblies don't have annotation?
genome assembly
5.0 years ago by 860101959 ▴ 10
8
votes
4
replies
2.0k
views
using different tools to identify differential exprssed genes
rna-seq RNA-Seq R
updated 19 months ago by 43k • written 8.7 years ago by ▴ 20
8
votes
6
replies
4.4k
views
Bwa Aln -Q 15 When To Use It? What Does It Do?
bwa trimming
updated 11.8 years ago by 100k • written 11.8 years ago by ▴ 640
8
votes
5
replies
12k
views
samtools tview symbols
samtools
updated 18 months ago by 43k • written 8.8 years ago by ★ 1.4k
8
votes
5
replies
841
views
Frustrated with DEA results
microarray differential-expression
updated 7 months ago by ★ 6.0k • written 7 months ago by • 0
8
votes
4
replies
2.3k
views
Implementing a naive javascript-based de Bruijn graph
debruijn graph javascript algorithm
8.0 years ago by Pierre Lindenbaum 161k
8
votes
9
replies
3.1k
views
error in rstudio
csv matrix rstudio
updated 19 months ago by 43k • written 8.7 years ago by ★ 4.3k
8
votes
5
replies
1.1k
views
Bioinformatics Definitions
genome
updated 2.9 years ago by ★ 2.5k • written 2.9 years ago by ▴ 40
8
votes
14
replies
2.4k
views
6 follow
Definition of "=" in comparing two genes
sequencing gene
updated 2.5 years ago by 43k • written 9.8 years ago by • 0
8
votes
11
replies
2.7k
views
directionality of RRBS
directional non-directional RRBS
updated 2.8 years ago by ★ 2.9k • written 2.9 years ago by ▴ 140
8
votes
13
replies
2.4k
views
Issue about install Cutadapt in ubuntu1404
cutadapt
7.1 years ago by Joe ▴ 30
8
votes
20
replies
3.0k
views
Why does cufflinks split this transcript?
RNA-Seq cufflinks assembly
6.3 years ago by corend ▴ 70
8
votes
1
reply
8.6k
views
Correlation heatmaps: use correlation as clustering distance or not?
heatmap RNA-Seq clustering
5.0 years ago by CuriousGuy ▴ 90
8
votes
4
replies
2.2k
views
Use Of Terms In Genome-Wide Analysis: Phenotype / Functionality / Fitness
12.8 years ago by 2184687-1231-83- ★ 5.1k
8
votes
30
replies
5.2k
views
Per Base Sequence Content
sequencing fastqc genome sequence
updated 4.1 years ago by ▴ 560 • written 4.1 years ago by ▴ 20
8
votes
6
replies
2.6k
views
for low coverage RNAseq how many reads assigned is the bare minimum for differential gene expression analysis
RNA-Seq
5.2 years ago by senowinski ▴ 30
8
votes
9
replies
1.5k
views
superimpose
discovery ds visualizer
2.9 years ago by Alex ▴ 20
8
votes
5
replies
14k
views
The comparison between HISAT2 and Tophat2
RNA-Seq Tophat2 HISAT2
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 50
8
votes
20
replies
2.7k
views
Getting read depth for normal and tumour
R WGS vcf
5.1 years ago by zizigolu ★ 4.3k
8
votes
5
replies
1.0k
views
Why could we infer a physical time scale (e.g. a billion year) from a phylogenetic analysis?
phylogeny phylogenetic tree
4.5 years ago by johnnytam100 ▴ 110
8
votes
6
replies
2.3k
views
Using Bandage to finish ambiguous long-read assembly?
Assembly Bandage long reads Unicycler
updated 5.3 years ago by 20 • written 5.4 years ago by ★ 2.0k
8
votes
16
replies
1.4k
views
what is the ideal normalistation methods for TCGA gene expression or DNA methylation dtasets?
gene next-gen
4.3 years ago by Chaimaa ▴ 260
8
votes
7
replies
6.9k
views
I got low overall alignment rate running HiSAT2
RNA-Seq hisat hisat2 alignment
7.7 years ago by sslee1015 • 0
8
votes
3
replies
3.4k
views
which tool is used for separating forward and reverse from paired end fastq
Assembly
6.8 years ago by ranjini.shakthi • 0
1,000 results • Page 5 of 20
Recent Votes
Answer: RNA-seq library size - significant sample discrepency
A: Sjdboverhang Option In Star
Comment: High Malat-1 expression in single cell data
Comment: Gene Specific coverage from WGS data
Answer: ATAC-Seq and RPKM
Answer: MSA and distance matrix in R
Comment: MSA and distance matrix in R
Recent Locations • All
India, 2 minutes ago
Ireland, 3 minutes ago
France, 4 minutes ago
Spain, 4 minutes ago
ETH Zurich, 7 minutes ago
India, 8 minutes ago
United Kingdom, 9 minutes ago
Recent Awards • All
Popular Question to anikcropscience ▴ 230
Popular Question to Omics data mining ▴ 260
Popular Question to JACKY ▴ 140
Popular Question to Scott McKay ▴ 30
Popular Question to A. Domingues ★ 2.7k
Scholar to LChart 3.9k
Popular Question to bhumm ▴ 140
Recent Replies
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C by Michael 54k
Why does your question sound like an assignment (if it's not, reformulate it, note you are in no position to give the volunteers here assig…
Answer: Converting Nebula Genomics Data to 23andMe Format by Michael 54k
Hi, Thank you for your contribution, here is your *free* code review: - This scenario is sort of ideal for a snakemake workflow and I th…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C by qwertyuiop26 • 0
I'm sorry for any confusion or inconvenience. I'm seeking guidance on which search algorithms are used in the FM-index. I've done extensive…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
Answer: Understanding STAR output (Aligned.out.sam file) by i.sudbery 19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C by Michael 54k
So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
Answer: What is the proper way to identify the cell types of scRNAseq cluster? by ATpoint 82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
Comment: How to compute TPM normalized values for TCGA miRNA data? by swbarnes2 14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
Comment: Understanding STAR output (Aligned.out.sam file) by swbarnes2 14k
What do the alignments look like in IGV?
Comment: HCL database download by sooni ▴ 20
I solved the problem! Thanks!
Comment: Gene Specific coverage from WGS data by Adyasha • 0
Thank you, here I am giving you some example , suppose I have bam files . 1.bam 2.bam 3.bam 4.bam now I want to see Spike gene coverage in …
Answer: Bioinformatics Analyst - Laboratory Medicine and Pathology by Xiaofen • 0
I'm having a problem and I can't find the button to post, how do you post?
Comment: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU by MICOS • 0
Contest question details: **To effectively address the accuracy and efficiency issues of clustering algorithms used for spatial transcript…
Comment: HCL database download by sooni ▴ 20
I would like to download top markers for each subpopulation data. Is there no way? It seems different from the DGE data.
Comment: Understanding STAR output (Aligned.out.sam file) by GenoMax 142k
Refer to SAM alignment format: https://samtools.github.io/hts-specs/SAMv1.pdf Check section 1.4.
Traffic: 2621 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6