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121,829 results • Page 420 of 2437
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9
votes
2
replies
1.2k
views
How to achieve dislocation comparison, filtering and fusion of adjacent rows in a data table in R
r matrix comparison filtering loop
3.3 years ago by Chilly ★ 1.3k
7
votes
8
replies
2.2k
views
Forum: Can we lock posts related to merging vcf files?
vcf
updated 2.8 years ago by 45k • written 3.3 years ago by 2.9k
0
votes
2
replies
806
views
Read counts by coordinates-Chromosome
RNAseq
updated 3.3 years ago by 153k • written 3.3 years ago by ▴ 10
0
votes
0
replies
525
views
Getting protein names after annotation
augustus annotation
3.3 years ago by schulpen_91 ▴ 30
0
votes
1
reply
725
views
Extracting genomic coordinates for a Variant calling pipeline
VCF Genomic-coordinates Samtools Variant-calling
updated 2.2 years ago by 45k • written 3.3 years ago by ▴ 70
0
votes
1
reply
1.0k
views
GRanges strand identification
GRanges R bam
updated 3.3 years ago by 4.2k • written 3.3 years ago by ▴ 140
5
votes
0
replies
999
views
Job: Permanent Position as Bioinformatician at the National Genomics Infrastructure (Sweden)
Stockholm Sweden Genomics SciLifeLab Sequencing
3.2 years ago by Matthias Zepper 5.1k
3
votes
2
replies
1.6k
views
How to add Ensembl id to cluster.markers in Seurat
id Ensembl
3.3 years ago by yang.zhizhang ▴ 10
2
votes
4
replies
1.6k
views
How to perform differential gene expression analysis with only one replicate in each condition
RNA-seq DEG DESeq2 sequencing
updated 3.3 years ago by 56k • written 3.3 years ago by ▴ 320
0
votes
2
replies
848
views
IGV is not showing the low frequency variants
Variant_Visualization IGV
3.3 years ago by k.manojkumar2991 ▴ 10
1
vote
1
reply
713
views
How to easily fix a file without exons?
annotation gff
updated 3.3 years ago by 9.3k • written 3.3 years ago by • 0
7
votes
9
replies
2.2k
views
Batch correction for scRNAseq when wildtypes and mutants were sequenced in separate batches?
batch correction cell single sequencing scRNAseq RNA
updated 3.3 years ago by 4.8k • written 3.3 years ago by • 0
0
votes
1
reply
2.6k
views
Calculating percentage of ribosomal genes in single cell data
scRNAseq ribosome rnaseq singlecell
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 50
2
votes
0
replies
1.4k
views
Job: Product Manager (Biosciences)
Manager Product Biosciences
3.3 years ago by jyu ▴ 90
2
votes
2
replies
952
views
Cell debris during single cell prep
single-cell debris dissociation tissue
updated 3.3 years ago by 89k • written 3.3 years ago by • 0
6
votes
6
replies
1.9k
views
Best practice for merging across lanes
RNA-Seq
updated 3.2 years ago by ▴ 20 • written 3.3 years ago by ▴ 20
1
vote
2
replies
940
views
Can I host private data on Gosling.js genome browser?
Gosling
updated 3.3 years ago by 103k • written 3.3 years ago by • 0
0
votes
14
replies
3.2k
views
Corrplot heatmap crunched up and unreadable
Corrplot heatmap
3.3 years ago by mropri ▴ 170
8
votes
8
replies
24k
views
BWA index - is it neccesary?
bwa index
updated 3.3 years ago by 89k • written 5.8 years ago by ▴ 80
0
votes
4
replies
1.4k
views
How to change GCA_ to NC_ annotations (RefSeq)
NCBI RefSeq
updated 3.3 years ago by 103k • written 3.3 years ago by ▴ 30
2
votes
2
replies
1.0k
views
Create a heatmap of only significant correlations
Correlation Protein expression heatmap
updated 3.3 years ago by 45k • written 3.3 years ago by ▴ 170
3
votes
4
replies
1.7k
views
Error on R shiny app metaOmics; object %AND% not found
Shiny R metaOmics
updated 3.3 years ago by ★ 1.7k • written 3.3 years ago by • 0
0
votes
2
replies
896
views
convert position to start and end
chromosome end vcf start position
3.3 years ago by mera El ▴ 10
0
votes
0
replies
927
views
Forum: Bioinformatics for understanding cancer and other diseases
cancer omics
updated 2.7 years ago by 45k • written 3.3 years ago by ★ 1.5k
5
votes
8
replies
2.0k
views
Decontaminating plant genome assembly
decontaminate contaminants Genome assembly genome
3.3 years ago by Sadik Muzemil ▴ 20
4
votes
4
replies
1.9k
views
slurm configuration for cromwell server
cromwell slurm wdl
3.3 years ago by Eugene A ▴ 190
0
votes
0
replies
697
views
BQSR scatter intervals
gatk bqsr intervals scatter
3.3 years ago by Eugene A ▴ 190
3
votes
3
replies
1.7k
views
BWA MEM -P option
alignment bwa
updated 2.7 years ago by 45k • written 3.3 years ago by • 0
0
votes
0
replies
487
views
How to convert position of variant in cDNA between different transcript?
Clinvar
updated 2.2 years ago by 45k • written 3.3 years ago by ▴ 10
1
vote
3
replies
1.2k
views
match bin number with the coordinate for each chromosome
chromosome bins coordinates
3.3 years ago by mthm ▴ 80
2
votes
4
replies
1.3k
views
data set download from NCBI Datasets
NCBI Datasets Sequences
updated 3.3 years ago by 6.2k • written 3.3 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Job: Researcher Positions in Mens X Machina Lab, Computer Science Department of the University of Crete
MachineLearning ComputationalBiology Research AppliedMathematics statistics
3.3 years ago by ioannis • 0
2
votes
9
replies
4.6k
views
Error in DiffBind. Please HELP!
Analysis NGS ATAC R DiffBind
updated 3.3 years ago by ★ 2.1k • written 4.1 years ago by • 0
5
votes
4
replies
1.6k
views
Which statistic test should be used for GC-content comparison?
research-tools nucleic-acids research-design biostatistics statistics
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 10
1
vote
0
replies
1.6k
views
Job: 1 Bioinformatician (m/f/d)
epigenomics metabolomics genomics biostatistics
updated 2.6 years ago by 45k • written 3.3 years ago by ▴ 10
1
vote
1
reply
845
views
Poly(A) analysis for nanopore reads
ployA nanopore rna-seq mRNA
updated 3.3 years ago by 7.8k • written 3.3 years ago by ▴ 70
0
votes
1
reply
2.1k
views
Het/Mixed Indel identification tools
SNP sanger indel
updated 3.3 years ago by ★ 2.0k • written 10.5 years ago by • 0
0
votes
6
replies
1.7k
views
Possible rRNA contamination in one sample
hisat2 featureCounts STAR rRNA RNA-Seq
3.3 years ago by bioinfo355 • 0
1
vote
1
reply
691
views
Align unmapped reads to reference vector sequence
RNA-seq fasta Alignment fastq
updated 3.3 years ago by 15k • written 3.3 years ago by ▴ 30
0
votes
1
reply
787
views
Geneious vs Perl script of IN SILICO PCR
PCR Geneious
updated 17 months ago by 45k • written 3.3 years ago by • 0
0
votes
0
replies
581
views
Encode Chip-seq data selection questions
Chip-seq Encode
updated 3.3 years ago by ★ 3.1k • written 3.3 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 3.3 years ago by ★ 3.0k • written 4.1 years ago by ▴ 40
0
votes
0
replies
533
views
scRNA-seq accurately captures expression of mitochondrial genes in neurons?
scRNA-seq
3.3 years ago by Aaron ▴ 30
2
votes
2
replies
1.2k
views
Compare human genes with c.elegans
genomics Genome comparitive
3.2 years ago by drajangirija ▴ 10
0
votes
0
replies
788
views
how to make core genome accumulation curve in r vegan
pangenome r rarefaction vegan genome
3.3 years ago by nahm • 0
8
votes
2
replies
1.2k
views
Python script to process NGS data
python
updated 2.7 years ago by 45k • written 3.3 years ago by ▴ 140
3
votes
3
replies
1.4k
views
Count values based on condition
sequence
updated 3.3 years ago by 14k • written 3.3 years ago by ▴ 10
1
vote
17
replies
3.5k
views
6 follow
Shell scripting looping help
Linux shell-scripting
updated 3.3 years ago by ★ 1.5k • written 3.3 years ago by ▴ 30
1
vote
5
replies
2.1k
views
BRAKER - Genome annotation, software error ?
Genome Software
updated 23 months ago by 45k • written 3.3 years ago by ▴ 1000
0
votes
0
replies
839
views
Running ADMIXTURE on .ped files
ped bed ADMIXTURE plink Stacks
3.3 years ago by Austin • 0
121,829 results • Page 420 of 2437
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Comment: Creating Seurat Object from DropViz metacells and annotations?
Comment: how to start
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Comment: how to start
Comment: When to merge RNA-seq files with multiple sequencing lanes
Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
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Comment: Learning Bioinformatics doing Projects by Anjali • 0
thank you.
Comment: Statistical test of difference between two conditions and account for the batch by ATpoint 89k
Are the batches biological replicates?
Comment: how to start by shelkmike ★ 1.7k
If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
Answer: how to start by shelkmike ★ 1.7k
I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization by Bastien Hervé 6.4k
For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
Answer: how to start by yura.grabovska ▴ 820
* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization by ATpoint 89k
"ward.D2" -- top of the pops in terms of interpretatble clusters from gene expression data in my hands, the rest is...often crytpic.
Comment: High percentage of intronic/intergenic reads in RNA-seq by i.sudbery 22k
I'd expect to see more or less what they see in your reference. Somewhere between half and two thirds of reads mapping to exons. The low fr…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization by Bastien Hervé 6.4k
As the whole presentation relies on a distance matrix and elements aggregation by hierarchical clustering, it would be helpful to better un…
Comment: Perform Hierarchical Clustering in R with ggdendro Visualization by GenoMax 153k
> Read in data Add an example of what is in `data.csv`.
Comment: How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank? by GenoMax 153k
That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
Comment: How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank? by dce1ee77 • 0
Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
Comment: Ribosome profiling by GenoMax 153k
Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
Comment: How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank? by GenoMax 153k
Have you followed the insturctions for GenBank submissions here: https://submit.ncbi.nlm.nih.gov/about/genbank/ In any case it would be be…
Comment: Difficulty Imputing Missing SNPs for Haplotype Construction in PyPGx by Aleksandra ▴ 110
The denser the panel, the better. TOPMed provides maximum density and the best coverage of rare variants. It is the most powerful option, b…
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