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950
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Plotting PCA chart using biopython
python matplotlib biopython
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
1
vote
4
replies
2.4k
views
How to retrieve KO IDs for a list of genes?
KEGG database
updated 4.0 years ago by ★ 1.7k • written 4.1 years ago by ▴ 40
0
votes
0
replies
770
views
How to convert .mol files to cdx?
cdx mol chemdraw
updated 2.2 years ago by 45k • written 4.1 years ago by • 0
2
votes
4
replies
2.1k
views
What does .bim .bed .fam stands for?
plink fam bim bed
updated 4.0 years ago by ★ 1.7k • written 4.1 years ago by • 0
3
votes
4
replies
1.7k
views
Chipseq visualization how to draw the figure
peaks Chipseq
4.1 years ago by Binghong ▴ 20
1
vote
0
replies
815
views
KEGG pathway draw
KEGG transcriptome RNAseq
4.1 years ago by najibveto ▴ 130
1
vote
1
reply
1.1k
views
So many variants detected.
gatk4 variants
4.1 years ago by Mehmet ▴ 820
0
votes
0
replies
699
views
How to generate feature Data(fData)
Cicero scATAC-seq
4.1 years ago by bill • 0
4
votes
3
replies
3.3k
views
Creating a variation graph for Giraffe alignment from assemblies
vg vgteam
updated 4.1 years ago by ▴ 760 • written 4.1 years ago by ▴ 30
1
vote
2
replies
1.8k
views
Advice on organizing large GSVA heatmap
rnaseq gsva heatmap
4.1 years ago by Morgan S. ▴ 90
5
votes
3
replies
1.7k
views
proportion of variance
variance gene SNP
updated 4.1 years ago by 4.8k • written 4.1 years ago by ▴ 30
0
votes
0
replies
1.5k
views
Tutorial: Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
dge kallisto rnaseq sleuth
4.1 years ago by mo • 0
0
votes
1
reply
1.0k
views
GSEA and over-representation analysis of many genes
GSEA DE ORA RNAseq
updated 3.7 years ago by ▴ 20 • written 4.1 years ago by ▴ 30
1
vote
12
replies
5.6k
views
7 follow
Error when trying to import GTF files using rtracklayer's import function
annotation rtracklayer software error
4.1 years ago by Marcel • 0
1
vote
1
reply
2.7k
views
PYMOL: Output Polar Contacts Between Chains to Text File
PyMol Python
updated 4.1 years ago by 45k • written 4.1 years ago by ▴ 10
1
vote
0
replies
674
views
integrative multiomic data
analysis multiomics integrative
4.1 years ago by rob.costa1234 ▴ 310
0
votes
5
replies
1.7k
views
Inquiry related to vcf file and formatting
vcf bcftools
updated 2.5 years ago by 45k • written 4.1 years ago by ▴ 150
0
votes
0
replies
650
views
Difference in alignment length between FASTA and HitTable
FASTA BLAST
4.1 years ago by Leah F • 0
2
votes
2
replies
2.5k
views
Is subtelomeric region and pericentromeric region defined in human genome?
genome human pericentromeric subtelomeric
updated 4.1 years ago by • 0 • written 8.0 years ago by ▴ 40
2
votes
1
reply
789
views
blastpgp -b parameter?
blast
updated 4.1 years ago by ★ 29k • written 4.1 years ago by ▴ 80
0
votes
3
replies
2.0k
views
Can someone explain the differences between various 1000 genome project and gnomad call sets? Also any straightforward PCA implementation on them?
wgs
updated 4.1 years ago by 45k • written 4.1 years ago by • 0
0
votes
0
replies
723
views
Job: Data Stewardship Community Manager
Management Data Community engagement
4.1 years ago by Hannah • 0
6
votes
4
replies
1.5k
views
News: Upcoming online training courses
Python R
4.1 years ago by Physalia-courses ★ 2.6k
8
votes
11
replies
2.2k
views
6 follow
Forum: Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article opinion
updated 2.5 years ago by 45k • written 4.9 years ago by 13k
0
votes
4
replies
1.8k
views
How to create a BED12 file defining UTR sequences
Sequences UTRs BED12
updated 4.1 years ago by 9.0k • written 4.1 years ago by ▴ 10
1
vote
2
replies
1.1k
views
PLINK ASSOC understanding the results
A1 A2 SNP ASSOC PLINK
4.1 years ago by Michal Nevo ▴ 140
4
votes
1
reply
1.1k
views
Tools for Alternative Splicing Events in RNA-Seq analysis
RNA-Seq
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 70
4
votes
5
replies
1.4k
views
heatmap column(sample) names disordered
heatmap.2 deseq2 Studio R
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 10
0
votes
0
replies
724
views
Sequencing file conversion
seurat processing sequence scATAC-seq data CellRanger
4.1 years ago by bill • 0
1
vote
2
replies
1.3k
views
Is it normal for RCorrector to remove millions of reads?
filtering read RCorrector Trinity RNAseq
updated 4.1 years ago by ★ 2.9k • written 4.1 years ago by ▴ 30
0
votes
10
replies
2.5k
views
Replace multiple text with corresponding text
replacement text
4.1 years ago by fec2 ▴ 50
1
vote
3
replies
1.4k
views
Analysing RNA seq data
rna-seq annotation bioconductor
updated 4.1 years ago by ▴ 20 • written 4.1 years ago by ▴ 20
0
votes
0
replies
904
views
no variant remained after GenotypeGVCFs gatk4
GenotypeGVCFs gatk4 variant
4.1 years ago by Mehmet ▴ 820
0
votes
0
replies
826
views
Sortmerna error
rrna rnaseq sortmerna
4.1 years ago by Stella • 0
0
votes
1
reply
919
views
How to select dataset from 1000 genome
1000genomes vcf
updated 2.5 years ago by 45k • written 4.1 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Postdoc position in phylogenomics and evolution of beetles
evolution beetles genomics
updated 2.5 years ago by 45k • written 4.1 years ago by • 0
3
votes
1
reply
2.1k
views
%% error in Rstudio
seurat r
updated 23 months ago by 45k • written 4.1 years ago by • 0
0
votes
0
replies
624
views
Mapping transcripts to mitogenome
alignment
4.1 years ago by wes ▴ 90
3
votes
7
replies
3.4k
views
Read group info
BWA bwa-mem2
updated 4.1 years ago by ▴ 20 • written 4.1 years ago by ▴ 70
1
vote
1
reply
2.5k
views
Seurat to Trajectory Analysis
scRNA seurat Pseudotime Trajectory
updated 4.1 years ago by 89k • written 4.1 years ago by • 0
0
votes
0
replies
788
views
scRNAseq STAR create index how to set --sjdbOverhang
scRNAseq STAR sjdbOverhang
4.1 years ago by Binghong ▴ 20
0
votes
6
replies
2.4k
views
Allele frequency calculation
AF VCF snp calc
updated 4.1 years ago by ▴ 480 • written 4.1 years ago by ▴ 150
1
vote
0
replies
733
views
Sequence alignment in Subio on personal PC
expression differential alignment raw analysis count sequence gene fastq
4.1 years ago by catalyst ▴ 10
0
votes
0
replies
695
views
What is the best way to publish data from LIMS/ELN to DataLake
ELN DataLake Warehouse LIMS
4.1 years ago by Kubendra • 0
0
votes
0
replies
639
views
Codon usage with unknown/unspecified Nucleotides - coRdon
nucleotides Codon unspecified Usage coRdon
4.1 years ago by lucas.caue.jacintho ▴ 30
0
votes
1
reply
962
views
How to find the co ordinates of long reads (simulated by Badreads) with respect to the reference genome
long-reads reference-genome assembly
updated 17 months ago by 45k • written 4.1 years ago by ▴ 20
0
votes
0
replies
1.7k
views
Job: Multiple data scientist positions in computational biomedicine
biomedicine data-science machine-learning
4.1 years ago by pandey.gaurav ▴ 200
0
votes
8
replies
2.6k
views
From EC terms to GO terms to GO enrichment
enrichment EC terms GO
4.1 years ago by margot.27.muller ▴ 30
0
votes
0
replies
764
views
Is there any way to customise the colour codes for multiple-sequence alignment (MSA)?
alignment Python genomics R phylogeny
4.0 years ago by Kumar ▴ 120
0
votes
0
replies
661
views
linkage disequilibrium and haplotype analysis of GWAS .
plink plink1.9 GWAS
updated 2.5 years ago by 45k • written 4.1 years ago by • 0
121,831 results • Page 594 of 2437
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Are the batches biological replicates?
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> Read in data Add an example of what is in `data.csv`.
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That is unfortunate. Perhaps try one more time to see if you can reach a more considerate help desk person with this try. In dealings with …
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Yes, I tried asking support for help, but I received a rude response. I was too embarrassed to ask again.
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Were https://www.genewiz.com/ and/or Novogene https://www.novogene.com/ on your list already? Several university sequencing core labs may a…
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Have you followed the insturctions for GenBank submissions here: https://submit.ncbi.nlm.nih.gov/about/genbank/ In any case it would be be…
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The denser the panel, the better. TOPMed provides maximum density and the best coverage of rare variants. It is the most powerful option, b…
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