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1,000 results • Page 2 of 20
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8
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2
replies
12k
views
Forum: List of popular bioinformatics software/tools
software
updated 6 months ago by 40k • written 9.0 years ago by ▴ 20
60
votes
14
replies
11k
views
16 follow
Forum: Interesting bioinformatics blogs (2017 edition)
blogs
updated 7 months ago by 40k • written 6.5 years ago by 47k
37
votes
21
replies
11k
views
10 follow
Forum: Orientation of PE reads a review of --fr --ff and --rf meanings
RNA-Seq
updated 4 months ago by 40k • written 5.0 years ago by 8.2k
6
votes
5
replies
11k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 3 months ago by 40k • written 3.6 years ago by ▴ 20
32
votes
16
replies
11k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 15 months ago by 40k • written 8.6 years ago by ▴ 70
8
votes
9
replies
11k
views
Forum: How to calculate FPKM values of interested gene
cufflinks FPKM bowtie2 RNA-Seq
updated 23 months ago by 40k • written 9.2 years ago by ▴ 130
12
votes
8
replies
11k
views
8 follow
Forum: "Separate enrichment analysis of pathways for up- and downregulated genes"
enrichmnet-analysis
updated 6 months ago by 40k • written 9.4 years ago by ★ 2.9k
32
votes
13
replies
10k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 7 months ago by 40k • written 11.2 years ago by ▴ 650
15
votes
14
replies
10k
views
6 follow
Forum: How Should I Go About Preparing For My Bioinformatics Phd Admissions Interview?
phd
updated 7 months ago by 40k • written 9.6 years ago by ▴ 150
144
votes
62
replies
10k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
meta biostars
updated 7 months ago by 40k • written 12.6 years ago by ★ 2.9k
15
votes
6
replies
10k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 5 months ago by 40k • written 7.5 years ago by 11k
24
votes
15
replies
9.9k
views
11 follow
Forum: PhD in bioinformatics or biostatistics as a wet-lab scientist?
biology statistics PhD
updated 6 months ago by 40k • written 9.1 years ago by ▴ 70
3
votes
2
replies
9.9k
views
Forum: How To Provide Reference Sequence Dictionary To Reordersam?
picard gatk
updated 7 months ago by 40k • written 9.9 years ago by 8.2k
38
votes
19
replies
9.9k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 5 months ago by 40k • written 7.5 years ago by ▴ 550
34
votes
12
replies
9.8k
views
9 follow
Forum: Is going back to the wet lab worth it?
careerwet-lab
updated 5 months ago by 40k • written 6.8 years ago by ▴ 790
10
votes
6
replies
9.8k
views
Forum: Is it worth getting a Masters in Bioinformatics, financially?
career
updated 6 months ago by 40k • written 9.3 years ago by ▴ 20
12
votes
6
replies
9.7k
views
Forum: Looking for opinions on PhD programs in Genetics and Genomics/Bioinformatics
PhD Genomics
updated 19 months ago by 40k • written 8.9 years ago by ▴ 110
0
votes
2
replies
9.5k
views
Forum: Secondary Structure Prediction software RNA/DNA
dna secondary-structure software rna
updated 6 months ago by 40k • written 8.9 years ago by ★ 3.6k
50
votes
8
replies
9.3k
views
6 follow
Forum: Encode Commentary From Dan Graur
encode
updated 7 months ago by 40k • written 10.6 years ago by 16k
5
votes
4
replies
9.2k
views
Forum: List of unresolved problems in Computational Biology / Bioinformatics?
computational-biology problems
updated 6 months ago by 40k • written 8.7 years ago by ★ 1.3k
11
votes
12
replies
9.2k
views
Forum: need ideas for bioinformatics research project (undergraduates)
alignment sequence
updated 17 months ago by 40k • written 8.7 years ago by ▴ 10
86
votes
29
replies
9.1k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU brexit EBI politics
updated 5 months ago by 40k • written 7.3 years ago by 53k
11
votes
10
replies
8.9k
views
Forum: Looking For Bioinformatics Job In Germany
bioinformatician career
updated 6 months ago by 40k • written 9.5 years ago by ▴ 520
29
votes
10
replies
8.9k
views
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf tidy-data
updated 19 months ago by 40k • written 8.8 years ago by 28k
67
votes
40
replies
8.7k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python
updated 19 months ago by 40k • written 8.9 years ago by ★ 2.9k
13
votes
7
replies
8.7k
views
Forum: The struggle between fastq and fastq.gz, compressed v/s uncompressed file formats
fastq
updated 4 months ago by 40k • written 6.3 years ago by 5.8k
4
votes
5
replies
8.7k
views
Forum: Computer Science's Perspective Comparison : BLAST vs. Clustal Omega ?!
clustal-omega blast
updated 16 months ago by 40k • written 8.6 years ago by ▴ 270
51
votes
24
replies
8.7k
views
7 follow
Forum: Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 21 months ago by 40k • written 9.1 years ago by ★ 5.2k
34
votes
11
replies
8.6k
views
13 follow
Forum: Gallery: Computational tools for DNA methylation
computational-tools methylation
updated 13 months ago by 40k • written 7.9 years ago by ★ 9.3k
88
votes
32
replies
8.6k
views
11 follow
Forum: Vintage / unconventional pictures for Bioinformatics
history picture
updated 18 months ago by 40k • written 8.9 years ago by 157k
50
votes
4
replies
8.6k
views
Forum: How to add images to a Biostars post
how-to
7 months ago by Ram 40k
79
votes
35
replies
8.6k
views
17 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
authorship career
updated 4 months ago by • 0 • written 7.9 years ago by ▴ 650
22
votes
14
replies
8.6k
views
6 follow
Forum: Too late to switch to Bioinformatics?
education career
updated 6 months ago by 40k • written 9.3 years ago by ▴ 30
244
votes
36
replies
8.5k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Analyst Scientist
updated 5 months ago by 40k • written 7.4 years ago by ★ 9.3k
21
votes
17
replies
8.5k
views
7 follow
Forum: In YOUR personal opinion, who are the top 5 bioinformatics researchers in NGS in 21st century?
next-gen
updated 5 months ago by 40k • written 6.7 years ago by ▴ 10
12
votes
4
replies
8.4k
views
Forum: Bioinformatics/Biotech Firms In India
career
updated 7 months ago by 40k • written 11.4 years ago by ▴ 100
27
votes
21
replies
8.4k
views
9 follow
Forum: Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science phd
updated 5 months ago by 40k • written 7.0 years ago by ★ 1.6k
99
votes
21
replies
8.3k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
bioinformatics
updated 7 months ago by 40k • written 10.7 years ago by ▴ 370
9
votes
4
replies
8.3k
views
Forum: Biofinysics - How does bowtie2 assign MAPQ scores?
alignment bowtie2
updated 6 months ago by 40k • written 9.1 years ago by 7.9k
10
votes
3
replies
8.2k
views
Forum: Got Multiple Cpus? Activate Them With Gnu Parallel
parallel command-line ngs
updated 7 months ago by 40k • written 9.8 years ago by ★ 4.3k
9
votes
19
replies
8.2k
views
Forum: Careful!! Velvet Generates Different Assemblies From The Same Input Data And Same Input Parameters With Openmp Enabled.
velvet genome
updated 7 months ago by 40k • written 9.9 years ago by ▴ 650
13
votes
5
replies
8.1k
views
Forum: Funding Opportunities In Bioinformatics
grant
updated 7 months ago by 40k • written 10.6 years ago by 20k
46
votes
9
replies
8.1k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 7 months ago by 40k • written 9.8 years ago by ▴ 140
30
votes
19
replies
8.1k
views
6 follow
Forum: Programming language use distribution from recent programs / articles
programming-language programs
updated 4 months ago by 40k • written 6.4 years ago by 11k
64
votes
8
replies
8.0k
views
7 follow
Forum: Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 7 months ago by 40k • written 10.4 years ago by 20k
4
votes
6
replies
7.9k
views
Forum: TCGA: How to tell if the data is exome or WGS?
wgs mutations tcga exome
updated 12 months ago by 40k • written 8.1 years ago by ▴ 110
26
votes
0
replies
7.9k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 6 months ago by 40k • written 9.0 years ago by 98k
145
votes
56
replies
7.9k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostars
updated 7 months ago by 40k • written 10.5 years ago by 98k
47
votes
37
replies
7.9k
views
12 follow
Forum: The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 7 months ago by 40k • written 10.1 years ago by 2.3k
19
votes
9
replies
7.9k
views
6 follow
Forum: How to support bioinformatics tools via Biostars: prefill and watch tags, reply via email
biostars
updated 7 months ago by 40k • written 9.4 years ago by 98k
1,000 results • Page 2 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Recent Awards • All
Teacher to benformatics 3.8k
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Recent Replies
Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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