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Limit : this year
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414 results • Page
4 of 9
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Views
Votes
Replies
0
votes
0
replies
833
views
Forum:
Annotation for WGBS
next-gen
updated 11 months ago by
Ram
43k • written 4.0 years ago by
veronico
▴ 70
7
votes
9
replies
1.1k
views
Forum:
DEG analysis when not replicates are available
NOISeq
RNA-Seq
edgeR
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Antonio R. Franco
★ 5.1k
5
votes
5
replies
941
views
Forum:
What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by
Ram
43k • written 4.1 years ago by
zizigolu
★ 4.3k
2
votes
6
replies
1.2k
views
Forum:
Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq
database
gene
prot
updated 11 months ago by
Ram
43k • written 4.1 years ago by
rtviii
• 0
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Mozart
▴ 330
2
votes
4
replies
1.3k
views
Forum:
Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq
sequencing
updated 11 months ago by
Ram
43k • written 4.1 years ago by
ian.folkert
▴ 10
7
votes
5
replies
956
views
Forum:
scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Diedes
▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 11 months ago by
Ram
43k • written 4.1 years ago by
scolobs
• 0
29
votes
18
replies
2.7k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by
Ram
43k • written 4.2 years ago by
t4192
▴ 20
6
votes
5
replies
1.1k
views
Forum:
A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by
Ram
43k • written 4.2 years ago by
wangdp123
▴ 340
5
votes
6
replies
1.1k
views
Forum:
COVID19 testing - can we/should we use NGS?
NGS
covid19
diagnostics
updated 11 months ago by
Ram
43k • written 4.2 years ago by
liorglic
★ 1.4k
6
votes
5
replies
7.8k
views
Forum:
Converting GFF to GTF
GTF
GFF
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Juke34
8.6k
4
votes
5
replies
1.1k
views
Forum:
A silly question about journal clubs
journal-club
challenge
updated 11 months ago by
Ram
43k • written 4.2 years ago by
flogin
▴ 280
31
votes
41
replies
2.7k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 11 months ago by
Ram
43k • written 4.2 years ago by
K.Gee
▴ 40
11
votes
5
replies
6.5k
views
Forum:
Slurm, Son of Grid Engine, Mesos, and Hadoop YARN vs HTCondor and Torque
PBS
HPC
SDSC
Torque
updated 11 months ago by
Ram
43k • written 5.8 years ago by
Shicheng Guo
★ 9.4k
10
votes
6
replies
1.3k
views
6 follow
Forum:
Pros and cons to do biomedical research in pharmaceutical company
industry
career
academia
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Shicheng Guo
★ 9.4k
6
votes
4
replies
2.5k
views
Forum:
Ru/Read Until in Nanopore sequencers
Oxford-Nanopore
alignment
sequencing
updated 11 months ago by
Ram
43k • written 4.2 years ago by
jean.elbers
★ 1.7k
6
votes
5
replies
13k
views
Forum:
Single-end sequencing versus paired-end
Assembly
snp
sequencing
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Sujata
▴ 20
6
votes
5
replies
1.9k
views
Forum:
Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by
Ram
43k • written 4.3 years ago by
melissachua90
▴ 70
2
votes
0
replies
1.1k
views
Forum:
How to Fairly Represent and Interpret Direct-To-Consumer Ancestry Results?
Ancestry
chromosome-painting
ADMIXTURE
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Charles Warden
8.2k
4
votes
2
replies
2.2k
views
Forum:
wet-lab vs dry-lab scientists
cv
language
updated 11 months ago by
Ram
43k • written 4.3 years ago by
igor
13k
6
votes
15
replies
1.7k
views
Forum:
PhD Bioinformatics on GWAS
SNP
GWAS
genome
PHD
updated 11 months ago by
Ram
43k • written 4.3 years ago by
davidenoma
▴ 50
7
votes
2
replies
793
views
Forum:
How to follow a particular post on Biostars?
meta
updated 11 months ago by
Ram
43k • written 4.5 years ago by
natasha.sernova
★ 4.0k
7
votes
4
replies
1.5k
views
Forum:
Studying for a Bioinformatics degree
sequence
R
next-gen
gene
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.3 years ago by
O'kin-1
▴ 20
2
votes
2
replies
748
views
Forum:
Learning RNASeq Analysis using my own DATA that needs to be analyzed
assembly
gene
RNA-Seq
alignment
updated 11 months ago by
Ram
43k • written 4.3 years ago by
Nattoh Godfrey
• 0
14
votes
11
replies
6.8k
views
7 follow
Forum:
Do you need a deduplication tool for FASTQ data in fastp?
deduplication
fastp
updated 11 months ago by
Ram
43k • written 5.0 years ago by
chen
★ 2.5k
2
votes
2
replies
947
views
Forum:
How can bench biologists transition to be bioinformatics scientist?
transition
career
biology
updated 11 months ago by
Ram
43k • written 4.4 years ago by
seahym
▴ 10
0
votes
0
replies
542
views
Forum:
Transmart/i2b2 versus PhenoMeNal
transmart
PhenoMeNal
updated 11 months ago by
Ram
43k • written 4.4 years ago by
mike.rightmire
• 0
2
votes
6
replies
1.0k
views
Forum:
Error in posting to Biostars?
meta
updated 11 months ago by
Ram
43k • written 4.4 years ago by
vctrm67
▴ 60
1
vote
8
replies
5.4k
views
Forum:
Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by
Ram
43k • written 4.4 years ago by
cduukj
• 0
6
votes
5
replies
1.4k
views
7 follow
Forum:
What do you think of sci-hub?
sci-hub
updated 11 months ago by
Ram
43k • written 4.4 years ago by
cduukj
• 0
1
vote
0
replies
829
views
Forum:
Call for clinical bioinformaticians who work with humans (discussion) - germline genome analysis
genetics-tests
updated 11 months ago by
Ram
43k • written 4.4 years ago by
German.M.Demidov
★ 2.9k
4
votes
4
replies
1.1k
views
Forum:
Kubernetes in Production?
ci-cd
webservice
kubernetes
docker
updated 11 months ago by
Ram
43k • written 4.4 years ago by
acamukhin
• 0
22
votes
12
replies
1.8k
views
6 follow
Forum:
What were the most impactful Bioinformatics papers published this year
papers
publications
updated 11 months ago by
Ram
43k • written 4.4 years ago by
c_u
▴ 520
4
votes
6
replies
2.9k
views
Forum:
NGS Data Storage Best Practices (Clinical)
NGS
clinical
storage
updated 11 months ago by
Ram
43k • written 4.4 years ago by
Robert Sicko
▴ 630
134
votes
65
replies
6.2k
views
11 follow
Forum:
Bioinformatics vs. the Climate Crisis
RNA-Seq
Climate
updated 11 months ago by
Ram
43k • written 4.4 years ago by
sviatoslav.kendall
▴ 880
7
votes
6
replies
1.8k
views
Forum:
Bioinformaticians - Am I on the Right Track?
Career
updated 11 months ago by
Ram
43k • written 4.4 years ago by
kstangline
▴ 80
7
votes
8
replies
1.3k
views
Forum:
Guidelines / Limits for Shared Bioinformatics Support
Core
Shared-Resources
Collaboration
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Charles Warden
8.2k
8
votes
7
replies
1.4k
views
Forum:
Is it okay to pool sample for RNAseq and proteomics study?
RNA-Seq
updated 11 months ago by
Ram
43k • written 4.5 years ago by
sha_6p
▴ 10
11
votes
7
replies
6.6k
views
Forum:
Using Graphics Processing Units (GPUs) in bioinformatics
algorithm
GPU
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Denis
▴ 310
6
votes
5
replies
960
views
Forum:
Tips on: How to organise data on servers
genotype
warehouse
servers
updated 11 months ago by
Ram
43k • written 4.5 years ago by
flight505
▴ 110
12
votes
0
replies
2.0k
views
Forum:
Free Bioinformatics Courses(Curriculum)
ossu
course
Curriculum
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Leite
★ 1.3k
31
votes
16
replies
2.2k
views
8 follow
Forum:
What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing
assembly
genome
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Antonio R. Franco
★ 5.1k
0
votes
0
replies
144
views
Forum:
IITM-EBI modelling workshop
ebi
iit-madras
biomodelling
updated 11 months ago by
Ram
43k • written 4.6 years ago by
philgev2
▴ 10
4
votes
0
replies
908
views
Forum:
Help make UMI-tools even better - take our survey
Survey
UMI
UMI-Tools
updated 11 months ago by
Ram
43k • written 4.6 years ago by
i.sudbery
19k
34
votes
8
replies
2.7k
views
9 follow
Forum:
Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv
industry
career
updated 11 months ago by
Ram
43k • written 4.6 years ago by
'
▴ 300
4
votes
3
replies
924
views
Forum:
When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by
Ram
43k • written 4.7 years ago by
microfuge
★ 1.9k
4
votes
12
replies
1.5k
views
Forum:
publicly available data
arrayexpress
GEO
SRA
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Konstantinos Yeles
▴ 110
3
votes
8
replies
3.5k
views
6 follow
Forum:
SSD or HHD for genome analysis
hardware
genome
sequencing
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Neil
▴ 20
2
votes
7
replies
1.2k
views
Forum:
Future prospects: NGS vs Gene editing (using CRISPR CAS9, AAVs and similar methods)
NGS
CRISPR-Cas9
updated 11 months ago by
Ram
43k • written 4.6 years ago by
Gabriel
▴ 170
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Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
by
Juke34
8.6k
Right I heard there is an issue since Perl v5.36. You may have better luck using conda. Or the best way is to use the container. Or downgra…
Answer: Alphaphold 3 pLDDT coloring scheme in chimerax?
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★ 27k
pLDDT scores are stored in the so-called B-factor column in PDB files. Below the `File` ribbon select `Molecule Display` and click on `b-fa…
Comment: Genome Visualization Tools
by
dlera.lozano
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Thank you so much
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Depends on the context. `TE detection` and `TE identification` could mean the same thing if they refer to presence/absence of TEs. `TE iden…
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Ram
43k
Please accept your own answer to mark the post as solved.
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Ram
43k
A small educational note: if an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accep…
Comment: RSeQC : infer_experiment.py Error: Could not retrieve index file
by
Prawesh
• 0
thanks, it's working now.
Answer: Genome Visualization Tools
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GenoMax
142k
@cmdcolin has a great list here: https://github.com/cmdcolin/awesome-genome-visualization
Answer: RSeQC : infer_experiment.py Error: Could not retrieve index file
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You need to have indexed your bam/sam file using `samtools index`
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jared.andrews07
★ 16k
The simple answer is to plot it natively with plotly rather than use `ggplotly`. See [this stackoverflow answer](https://stackoverflow.com/…
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GenoMax
142k
According to HUGO there is only one [**ZSCAN2 gene**][1] and it points to the first Ensembl gene ID (ENSG00000176371). Ensembl is annotatin…
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There are many tools for this. I recommend [gatk (picard) CollectRnaSeqMetrics][1] or alternatively [RSeQC][2] and then run [multiqc][3…
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Hi, I emailed them and did get the bed file! Thank you so much.
Comment: Where to get the following bed file?
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Thanks! Super helpful.
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1. Imputation algorithms will output log files indicating, among other things, accuracy of imputation. We can't comment on specifics as we …
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