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1.2k
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205
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47k
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107 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 13 days ago by ▴ 240 • written 11.8 years ago by 21k
361
votes
57
replies
57k
views
43 follow
Forum: Recommend Your Favorite Bioinformatics Books
books education
updated 4 months ago by 84k • written 12.9 years ago by 96k
306
votes
65
replies
19k
views
48 follow
Forum: Your Favorite Bioinformatics Blogs (March 2010)
subjective
updated 4 months ago by 84k • written 12.9 years ago by 27k
292
votes
27
replies
41k
views
33 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing papers
updated 6 months ago by 37k • written 7.0 years ago by ★ 2.4k
290
votes
55
replies
14k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 8 weeks ago by 37k • written 9.7 years ago by 9.5k
284
votes
64
replies
17k
views
44 follow
Forum: Bioinformatics "Cheat Sheet"
cheat sheet
updated 4 months ago by 84k • written 11.9 years ago by 22k
279
votes
69
replies
17k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective Forum
updated 8 weeks ago by 37k • written 11.5 years ago by ▴ 160
261
votes
47
replies
20k
views
35 follow
Forum: Bioinformatics courses, workshops or training
Workshop Training Courses
updated 27 days ago by 37k • written 7.7 years ago by ★ 4.2k
251
votes
36
replies
30k
views
27 follow
Forum: How Do You Manage Your Files & Directories For Your Projects ?
file
updated 4 months ago by 84k • written 12.8 years ago by 152k
244
votes
36
replies
7.7k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Habit Analyst Scientist Forum
6.0 years ago by Shicheng Guo ★ 9.2k
205
votes
58
replies
38k
views
31 follow
Forum: Will Python Take The Place Of R?
biopython statistics r python Forum
updated 5 hours ago by 37k • written 9.7 years ago by 9.5k
202
votes
41
replies
23k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics cram gatk galaxy
updated 10 months ago by 37k • written 8.2 years ago by ★ 5.1k
160
votes
22
replies
16k
views
19 follow
Forum: Advice For Newcomers To The Bioinformatics Field
advice career
updated 12 weeks ago by 37k • written 9.6 years ago by 9.5k
159
votes
38
replies
14k
views
22 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
bioinformatics Forum humor
updated 4 months ago by ▴ 30 • written 9.8 years ago by 96k
151
votes
39
replies
22k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics Forum
updated 5.3 years ago by 84k • written 10.0 years ago by 3.0k
145
votes
56
replies
7.3k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostar Forum
updated 9.7 years ago by 49k • written 9.8 years ago by 96k
144
votes
62
replies
9.2k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
biostar meta statistics Forum
updated 5.6 years ago by 52k • written 11.9 years ago by ★ 2.9k
136
votes
41
replies
20k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Forum
updated 9.3 years ago by ★ 1.1k • written 9.6 years ago by ★ 1.6k
134
votes
65
replies
3.3k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate Forum
updated 12 months ago by 52k • written 3.2 years ago by ▴ 840
129
votes
38
replies
5.4k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics Forum
updated 3.8 years ago by 34k • written 3.8 years ago by 96k
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 6.4 years ago by ▴ 910
124
votes
46
replies
42k
views
20 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 18 months ago by ★ 2.3k • written 6.9 years ago by ★ 3.2k
116
votes
35
replies
6.9k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
biostar Forum core
updated 3.8 years ago by 13k • written 9.8 years ago by 21k
116
votes
31
replies
35k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 7 months ago by 37k • written 9.4 years ago by 11k
113
votes
53
replies
4.7k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
career development authorship Forum
updated 3.8 years ago by ▴ 270 • written 3.8 years ago by ▴ 170
113
votes
34
replies
35k
views
18 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 3.5 years ago by ★ 9.2k • written 5.6 years ago by ▴ 760
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics Forum
written 9.0 years ago by ▴ 570
105
votes
46
replies
11k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
Forum
written 9.4 years ago by ★ 1.1k
99
votes
21
replies
7.8k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
Forum
updated 8.7 years ago by 3.5k • written 10.0 years ago by ▴ 370
99
votes
36
replies
26k
views
32 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 7 days ago by 21k • written 9.2 years ago by ★ 3.6k
98
votes
41
replies
4.3k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software error sequencing next-gen Forum
updated 6.4 years ago by 96k • written 6.4 years ago by ▴ 500
93
votes
50
replies
14k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
Forum
updated 9.2 years ago by ▴ 370 • written 9.2 years ago by 96k
91
votes
20
replies
18k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
N-of-one WGS RNA-Seq next-gen Exome
updated 3 months ago by 37k • written 8.7 years ago by 20k
88
votes
32
replies
8.0k
views
11 follow
Forum: Vintage / unconventional pictures for Bioinformatics
history picture
updated 10 months ago by 37k • written 8.3 years ago by 152k
88
votes
24
replies
4.6k
views
10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostar Forum
9.9 years ago by aidan-budd 1.9k
86
votes
29
replies
8.4k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EBI EU politics Forum brexit
6.6 years ago by Michael Dondrup 52k
84
votes
36
replies
16k
views
13 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS-mapper
updated 10 months ago by 37k • written 8.1 years ago by 9.8k
84
votes
22
replies
3.4k
views
12 follow
Forum: is fortran still used in bioinformatics?
R FORTAN Forum
updated 2.2 years ago by 68k • written 3.6 years ago by ▴ 180
83
votes
30
replies
5.4k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
design lab-space
updated 7 months ago by 37k • written 7.8 years ago by 18k
82
votes
32
replies
6.3k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
Forum
updated 10.2 years ago by ★ 4.0k • written 10.2 years ago by ★ 3.6k
81
votes
21
replies
4.0k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
beginner help
updated 5 months ago by 37k • written 6.6 years ago by ★ 3.2k
80
votes
34
replies
3.9k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 26 days ago by 37k • written 7.7 years ago by ▴ 500
80
votes
23
replies
4.2k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
training jobs salary
updated 12 months ago by 37k • written 8.2 years ago by ★ 3.0k
79
votes
34
replies
7.5k
views
15 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
career authorship Forum
updated 7.2 years ago by ★ 4.6k • written 7.2 years ago by ▴ 640
78
votes
31
replies
5.6k
views
14 follow
Forum: Do Bad Questions Even Exist?
general biostar education Forum
updated 9.2 years ago by 52k • written 11.9 years ago by 10k
74
votes
14
replies
27k
views
12 follow
Forum: Bioinformatics Consulting Thoughts
consulting
updated 7 months ago by 37k • written 12.6 years ago by 4.5k
72
votes
18
replies
6.6k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books Forum
updated 3 months ago by 37k • written 9.6 years ago by 7.7k
72
votes
28
replies
5.1k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
commercial-services ethics misconduct
updated 7 months ago by 37k • written 8.0 years ago by ▴ 90
72
votes
14
replies
3.1k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice forum Forum
updated 2.4 years ago by 7.7k • written 2.4 years ago by ★ 14k
70
votes
19
replies
4.4k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
computational-analysis
updated 6 months ago by 37k • written 7.3 years ago by ▴ 170
1,000 results • Page 1 of 20
Recent Votes
Answer: Looking for a tool which provides mapping quality score distributions from BAM f
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
Answer: Gviz python alternative
Answer: Gviz python alternative
Answer: Annotating snps with gene information
Comment: Plotting Correlation matrix
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Recent Replies
Answer: Can someone help me search the minimal value of a two column csv file with a sin by seidel 10k
You want the minimum value of the second column of a csv file? You could use `sort` like so: cat foo.txt 0.24380519999999706,4…
Answer: Python Dictionary of Primer3-py Primer Designs by barslmn ★ 1.2k
You're so close. You can simply loop over sequence dictionaries like you did with the `design_output` and check if the keys with `startswit…
Comment: Unable to install clusterProfiler on Mac M1 by GenoMax 125k
Have you installed `Xcode` and the command line tools that go with? If not you will need to install those.
Answer: SRA taxonomy analysis by Steve • 0
Thanks @genomax I created an aws glue crawler to pull the data from s3://sra-pub-metadata-us-east-1/sra_tax_analysis_tool/ I wonder if it …
Comment: mirbase does not have miRNA annotation of my species, what are the alternatives? by demoraesdiogo2017 ▴ 80
thanks! however, shouldn't it also have a gtf/gff file with the annotations?
Comment: Getting a VCF file from plink .bed, .fam and .bim files by hi.there • 0
Thanks Ram. Yes. I have read all of this documentation before. --file and --bfile. I have actually tried doing the complete liftover be…
Answer: SRA taxonomy analysis by GenoMax 125k
This data may only be available using `BigQuery` for [**SRA in cloud**][1]. For more information on querying: https://www.ncbi.nlm.nih.g…
Comment: MesKit error message - Join columns must be present in data. by CH1374 • 0
column names for the maf are: [1] "Hugo_Symbol" "Chromosome" "Start_Position" [4] "End_Position" "Variant_Classification" "Variant_Type" [7…
Answer: scaffold assembly inro chromosomal assembly using reference genome by samuel.a.odonnell ▴ 450
Have a look at ragtag and ragout. I use ragout for smaller assemblies (~20 Mb and less) and ragtag for larger genomes.
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Ram 37k
I've been meaning to work on a Biostars-specific code formatting manual for a while now but the basic is pretty simple: You can use backtic…
Comment: Multiline Fasta To Single Line Fasta by Onur • 0
Thank you it's also worked for me too. Best,
Comment: CompressedGRangesList don't have seqLengths: BiocParallel errors: Error in covRl by Estefania ▴ 10
Thanks Ram. Could you point to a manual on how to make the post look like yours? I just copy-pasted my R script and this is how it shows in…
Comment: extracting input files form Seurat by rasing02 • 0
Thank you jared.andrews07
Comment: extracting input files form Seurat by rasing02 • 0
Yes, I just need the input data so that investigators can use tools other than R to visualize the data in form of viloin plots or feature p…
Comment: Downloading 450k methylation data from GEO by GenoMax 125k
I don't think they have provided processed data as a single upload.
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