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Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software Forum
updated 10 weeks ago by ▴ 830 • written 10.3 years ago by 20k
290
votes
55
replies
11k
views
41 follow
Forum: What Do You Waste Your Time On
scripting
updated 4 weeks ago by 34k • written 8.2 years ago by 8.6k
279
votes
69
replies
16k
views
23 follow
Forum: Is Bioinformatics On Decline? Only In The Web, Or Also Within Institutions?
subjective Forum
updated 6.1 years ago by ▴ 10 • written 10.0 years ago by ▴ 160
276
votes
26
replies
35k
views
31 follow
Forum: Up-to-date RNA-Seq Analysis Training/Courses/Papers (Dec 2017)
RNA-Seq sequencing Forum papers Tutorial
3.6 years ago by CandiceChuDVM ★ 2.2k
258
votes
47
replies
17k
views
35 follow
Forum: Bioinformatics courses, workshops or training
Training Workshop Tutorial Courses Forum
3.2 years ago by Deepak Tanwar ★ 4.1k
243
votes
36
replies
6.7k
views
32 follow
Forum: Good Habit for Bioinformatics Analyst or Scientist
Habit Analyst Scientist Forum
4.5 years ago by Shicheng Guo ★ 8.7k
202
votes
41
replies
21k
views
20 follow
Forum: Genomics is not Special. Computational Biologists are reinventing the wheel for big data biology analysis
genomics Forum cram gatk galaxy
updated 6.7 years ago by 88k • written 6.7 years ago by ★ 4.9k
201
votes
55
replies
35k
views
30 follow
Forum: Will Python Take The Place Of R?
r python biopython statistics Forum
updated 3.7 years ago by ★ 11k • written 8.2 years ago by 8.9k
187
votes
89
replies
12k
views
25 follow
Forum: Petition to demand that the Federal German Government release all genomic data on SARS-COV-2
GISAID Forum
updated 26 days ago by ▴ 40 • written 16 months ago by 88k
156
votes
21
replies
14k
views
17 follow
Forum: Advice For Newcomers To The Bioinformatics Field
bioinformatics Forum
updated 3.0 years ago by • 0 • written 8.1 years ago by 8.9k
150
votes
39
replies
20k
views
20 follow
Forum: A Farewell To Bioinformatics
bioinformatics Forum
updated 3.8 years ago by 75k • written 8.5 years ago by 3.0k
145
votes
56
replies
6.6k
views
17 follow
Forum: Suggesting The Removal Of Post Closing
biostar Forum
updated 8.2 years ago by 49k • written 8.3 years ago by 88k
144
votes
62
replies
8.0k
views
23 follow
Forum: Is The Biostar Fading? (Updated For 2014)
biostar meta statistics Forum
updated 4.1 years ago by 49k • written 10.4 years ago by ★ 2.9k
142
votes
35
replies
11k
views
20 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
bioinformatics Forum humor
updated 5.8 years ago by • 0 • written 8.3 years ago by 88k
135
votes
41
replies
18k
views
20 follow
Forum: Are We Rude/Do We Expect Too Much From People Asking Questions On This Forum?
Forum
updated 7.8 years ago by ★ 1.1k • written 8.1 years ago by ★ 1.5k
130
votes
65
replies
1.9k
views
11 follow
Forum: Bioinformatics vs. the Climate Crisis
RNA-Seq Climate Forum
updated 20 months ago by 19k • written 20 months ago by ▴ 790
129
votes
38
replies
3.6k
views
21 follow
Forum: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
bioinformatics Forum
updated 2.3 years ago by 33k • written 2.3 years ago by 88k
121
votes
44
replies
22k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
RNA-Seq NGS adapter Forum
written 4.9 years ago by ▴ 780
120
votes
45
replies
35k
views
19 follow
Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
ChIP-Seq visualization deeptools ngsplot homer Forum
updated 19 months ago by ▴ 230 • written 5.4 years ago by ★ 3.1k
116
votes
35
replies
5.9k
views
18 follow
Forum: Is Biostar Killing The Bioinformatics Core?
biostar Forum core
updated 2.3 years ago by 12k • written 8.3 years ago by 20k
114
votes
31
replies
32k
views
24 follow
Forum: Where To Look For Quality Bioinformatics Short Courses And Workshops?
Courses
updated 4 weeks ago by 34k • written 7.9 years ago by 11k
113
votes
53
replies
3.2k
views
16 follow
Forum: Middle author, but not first author projects. How would you approach this?
career development authorship Forum
updated 2.3 years ago by ▴ 270 • written 2.3 years ago by ▴ 170
105
votes
46
replies
9.5k
views
13 follow
Forum: Why Does Biostar Cover Questions On Epigenetics, But Not Intelligent Design?
Forum
written 7.9 years ago by ★ 1.1k
99
votes
21
replies
7.0k
views
14 follow
Forum: How Has Bioinformatics Improved Over Time?
Forum
updated 7.2 years ago by 3.4k • written 8.5 years ago by ▴ 370
99
votes
34
replies
22k
views
30 follow
Forum: List of cloud genomics companies
cloud genomics Forum
updated 10 weeks ago by 20k • written 7.7 years ago by ★ 3.5k
98
votes
41
replies
3.3k
views
17 follow
Forum: I am really pissed off by the bioinformatics software world. Do/can we have a better solution?
software error sequencing next-gen Forum
updated 4.9 years ago by 88k • written 4.9 years ago by ▴ 480
95
votes
34
replies
23k
views
18 follow
Forum: Snakemake vs. Nextflow: strengths and weaknesses
snakemake nextflow Forum
updated 23 months ago by ★ 8.7k • written 4.1 years ago by ▴ 710
93
votes
50
replies
13k
views
17 follow
Forum: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To Be Discontinued
Forum
updated 7.6 years ago by ▴ 350 • written 7.7 years ago by 88k
91
votes
20
replies
17k
views
15 follow
Forum: Publications for individualized medicine in cancer by whole genome, exome or transcriptome sequencing
RNA-Seq next-gen WGS Exome N-of-one Forum
3.9 years ago by Obi Griffith 19k
89
votes
23
replies
17k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics Forum
written 7.5 years ago by ▴ 490
88
votes
32
replies
6.8k
views
11 follow
Forum: Vintage / unconventional pictures for Bioinformatics
picture history Forum
3.4 years ago by Pierre Lindenbaum 137k
88
votes
24
replies
4.2k
views
10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostar Forum
8.4 years ago by aidan-budd 1.9k
86
votes
29
replies
7.1k
views
9 follow
Forum: What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EBI EU politics Forum brexit
5.1 years ago by Michael Dondrup 49k
84
votes
26
replies
2.3k
views
12 follow
Forum: is fortran still used in bioinformatics?
R FORTAN Forum
updated 7 months ago by 52k • written 2.1 years ago by ▴ 180
83
votes
30
replies
4.3k
views
18 follow
Forum: Optimal design for bioinformatics "lab" space?
lab space design Forum
updated 6.3 years ago by ★ 2.3k • written 6.3 years ago by 18k
82
votes
32
replies
5.1k
views
13 follow
Forum: Shall We Go Back To Stackexchange?
Forum
updated 8.7 years ago by ★ 4.0k • written 8.7 years ago by ★ 3.5k
81
votes
34
replies
14k
views
11 follow
Forum: Benchmark - Comparison of Different NGS Mappers
mRNA-Seq benchmark NGS mapper News Forum
6.6 years ago by David Langenberger 9.6k
81
votes
21
replies
3.4k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
beginner new scared help Forum
updated 5.1 years ago by 16k • written 5.1 years ago by ★ 3.1k
80
votes
34
replies
3.1k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship Forum
updated 6.2 years ago by ▴ 50 • written 6.2 years ago by ▴ 460
80
votes
23
replies
3.6k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
jobs training salary Forum
updated 6.3 years ago by ▴ 190 • written 6.7 years ago by ★ 3.0k
78
votes
31
replies
4.9k
views
14 follow
Forum: Do Bad Questions Even Exist?
general biostar education Forum
updated 7.7 years ago by 49k • written 10.4 years ago by 10k
78
votes
34
replies
6.4k
views
15 follow
Forum: Do bioinformaticians often break molecular biologists' hearts by being the first author?
career authorship Forum
updated 5.7 years ago by ★ 4.4k • written 5.7 years ago by ▴ 640
72
votes
14
replies
1.8k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice forum Forum
updated 10 months ago by 7.1k • written 10 months ago by ★ 11k
72
votes
18
replies
5.8k
views
17 follow
Forum: What Is One Book Every Bioinformatician Should Read?
books Forum
updated 6.0 years ago by ▴ 200 • written 8.1 years ago by 7.1k
71
votes
28
replies
4.4k
views
10 follow
Forum: Bioinformatics commercial services as a risk factor for scientific misconduct
ethics misconduct commercial services Forum
updated 6.5 years ago by 33k • written 6.5 years ago by ▴ 90
70
votes
19
replies
3.6k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
analysis Forum computational bioinformatics Latest
updated 3 months ago by 34k • written 5.8 years ago by ▴ 170
69
votes
39
replies
2.5k
views
14 follow
Forum: Preparation for Bioinformatics.SE closing
biostars Forum
updated 4.2 years ago by ▴ 740 • written 4.2 years ago by 13k
67
votes
40
replies
6.9k
views
12 follow
Forum: I want to re-open the old debate: python or perl ?
perl python Forum
updated 6.7 years ago by 18k • written 6.7 years ago by ★ 2.8k
66
votes
48
replies
5.7k
views
16 follow
Forum: Stranger Things: unexpected limitations of popular tools
samtools hisat2 errors Forum
updated 3.8 years ago by ★ 2.7k • written 4.0 years ago by 88k
66
votes
21
replies
4.2k
views
18 follow
Forum: Is there anyone who was a pure biologist?
next-gen Forum
updated 23 months ago by 34k • written 7.3 years ago by ▴ 100
1,000 results • Page 1 of 20
Recent Votes
Enhanced Volcano removal of labels
A: Enhanced Volcano removal of labels
Answer: What does that dip in the density plot mean from a single cell data analysis?
Comment: What does that dip in the density plot mean from a single cell data analysis?
Answer: What does that dip in the density plot mean from a single cell data analysis?
Answer: Which method is the best for using in "dba.count" in Diffbind R package
Answer: Which method is the best for using in "dba.count" in Diffbind R package
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Recent Replies
Answer: use a list of id to extract sequence from different genomics by Pierre Lindenbaum 137k
[linearize][1] and extract the ID at the same time, sort both list, join, restore the fasta: join -t $'\t' -1 1 -2 1 \ <…
Comment: use a list of id to extract sequence from different genomics by LZH289 • 0
thank you!
Comment: What does betaPrior do in DESEQ? by i.sudbery 12k
Those DE genes - is that after a log fold change cut off?
Comment: How to filter VEP results of "missing values" by Yiming • 0
Thank you so much! I found an error with my code. And this works: filter_vep -i VEP_annotated.vcf -o VEP_filtered.vcf --format vcf --fo…
Comment: use a list of id to extract sequence from different genomics by GenoMax 104k
Please use the formatting bar (especially the `code` option) to present your post better. I've done it for you this time. <br /> <img src="…
Comment: gnomaAD exome and genome AF differences by humzakhan340 • 0
The point that genomes are much larger and more computationally intensive to work with is well-taken. However, promoter information is not…
Comment: ERROR [mem_sam_pe] paired reads have different names -- during binning in metaW by swbarnes2 10k
Do you understand what the problem is? Have you figured out which step introduced it?
Comment: gene expression of specifics gene by Bioinformatics1 • 0
Thanks Hyper-Odin
Comment: inquiry related to snpsift by rheab1230 • 0
I have one question related to earlier step where you are formating the .vcf file. You are removing white space and removing format tags ex…
Comment: inquiry related to snpsift by rheab1230 • 0
Hey Kevin, its working now. Earlier I use conda to install the software. But that is not working. So I went to bcftools site and downloaded…
Comment: What does that dip in the density plot mean from a single cell data analysis? by m.sadman.sakib ▴ 100
Thank you very much for the great explanation! Really appreciate it!
Comment: Which method is the best for using in "dba.count" in Diffbind R package by m.sadman.sakib ▴ 100
Thank you very much, Rory!
Comment: How to merge folders that have similar (not the same) names, in a folder keeping by cpad0112 16k
**Before** ``` $ tree . . ├── 123_S1_R1_001 │   └── 123_S1_R1_001.fastq.gz ├── 123_S1_R2_001 │   └── 123_S1_R2_001.fastq.gz ├── 456_S25_R1…
Comment: SNP density plot of aedes genome using bed file by Hamid Ghaedi ★ 1.7k
There is no figure to look at that!
Comment: How to filter VEP results of "missing values" by GenoMax 104k
Looking at the [examples of filters on this page][1] something to try `--filter "LoF_filter not exists"`or `--filter "not LoF_filter`? …
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