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1,000 results • Page 4 of 20
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33
votes
17
replies
3.5k
views
7 follow
Forum: What bioinformatics tools/software do not get enough recognition?
software
updated 13 months ago by 43k • written 9.5 years ago by 24k
33
votes
5
replies
16k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 21 months ago by 43k • written 8.3 years ago by ▴ 620
32
votes
16
replies
12k
views
9 follow
Forum: How to switch from bench research to computational biology?
career
updated 22 months ago by 43k • written 9.1 years ago by ▴ 70
32
votes
9
replies
5.8k
views
Forum: Embrace The Non-Googlers Of Biostars
meta biostars
updated 14 months ago by 43k • written 10.8 years ago by ★ 4.1k
32
votes
5
replies
5.6k
views
Forum: ipython notebooks on bioinformatics and genomics
python
updated 13 months ago by 43k • written 8.8 years ago by ★ 2.1k
32
votes
14
replies
6.8k
views
9 follow
Forum: Pat Schloss of Mothur uses this
uses-this
updated 13 months ago by 43k • written 9.5 years ago by 100k
32
votes
13
replies
11k
views
10 follow
Forum: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
genomics phd
updated 14 months ago by 43k • written 11.8 years ago by ▴ 650
31
votes
13
replies
16k
views
8 follow
Forum: Should I Pursue A Bioinformatics Msc?
career
updated 14 months ago by 43k • written 11.2 years ago by ▴ 70
31
votes
12
replies
1.0k
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
8 weeks ago by karlaarz ▴ 90
31
votes
4
replies
5.6k
views
8 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
Assembly sequencing RNA-Seq
updated 12 months ago by 43k • written 7.3 years ago by ★ 2.8k
31
votes
16
replies
2.2k
views
8 follow
Forum: What is in your opinion the current state-of-the-art sequencing platform for genomic assembly (Nov 2019)
next-gen-sequencing assembly genome
updated 11 months ago by 43k • written 4.5 years ago by ★ 5.1k
31
votes
7
replies
6.0k
views
9 follow
Forum: Beginner in Bioinformatics / computational biology field
Bioinformatics Computational-biology
updated 13 months ago by 43k • written 7.9 years ago by ▴ 70
31
votes
34
replies
7.4k
views
11 follow
Forum: pros- and cons- : programming skills vs. GUI
programming lecture
updated 13 months ago by 43k • written 8.4 years ago by ★ 4.7k
31
votes
8
replies
3.8k
views
6 follow
Forum: Getting Things Done In Bioinformatics (More I Know, Less I Do?)
literature analysis
updated 14 months ago by 43k • written 10.5 years ago by 3.2k
31
votes
41
replies
2.7k
views
12 follow
Forum: Question regarding journal publications
publications journals
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
30
votes
27
replies
2.6k
views
11 follow
Forum: How do you spend your time (productively) when your script is running?
time-management
updated 12 months ago by 43k • written 7.2 years ago by 7.1k
30
votes
13
replies
3.7k
views
11 follow
Forum: what is your daily must see bioinformatics web site?
learn technology
updated 10 months ago by 43k • written 9.6 years ago by 9.7k
30
votes
5
replies
4.0k
views
Forum: I'm applying for a non-PhD bioinformatics position in your lab. What do you look for?
sequencing
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 100
30
votes
16
replies
2.2k
views
9 follow
Forum: Which programming langauge shall I start as a beginner in Bioinformatics
programming-language single-cell
updated 10 months ago by 43k • written 4.0 years ago by • 0
30
votes
31
replies
3.8k
views
11 follow
Forum: I need your help to find my future
internship masters career
updated 12 months ago by 43k • written 7.8 years ago by ▴ 90
30
votes
19
replies
10k
views
6 follow
Forum: Programming language use distribution from recent programs / articles
programming-language programs
updated 11 months ago by 43k • written 7.0 years ago by 11k
29
votes
4
replies
7.8k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 13 months ago by 43k • written 3.2 years ago by ▴ 240
29
votes
21
replies
6.2k
views
Forum: PhD vs Field application scientist in industry
career
updated 12 months ago by 43k • written 7.7 years ago by ▴ 80
29
votes
16
replies
3.2k
views
Forum: Making bioinformatics help and tutorials open
ensembl
updated 13 months ago by 43k • written 9.7 years ago by 23k
29
votes
18
replies
2.7k
views
12 follow
Forum: what are the big questions in bioinformatics field nowadays
genome
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
29
votes
10
replies
6.5k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 13 months ago by 43k • written 6.1 years ago by 21k
29
votes
17
replies
2.3k
views
6 follow
Forum: Can Biostars use question template like Github issue/PR?
meta biostars template
updated 12 months ago by 43k • written 7.2 years ago by 8.4k
29
votes
10
replies
3.1k
views
Forum: How do you perform functional testing for your Bioinformatics tools?
development testing bug reliability
updated 11 months ago by 43k • written 7.1 years ago by 8.4k
29
votes
4
replies
6.9k
views
Forum: Biostar Vs. Seqanswers: What Is The Difference?
biostars
updated 14 months ago by 43k • written 11.0 years ago by ★ 1.1k
29
votes
10
replies
9.2k
views
Forum: Principles of Tidy Data (Hadley Wickham) and the VCF format
vcf tidy-data
updated 2.2 years ago by 43k • written 9.4 years ago by 28k
29
votes
18
replies
3.3k
views
7 follow
Forum: Should I quit PhD program?
education career research phd
updated 11 months ago by 43k • written 6.0 years ago by ▴ 30
29
votes
13
replies
3.6k
views
6 follow
Forum: Map of bioinformatics or who is bioinformatician.
self-study
updated 12 months ago by 43k • written 7.4 years ago by ▴ 260
28
votes
7
replies
5.3k
views
Forum: Open Source projects to contribute to
contribute open-source
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 90
28
votes
14
replies
6.9k
views
9 follow
Forum: How Do You Use Cloud Computing For Bioinformatics In 2013?
cloud
updated 14 months ago by 43k • written 10.9 years ago by 11k
28
votes
1
reply
6.9k
views
Forum: Bedops: The Fastest, Most Scalable, And Easily-Parallelizable Genome Analysis Toolkit!
bedops genome-analysis
updated 14 months ago by 43k • written 10.9 years ago by 35k
28
votes
15
replies
2.3k
views
12 follow
Forum: Should bioinformaticians learn the scientific names of plants and animals?
sequence
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
28
votes
15
replies
4.5k
views
8 follow
Forum: Anyone Use R For Their Bioinformatics Work?
r
updated 14 months ago by 43k • written 10.5 years ago by ▴ 320
28
votes
31
replies
5.7k
views
8 follow
Forum: Biostar Ads Are Now Live. Feedback And Comments Are Sought.
biostars
updated 14 months ago by 43k • written 10.9 years ago by 100k
28
votes
7
replies
1.9k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 13 months ago by 43k • written 3.1 years ago by ▴ 250
28
votes
11
replies
3.2k
views
9 follow
Forum: Getting started with NGS analysis, common issues?
software-error next-gen
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 50
28
votes
14
replies
8.3k
views
8 follow
Forum: Should I work first in a Bioinformatics company or get a Ph. D.?
Biochemistry PhD career
updated 13 months ago by 43k • written 8.0 years ago by ▴ 20
28
votes
13
replies
2.7k
views
Forum: Are there any workshops which are tailored to non-beginners/intermediate bioinformatics?
workshop
updated 18 months ago by 43k • written 8.7 years ago by ★ 4.0k
28
votes
13
replies
1.5k
views
6 follow
Forum: Suppose you have a sequencer that can read the genome end-to-end. What aspects of bioinformatics will become irrelevant?
future
updated 16 months ago by 43k • written 7.5 years ago by ▴ 40
27
votes
33
replies
3.8k
views
7 follow
Forum: Biostars question catagories
statistics biostars meta
updated 12 months ago by 43k • written 7.5 years ago by 13k
27
votes
11
replies
3.7k
views
10 follow
Forum: Which programming language to integrate several open source software into one working pipeline (software)
MEGA pipeline
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 70
27
votes
19
replies
4.6k
views
10 follow
Forum: Google genomics cloud platform ?
genome cloud
updated 13 months ago by 43k • written 8.9 years ago by 12k
27
votes
0
replies
8.1k
views
Forum: Heng Li of BWA and Samtools uses this
uses-this
updated 13 months ago by 43k • written 9.6 years ago by 100k
27
votes
21
replies
9.2k
views
9 follow
Forum: Better for my career: Degree in computer science or Phd in bioinformatics?
computer-science phd
updated 12 months ago by 43k • written 7.6 years ago by ★ 1.7k
27
votes
22
replies
5.7k
views
8 follow
Forum: Recommendations of Linux distros for beginners in bioinformatics
training linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 810
27
votes
17
replies
5.1k
views
Forum: Data sharing via Bittorrent is coming to Biostar
biostars bittorrent
updated 14 months ago by 43k • written 9.8 years ago by 100k
1,000 results • Page 4 of 20
Recent Votes
Answer: p-value in CIBERSORT
Answer: Can I have multiple active GDC download tokens?
Answer: Can I have multiple active GDC download tokens?
Comment: Can I have multiple active GDC download tokens?
Comment: Programmatically retrieving positions of protein active site residues
Comment: Programmatically retrieving positions of protein active site residues
Extracting genomic feature sequences from GTF/GFF files with AGAT
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Recent Replies
Comment: Post-imputation plot by LChart 3.9k
I would pull out the variants with panel_freq ~ 1 - upload_freq and min(panel_freq, upload_freq) < 0.4. I would check if these are G/C or A…
Comment: Telescope issue by eleven11 • 0
Hello the output is A01940:33:GW2208142379th:3:1317:24126:3505 355 chr14 16651125 0 150M = 17034150 122900 GCTAACAGAGTTGAACCTTTCTATTG…
Comment: What does 'bundle_uuid' refer to in this metadata sheet? by GenoMax 141k
Looking at the [code here][1] `bundle_uuid` seems to be related to the submissions to HCA. Samples that ran on multiple lanes seem to have …
Comment: What does it mean single base resolution in sequencing? by LauferVA 4.2k
this is very true and increasingly true as time goes forward. thanks for supplementing this post with your own :-)
Comment: What does 'bundle_uuid' refer to in this metadata sheet? by jeffrey.maurer.informatics • 0
Thank you, but I've already checked out that site to see if I was missing anything and I don't see any answers to my questions there.
Answer: p-value in CIBERSORT by Aspire ▴ 320
You have not explicitly specified the number of permutations (which are used to calculate the p-value). The default value of the permutatio…
Comment: Telescope issue by GenoMax 141k
> CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9954941 Problem appears to be at that line. Can you …
Comment: KEGG Pathways by Ram 43k
Give us as much detail as you can. What error does it give you?
Comment: What does 'bundle_uuid' refer to in this metadata sheet? by GenoMax 141k
SRA Run Selector shows a better view of the metadata: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761679&o=acc_s%3Aa
Comment: Adjust pvalue in R with different approach give me all different outcome by Aspire ▴ 320
- `p.adjust()` is supposed to receive a **numeric vector of p-values**, not a matrix. - It makes no sense to "adjust" just one p-value, …
Comment: Downsampling fastq file by marco.barr ▴ 80
I understood where the problem lies. I discussed with my wet lab colleagues (this is part of a bioinformatician's job...) and by showing th…
Comment: Programmatically retrieving positions of protein active site residues by me ▴ 760
This question fits in nicely with the [SIB Swiss Institute of Bioinformatics course on Enzyme information in UniProt][1] [1]: https://w…
Answer: Programmatically retrieving positions of protein active site residues by me ▴ 760
This can be done via SPARQL at the UniProt.org sparql endpoint PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX fald…
Comment: KEGG Pathways by Sudip • 0
No it does not. Do you know of a way that can help me achieve what I want?
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x by GenoMax 141k
UniRef file is 43G compressed so probably will become ~60G when uncompressed. You would likely be looking at at least that much +10-20% GB …
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