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1,000 results • Page 5 of 20
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Forum: Solution: Gatk Doesn't Recognize Karyotypic Ordering
picard gatk hg19
updated 14 months ago by 43k • written 10.3 years ago by 8.2k
32
votes
9
replies
5.9k
views
Forum: Embrace The Non-Googlers Of Biostars
meta biostars
updated 15 months ago by 43k • written 10.9 years ago by ★ 4.1k
25
votes
39
replies
5.9k
views
8 follow
Forum: Bioinformatics Study Group
study-group
updated 14 months ago by 43k • written 10.9 years ago by ▴ 440
10
votes
4
replies
5.8k
views
Forum: Bioinformatics: Which language should I learn
programming
updated 11 months ago by 43k • written 5.0 years ago by • 0
10
votes
0
replies
5.8k
views
Forum: Kai Wang of Annovar and PennCNV uses this
uses-this
updated 14 months ago by 43k • written 9.6 years ago by 100k
28
votes
31
replies
5.8k
views
8 follow
Forum: Biostar Ads Are Now Live. Feedback And Comments Are Sought.
biostars
updated 15 months ago by 43k • written 10.9 years ago by 100k
15
votes
7
replies
5.8k
views
8 follow
Forum: How would you master a programming language (e.g. R, python etc)
Python programming R
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 920
27
votes
22
replies
5.7k
views
8 follow
Forum: Recommendations of Linux distros for beginners in bioinformatics
training linux
updated 12 months ago by 43k • written 6.4 years ago by ▴ 810
7
votes
6
replies
5.7k
views
Forum: OMICtools - Call for curators
NMR MS NGS microarray PCR
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 450
24
votes
13
replies
5.7k
views
6 follow
Forum: The ethics of sci-hub
paywall open-science journals publications
updated 13 months ago by 43k • written 7.8 years ago by 47k
60
votes
25
replies
5.7k
views
8 follow
Forum: Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size statistical-power RNA-Seq
updated 11 months ago by 43k • written 3.7 years ago by ▴ 230
4
votes
3
replies
5.7k
views
Forum: Masters Or Phd In Bioinformatics
masters career phd
updated 14 months ago by 43k • written 11.2 years ago by • 0
57
votes
9
replies
5.7k
views
14 follow
Forum: Handbooks for Bioinformatics Ninjas
gallery
updated 13 months ago by 43k • written 8.0 years ago by ★ 9.4k
54
votes
16
replies
5.7k
views
13 follow
Forum: The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto computational-cost
updated 15 months ago by 43k • written 9.0 years ago by 100k
26
votes
6
replies
5.6k
views
9 follow
Forum: Making a living with bioinformatics
career
updated 23 months ago by 43k • written 6.0 years ago by ▴ 150
88
votes
24
replies
5.6k
views
10 follow
Forum: How To Be Helpful As A Biostar Moderator/Editor?
biostars
updated 15 months ago by 43k • written 11.2 years ago by 1.9k
32
votes
5
replies
5.6k
views
Forum: ipython notebooks on bioinformatics and genomics
python
updated 13 months ago by 43k • written 8.9 years ago by ★ 2.1k
70
votes
19
replies
5.6k
views
13 follow
Forum: Thrown Into A Bioinformatics Position
computational-analysis
updated 22 months ago by 43k • written 8.6 years ago by ▴ 170
12
votes
24
replies
5.6k
views
8 follow
Forum: Biostar 2.0, Second Beta, Help Us Test The New Site
biostars
updated 15 months ago by 43k • written 10.1 years ago by 100k
10
votes
10
replies
5.6k
views
Forum: Data integration between gene expression - RNAseq and DNA methylation - Illumina 450k
RNA-Seq dna-methylation
updated 13 months ago by 43k • written 7.9 years ago by ▴ 80
31
votes
4
replies
5.6k
views
8 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2016?
Assembly sequencing RNA-Seq
updated 13 months ago by 43k • written 7.4 years ago by ★ 2.8k
12
votes
12
replies
5.5k
views
8 follow
Forum: Please, please, define what a 'read' is.
read
updated 13 months ago by 43k • written 7.5 years ago by ▴ 20
1
vote
1
reply
5.5k
views
Forum: MD/Masters vs MD/PhD
ms md phd education
updated 24 months ago by 43k • written 9.2 years ago by • 0
11
votes
6
replies
5.5k
views
Forum: Biostar on Google Summer of Code. Suggest features that you would like to see!
biostars gsoc
updated 15 months ago by 43k • written 10.0 years ago by 100k
17
votes
9
replies
5.4k
views
7 follow
Forum: My Friend Anthony Made This Cool Mini-Site To Find A Freelance Bioinformatics Job. Can You Help Him Out?
career
updated 14 months ago by 43k • written 10.6 years ago by 2.3k
22
votes
10
replies
5.4k
views
Forum: Publishing Bioinformatics Results
subjective conference
updated 14 months ago by 43k • written 10.9 years ago by ★ 1.1k
2
votes
4
replies
5.4k
views
Forum: Plink calculator for calculating pairwise LD
LD plink SNP
updated 14 months ago by 43k • written 9.2 years ago by • 0
16
votes
5
replies
5.4k
views
Forum: Greatest Achievements In Bioinformatics Other Than Human Genome
bioinformatics
updated 14 months ago by 43k • written 11.3 years ago by 3.2k
80
votes
34
replies
5.4k
views
11 follow
Forum: Authorship issues- how to resolve?
authorship
updated 16 months ago by 43k • written 9.0 years ago by ▴ 520
1
vote
8
replies
5.4k
views
Forum: Would you use sci-hub's mirror site?
sci-hub
updated 11 months ago by 43k • written 4.4 years ago by • 0
15
votes
5
replies
5.3k
views
Forum: Free Ensembl Courses
ensembl genome-browser
updated 14 months ago by 43k • written 10.9 years ago by 23k
34
votes
23
replies
5.3k
views
8 follow
Forum: Unbelievably rapid NGS analysis by Churchill
sequencing NGS churchill
2.1 years ago by Ram 43k
21
votes
13
replies
5.3k
views
12 follow
Forum: User Friendly VCF Filtering Tools
vcf variant-calling
updated 13 months ago by 43k • written 7.9 years ago by 6.6k
80
votes
23
replies
5.3k
views
11 follow
Forum: Are we facing a bioinformatician shortage?
salary career
updated 14 months ago by 43k • written 9.5 years ago by ★ 3.0k
28
votes
7
replies
5.3k
views
Forum: Open Source projects to contribute to
contribute open-source
updated 2.0 years ago by 43k • written 9.3 years ago by ▴ 90
44
votes
11
replies
5.3k
views
7 follow
Forum: Asking The Developers Before Asking Biostars
meta
updated 14 months ago by 43k • written 10.6 years ago by ▴ 860
13
votes
13
replies
5.2k
views
6 follow
Forum: What Next After Snp Identification
disease genomics ngs
updated 14 months ago by 43k • written 10.4 years ago by ▴ 80
15
votes
9
replies
5.2k
views
11 follow
Forum: PhD research proposal - Need current topics
research Phd
updated 21 months ago by 43k • written 8.3 years ago by ▴ 490
2
votes
2
replies
5.2k
views
Forum: Sending Personal Messages To Users : Cool Feature To Implement Or Not [Biostar Network]
network biostars
updated 15 months ago by 43k • written 12.1 years ago by 11k
9
votes
8
replies
5.2k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 14 months ago by 43k • written 8.9 years ago by ★ 2.2k
2
votes
5
replies
5.2k
views
Forum: Metagenomics Raw dataset
metagenomics
updated 23 months ago by 43k • written 8.3 years ago by • 0
47
votes
14
replies
5.2k
views
Forum: Was FASTA ever popular?
FASTA alignment
updated 13 months ago by 43k • written 7.6 years ago by 13k
9
votes
8
replies
5.1k
views
Forum: R or python, which one do you prefer in analysing scRNAseq datasets?
R RNA-Seq python
updated 11 months ago by 43k • written 6.0 years ago by • 0
27
votes
17
replies
5.1k
views
Forum: Data sharing via Bittorrent is coming to Biostar
biostars bittorrent
updated 15 months ago by 43k • written 9.8 years ago by 100k
13
votes
12
replies
5.1k
views
6 follow
Forum: How Can I Remove My Post From Biostar.
meta biostars
updated 15 months ago by 43k • written 11.1 years ago by ▴ 20
23
votes
15
replies
5.1k
views
6 follow
Forum: On the usage of Golang
assembly next-gen alignment
updated 11 months ago by 43k • written 5.6 years ago by ▴ 80
37
votes
30
replies
5.1k
views
7 follow
Forum: Spam In Rss Feeds
meta RSS
updated 14 months ago by 43k • written 11.3 years ago by 5.3k
81
votes
21
replies
5.1k
views
16 follow
Forum: [UPDATE] Thrown into a Bioinformatics Position
bioinformatics
updated 14 months ago by 43k • written 7.9 years ago by ★ 3.2k
11
votes
4
replies
5.1k
views
Forum: Can anyone with clinical experience tell me how to get involved in medical informatics?
clincal-informatics
updated 14 months ago by 43k • written 9.5 years ago by 7.4k
3
votes
8
replies
5.1k
views
7 follow
Forum: BSc Computer Science dissertation project ideas
gene bayesian-network regulatory-network
updated 20 months ago by 43k • written 8.6 years ago by • 0
1,000 results • Page 5 of 20
Recent Votes
A: How to integrate multiple data sets from microarray platform prior meta-analysis
How to integrate multiple data sets from microarray platform prior meta-analysis?
A: NCBI Accession Number to Taxonomy ID
Answer: Server or aws cloud- which one is better for gatk pipeline
Comment: How to remove multiple batch effects from RNA-seq data before limma differential
Comment: automatic clustering annotation using python
automatic clustering annotation using python
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Popular Question to rj.rezwan • 0
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Recent Replies
Comment: java.nio.bufferunderflowexception haplotypecaller error for bqsr reads by analyst ▴ 50
# COMMAND FOR BQSR # step 1: building the model java -jar -Xmx50G gatk.jar BaseRecalibrator -I input.bam -R whaet.fa --known-sites w…
Answer: CNVKIT - unable to produce scatter and diagram pdfs by Anitha • 0
While running with this batch option batch --method wgs option. I have used this command " cnvkit.py batch tumor.bam -n normal.bam -m wgs -…
Answer: Generating .bed file and .map file for polyploid vcf file through plink by chrchang523 10k
Why do you think ADMIXTURE supports polyploid input? (Note that this is an answer, not a comment.)
Comment: How to convert normalized BigWig file to count matrix? by feather-W • 0
Hi ATpoint, Thanks for your reply!
Comment: How to convert normalized BigWig file to count matrix? by feather-W • 0
Hi Pierre, Thanks for your reply! I want to get a feature count matrix from coverage data stored in BigWig files. And this BigWig file ha…
Comment: Extracting mutation status from MAF files - TCGA by Zhenyu Zhang ★ 1.2k
you can assume all genes without mutation is WT (easy) while controlling for (difficult) - coverage - capture region - germline - the …
Comment: Obtaining Infinium Methylation450K manifest for hg38 by Zhenyu Zhang ★ 1.2k
Since you are getting data from the GDC, analysis-related reference/annotations can be found in the GDC reference page here https://gdc.can…
Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py by fracarb8 ★ 1.6k
I saw that, but considering that your analysis is in seurat and that both liana and liana+ are from the same developers, it might be quicke…
Answer: Nomalization - TCGA, RNA-seq and Microarray by Zhenyu Zhang ★ 1.2k
You can rank normalize them, but to tell the truth, I won't trust any conclusion you can draw from such combined data. The recommended …
Comment: How to remove multiple batch effects from RNA-seq data before limma differential by ATpoint 82k
Include confounders into the limma design. No need for upfront removal. Note that libsize is taken care of by normalizing usually. Are you …
Comment: Longest transcript variant per gene by sansan_96 ▴ 90
Thank you very much, success in your projects.
Comment: In IGV is this a heterogeneous mutation or false call? by Tuck898 • 0
Thanks for the input :)
Comment: install package: package ‘gmwm’ is not available for this version of R by Pine ▴ 20
This seems to indicate that the package itself (or packages it depends on) are not compatible with the R version you are using. Next step c…
Answer: Tissue-specific DEG analysis with DEseq2 by arctic ▴ 40
Not my area of expertise but GTEx portal seems to offer visual comparison of expression across tissues, maybe checking their pipeline could…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> I think I am mostly struggling with what would need to be coded to my dataset here and how to run this loop on my set in general. i do…
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