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1,000 results • Page
7 of 20
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Votes
Replies
9
votes
30
replies
11k
views
small RNA-seq pipelines
small-RNA-seq
pipelines
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Saad Khan
▴ 440
4
votes
30
replies
2.4k
views
Script makes different file then the manual command, but the command is the same
pipeline
linux
awk
3.8 years ago by
stan.aanhane
▴ 30
4
votes
30
replies
2.5k
views
SNPs and DEL/MNP in the same position. (DEL or SNP ??)
snp
indels
vcf
calls
mpileup
updated 3.8 years ago by
Ram
43k • written 3.8 years ago by
sami
▴ 40
58
votes
30
replies
11k
views
13 follow
Content Management Systems For Bioinformatics Websites
web
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Khader Shameer
18k
31
votes
30
replies
15k
views
6 follow
Tool:
BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, venn diagram, you name it.
gene
RNA-Seq
Venn-diagram
PCA
updated 10 months ago by
Ram
43k • written 6.0 years ago by
Jennifer Pham
▴ 450
47
votes
30
replies
6.2k
views
13 follow
How To Extract Part Of A Line In File ?
parsing
gene
updated 13.1 years ago by
Niallhaslam
2.3k • written 13.1 years ago by
Divya
▴ 70
50
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 5 weeks ago by
Istvan Albert
100k • written 8.2 years ago by
Ram
43k
28
votes
30
replies
7.1k
views
6 follow
Similarity between two FASTA files
similarity
distance
updated 4.9 years ago by
Biostar
20 • written 5.8 years ago by
firestar
★ 1.6k
123
votes
29
replies
36k
views
11 follow
PCA in a RNA seq analysis
RNA-Seq
pca
updated 5.5 years ago by
Giovanni M Dall'Olio
28k • written 6.5 years ago by
Mozart
▴ 330
9
votes
29
replies
7.6k
views
8 follow
10x Supernova de novo assembly
Assembly
10x
updated 4.5 years ago by
samnioue
▴ 10 • written 7.4 years ago by
igor
13k
33
votes
29
replies
17k
views
15 follow
Writing Collaboration With Source-Control And Microsoft-Word
updated 13.8 years ago by
Egon Willighagen
5.4k • written 13.8 years ago by
Will
4.5k
16
votes
29
replies
1.8k
views
Gene labels problem in enhanced volcano
R
ggplot2
enhancedvolcano
updated 3 months ago by
Mensur Dlakic
★ 27k • written 3 months ago by
anasjamshed
▴ 120
34
votes
29
replies
32k
views
10 follow
Downloading And Maintaining A Local, Blast-Able Nr Database
ncbi
database
blast
installation
updated 24 months ago by
Ram
43k • written 13.1 years ago by
Anjan
▴ 830
62
votes
29
replies
8.0k
views
14 follow
Best bioinfo one-liners?
linux
updated 16 months ago by
Ram
43k • written 9.0 years ago by
Manu Prestat
4.1k
18
votes
29
replies
3.9k
views
9 follow
How to match genes of one file to another but in multiple columns
genome
sequence
gene
alignment
6.1 years ago by
Bweil2
▴ 10
66
votes
29
replies
16k
views
15 follow
Forum:
Fundamentals Of Designing Biological Databases?
database
updated 14 months ago by
Ram
43k • written 13.5 years ago by
anon1234z
▴ 130
15
votes
29
replies
7.1k
views
Fastest way to search barcode string with two mismatches in fastq file using perl?
perl
fastq
barcode
demultiplex
updated 8.0 years ago by
John
13k • written 8.0 years ago by
sun.nation
▴ 140
33
votes
29
replies
20k
views
12 follow
Large File Transfers Of Ngs Data: Rsync / Bbcp / Unison / What?
data
updated 16 months ago by
Ram
43k • written 10.8 years ago by
Dan Sheppard
▴ 110
84
votes
29
replies
32k
views
20 follow
Tutorial:
How to create a mutation landscape (waterfall) plot with GenVisR
BioConductor
GenVisR
Graphics
R
updated 9 months ago by
amziepickles
• 0 • written 8.2 years ago by
Obi Griffith
20k
136
votes
29
replies
7.6k
views
16 follow
How Do We Discourage Ad-Hoc Bioinformatic Analyses?
software
updated 2.0 years ago by
Ram
43k • written 13.4 years ago by
Jeremy Leipzig
22k
41
votes
29
replies
15k
views
17 follow
Which Assembler To Use For Metagenomic Sequences?
metagenomics
assembly
updated 10.7 years ago by
ugly.betty77
★ 1.1k • written 14.1 years ago by
Panos
★ 1.8k
124
votes
29
replies
7.3k
views
18 follow
What License Do You Use When You Release Code And Data?
software
general
subjective
updated 6 months ago by
Ram
43k • written 14.1 years ago by
Simon Cockell
7.4k
4
votes
29
replies
11k
views
6 follow
WGCNA soft thresholding problem
WGCNA
RNA-Seq
soft thresholding
data normalization
updated 10 weeks ago by
foejvs546
▴ 10 • written 5.4 years ago by
catagui
▴ 40
6
votes
29
replies
3.2k
views
Column lengths differ error (ArchR)
atac-seq
cellranger
r
archr
updated 22 months ago by
GenoMax
142k • written 23 months ago by
bioinformatics.girl
▴ 20
9
votes
29
replies
7.0k
views
Larger-Than-Expected Total Scaffolds Size Using Nextera Mate Pairs
assembly
9.9 years ago by
Rayan Chikhi
★ 1.5k
20
votes
29
replies
2.5k
views
6 follow
Using bcftools to find unique alt homozygous sites
bcftools
updated 6 months ago by
Pierre Lindenbaum
161k • written 6 months ago by
Axzd
▴ 70
14
votes
29
replies
3.5k
views
11 follow
perl programming query
perl
motif
sequence
updated 7.4 years ago by
zjhzwang
▴ 180 • written 7.4 years ago by
kriti.awasthi23
▴ 10
12
votes
29
replies
5.9k
views
compute depth of coverage for certain regions of the genome using samtools depth
depth of coverage
samtools
updated 6.0 years ago by
finswimmer
16k • written 6.0 years ago by
Ana
▴ 200
0
votes
29
replies
3.0k
views
concordance rate between SNP observed and SNP not observed
SNP
updated 5.9 years ago by
Biostar
20 • written 6.0 years ago by
nour.hadjz
▴ 20
18
votes
29
replies
17k
views
7 follow
What is the best way to match gene id with gene name.
RNA-Seq
R
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
M K
▴ 660
11
votes
29
replies
9.9k
views
SummarizedExperiment nrow differs from ncol
DESeq2
SummarizedExperiment
updated 2.6 years ago by
Ram
43k • written 9.9 years ago by
Parham
★ 1.6k
29
votes
29
replies
3.5k
views
6 follow
Tool:
weld (former brew) - yet another fastq utility
illlumina
python
updated 21 months ago by
Ram
43k • written 8.3 years ago by
tinysnippets
▴ 40
18
votes
29
replies
4.5k
views
Script To Print Number Of Occurences Of Genes From Multifasta File
fasta
scripting
updated 12.6 years ago by
Rm
8.3k • written 12.6 years ago by
Syed Imtiyaz
▴ 40
22
votes
29
replies
6.6k
views
7 follow
Top In-Silico Drug Discovery Papers
publication
drug
updated 2.8 years ago by
Ram
43k • written 12.8 years ago by
Flow
★ 1.5k
7
votes
29
replies
2.5k
views
What's the powerful biological methods for significant genes selection?
gene selection
significant
biological method
R
5.4 years ago by
Chaimaa
▴ 260
19
votes
29
replies
11k
views
If the index sequences in my Illumina FASTQ headers aren't the barcodes, then what are they?
next-gen
sequencing
fastq
illumina
updated 7.9 years ago by
harold.smith.tarheel
★ 4.9k • written 7.9 years ago by
jenn.drummond
▴ 80
13
votes
29
replies
8.6k
views
First time using maker
genome
annotation
maker
7.8 years ago by
Rox
★ 1.4k
279
votes
29
replies
284k
views
25 follow
How To Filter Mapped Reads With Samtools
samtools
updated 17 months ago by
Ram
43k • written 11.5 years ago by
sohadb1357
▴ 640
70
votes
29
replies
15k
views
13 follow
Tutorial:
Generating consensus sequence from bam file
fasta
consensus
bam
updated 7 weeks ago by
jkbonfield
★ 1.2k • written 5.2 years ago by
finswimmer
16k
11
votes
29
replies
9.2k
views
ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
bisulphite sequencing
methylation ratio
BSMAP
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
atoogoe
▴ 30
86
votes
29
replies
10.0k
views
9 follow
Forum:
What is the future of EMBL-EBI (and European bioinformatics in general) in case of a 'Brexit'?
EU
brexit
EBI
politics
updated 13 months ago by
Ram
43k • written 7.9 years ago by
Michael
54k
10
votes
28
replies
11k
views
Problem Installing Rpy2 On A Mac Os X 10.5.8
r
python
updated 4.9 years ago by
Ram
43k • written 13.6 years ago by
Schrodinger'S Cat
▴ 210
39
votes
28
replies
11k
views
10 follow
How Much Does It Cost To Align A Flowcell In The Cloud?
cloud
3 months ago by
Jeremy Leipzig
22k
4
votes
28
replies
2.4k
views
Questions About How to Plot NOMe-seq Plot
next-gen
ChIP-Seq
BS-seq
5.4 years ago by
Ashley
▴ 90
17
votes
28
replies
25k
views
15 follow
Extract Base Based On Position From Bam File
mpileup
samtools
updated 21 months ago by
Prakki Rama
★ 2.7k • written 11.9 years ago by
Empyrean
▴ 170
43
votes
28
replies
8.0k
views
13 follow
Hardware Needed To Analyse Microarray Data With R/Bioconductor
hardware
microarray
analysis
r
bioconductor
updated 12.7 years ago by
W Langdon
▴ 30 • written 13.2 years ago by
John
▴ 70
43
votes
28
replies
5.6k
views
13 follow
Post Your Prefered Bioinformatics Short Code
code
updated 5 months ago by
Ram
43k • written 14.1 years ago by
Eric Normandeau
11k
9
votes
28
replies
6.1k
views
Getting in frame stop codons from fasta
python
updated 7.6 years ago by
WouterDeCoster
47k • written 7.6 years ago by
User000
▴ 690
32
votes
28
replies
5.9k
views
7 follow
How to create 12.8 billion unique alphanumeric strings of length ranging from 2-6?
R
perl
updated 7.5 years ago by
John
13k • written 7.5 years ago by
anu014
▴ 190
21
votes
28
replies
5.1k
views
How to combine 2 incomplete GTF
Cufflinks
Cuffcompare
GTF
Cuffmerge
Merge
3.0 years ago by
Rafael Soler
★ 1.2k
1,000 results • Page
7 of 20
Recent Votes
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Answer: TFs and Gene databases
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Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
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The seven genotypes being 58025AA, 58025AG, 58051TT, 58051TC, 58051CC, 58057TT, 58057TC
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See [TFlink](https://tflink.net/), [KnockTF2](https://bio.liclab.net/KnockTFv2/index.php), [TFBSDB](https://tfbsdb.systemsbiology.net/), an…
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> Seven genotpyes have been sampled and all variants, which belong to one of those genotpyes are to be "erased" (or every other variant exc…
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please provide the design matrix mean the metadata of the model fit2 which is there in the code . i guess other users can help
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