Limit : all time
all time today this week this month this year
1,000 results • Page 1 of 20
Sort: Rank
Rank Views Votes Replies
6
votes
4
replies
410
views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
11 days ago by Estevão ▴ 10
0
votes
0
replies
186
views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
20 days ago by yxwucq • 0
5
votes
2
replies
348
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 27 days ago by 43k • written 27 days ago by ▴ 20
7
votes
7
replies
1.8k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 28 days ago by ★ 2.5k • written 28 days ago by • 0
1
vote
2
replies
389
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
26 days ago by Javier • 0
16
votes
10
replies
1.1k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 6 weeks ago by 5.3k • written 6 weeks ago by ★ 2.4k
1
vote
1
reply
239
views
Forum: Can I use this community for software development?
software-development
updated 7 weeks ago by 43k • written 7 weeks ago by • 0
5
votes
2
replies
402
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 7 weeks ago by 54k • written 7 weeks ago by • 0
0
votes
0
replies
189
views
Forum: Field of Study in Computational Biology
Genomics Computational-Biology PhD
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
1
vote
3
replies
502
views
Forum: Development plan for a bioinformatics database developer/coder
developer
8 weeks ago by pixie@bioinfo ★ 1.5k
7
votes
8
replies
750
views
Forum: Bioinformatics career transition
career forum
updated 8 weeks ago by ★ 16k • written 8 weeks ago by ▴ 20
4
votes
2
replies
524
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
9 weeks ago by Anatoly A. ▴ 10
6
votes
6
replies
804
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
9 weeks ago by jared.andrews07 ★ 16k
0
votes
0
replies
188
views
Forum: What other data types and pipelines you would like to see from the Genomics Data Commons (GDC)
gdc tcga genomics-data-commons
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 1.2k
0
votes
2
replies
418
views
Forum: What's the state of the art in bacterial whole genome alignment?
whole genome alignment mauve
10 weeks ago by Dave Carlson ★ 1.7k
33
votes
12
replies
1.1k
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
10 weeks ago by karlaarz ▴ 110
5
votes
4
replies
594
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 11 weeks ago by 142k • written 11 weeks ago by ▴ 10
1
vote
2
replies
397
views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
Maternity Career-Gap career-reentry
updated 11 weeks ago by 82k • written 11 weeks ago by ▴ 20
8
votes
7
replies
851
views
6 follow
Forum: Tower Server configuration for NGS data analysis
NGS
updated 11 weeks ago by ▴ 120 • written 3 months ago by • 0
1
vote
0
replies
299
views
Forum: list of bioinformatics tools in cancer genomics
mutations CNA cancer genomics LOH
updated 12 weeks ago by 161k • written 12 weeks ago by ★ 1.4k
4
votes
2
replies
399
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 10
8
votes
6
replies
2.9k
views
Forum: Demonstrating Exponential Growth In Pre-School
education
written 10.2 years ago by 10k
0
votes
0
replies
214
views
Forum: tutorial for carrier screening analyses?
carrier-screening
updated 3 months ago by 43k • written 3 months ago by ▴ 20
2
votes
3
replies
453
views
Forum: My Project
Project CLI MD-Simulations Molecular-docking
3 months ago by Ajay A Shettigar • 0
17
votes
11
replies
1.0k
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by sil_bioinfo ▴ 40
10
votes
7
replies
2.3k
views
Forum: How to learn bioinformatics?
learning
updated 3 months ago by ★ 1.3k • written 24 months ago by ▴ 20
26
votes
27
replies
2.1k
views
10 follow
Forum: Determining computer time required
computer hpc time
updated 3 months ago by ★ 6.0k • written 4 months ago by ▴ 40
7
votes
6
replies
764
views
Forum: where to work as a bioinformatician (NGS/IA)
employment omics ia ngs
updated 3 months ago by 43k • written 4 months ago by ▴ 20
21
votes
12
replies
3.6k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
3 months ago by Ram 43k
2
votes
1
reply
456
views
Forum: Cataloguing available spatial transcriptomics tools, then linking them together into a workflow?
cytassist transcriptomics nanostring xenium visium
4 months ago by LauferVA 4.2k
49
votes
20
replies
2.1k
views
10 follow
Forum: First experiences matter
first-time tolerance
updated 4 months ago by ★ 2.6k • written 4 months ago by ★ 27k
4
votes
3
replies
807
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 43k • written 4 months ago by ▴ 10
2
votes
2
replies
598
views
Forum: Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat single-cell omics batch rnaseq
updated 4 months ago by 43k • written 4 months ago by ▴ 40
0
votes
2
replies
3.3k
views
Forum: I’m considering a career transition from software engineering to bioinformatics. Is it a good fit for me?
career
updated 4 months ago by 142k • written 4 months ago by ▴ 10
5
votes
3
replies
633
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 4 months ago by ★ 27k • written 4 months ago by ▴ 20
6
votes
2
replies
685
views
Forum: how to start Bioinformatics?
basics
updated 5 months ago by ★ 27k • written 5 months ago by • 0
19
votes
5
replies
1.2k
views
6 follow
Forum: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2023?
genomics snps survey papers
4 months ago by Raony Guimarães ★ 1.4k
4
votes
6
replies
961
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
1
vote
1
reply
505
views
Forum: want to work in open source project/project in bioinformatics
project
updated 5 months ago by 43k • written 5 months ago by • 0
3
votes
5
replies
1.0k
views
Forum: Current Trends in Bioinformatics
structural-bioinformatics
updated 5 months ago by 43k • written 6 months ago by • 0
21
votes
11
replies
2.6k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 14 months ago by ▴ 150
176
votes
46
replies
19k
views
26 follow
Forum: Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
5 months ago by Istvan Albert 100k
3
votes
2
replies
641
views
Forum: RNA-Seq data analysis - question
Python RNA-Seq R
updated 6 months ago by ▴ 10 • written 6 months ago by ▴ 40
0
votes
0
replies
386
views
Forum: How to learn bioinformatics online?
self-education education learning
updated 6 months ago by 43k • written 6 months ago by • 0
6
votes
5
replies
2.3k
views
Forum: Maintaning internal or private installation of Biostar or a similar Q&A site
Biostars
6 months ago by tshtatland ▴ 190
7
votes
9
replies
1.4k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
6 months ago by UT_FAN ▴ 40
0
votes
0
replies
476
views
Forum: Steps after doublet detection in single cell data
scRNA doublet
7 months ago by ishwarvh • 0
0
votes
0
replies
366
views
Forum: Automated Checks And QA
retrospective
7 months ago by Sasha ▴ 840
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 6 months ago by 43k • written 7 months ago by ▴ 10
21
votes
7
replies
12k
views
Forum: Bioinformatics short paper journal resource [software/webapps/database]
journal software webapp
updated 7 months ago by ▴ 100 • written 8.1 years ago by 11k
1,000 results • Page 1 of 20
Recent Votes
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
A: Is Bam One-Based Or Zero-Based?
A: Is Bam One-Based Or Zero-Based?
A: Data Set Suitable For Comparing Wgs, Exome, And Rna-Seq Data Generated From The
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
Practical Haplotype Graph v2 not finding correct paths
Extracting only 4-fold degenerate sites from gene sequences/alignments?
Recent Locations • All
Russia, just now
Canada, just now
United States, just now
United States, 1 minute ago
CU Boulder, 2 minutes ago
United States, 3 minutes ago
United States, 6 minutes ago
Recent Awards • All
Scholar to kalavattam ▴ 190
Scholar to dthorbur ★ 2.0k
Commentator to Santosh Anand 5.7k
Popular Question to lagartija ▴ 160
Popular Question to bioinfo ▴ 150
Popular Question to Sara ▴ 30
Popular Question to anasjamshed ▴ 120
Recent Replies
Answer: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last plac by David Langenberger 11k
Two last seats have just become available. Apply now, if you want them.
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr by GenoMax 142k
You always need to add the following option when you are using `-p` to count paired-end reads. --countReadPairs If specified, fragm…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t by mropri ▴ 150
Hi swbarnes2, that was the problem, they were not numeric but as character columns. converted them and it fixed the error. Thank you for yo…
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr by Prawesh • 0
I figured out: Since featureCounts counts fragments and not reads, we have pair-end data that means **Assigned** value from the output w…
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read by kalavattam ▴ 190
> My question is this: "mate reverse strand" (flag 16/0x10) or "read reverse strand" (flag 32/0x20) do not directly relate to the strandedn…
Answer: How to interpret infinite odds ratio? by bhumm ▴ 140
As you stated, your problem is likely division by 0. See this [Cross-Validated][1] post that seems to be very similar to your problem. In …
Comment: Duplicated sequence samtools by GenoMax 142k
Consider using SLURM job arrays if you want to use a `for` loop inside a single SLURM job: https://hpc.nmsu.edu/discovery/slurm/job-arrays/
Answer: Duplicated sequence samtools by Pierre Lindenbaum 161k
the sequence c_000007023807_aloha2_low_cov is duplicated in the reference grep c_000007023807_aloha2_low_cov path/to/reference.fasta
Comment: imputation through beagle by analyst ▴ 50
Thank you so much dthorbur. Yes I am new to imputation analysis. I will follow your kind suggestions. Thanks again!
Answer: Benchmarking RNASeq Variant Calling Pipeline (Short Reads) by lagartija ▴ 160
I don't know but another way of doing it would be to combine different datasets of different strains that you know are clonal. Then you kno…
Comment: consensus sequence calling by bk11 ★ 2.4k
Please check out these posts https://www.biostars.org/p/367626/
Comment: Galaxy StringTie error by trkfs • 0
will do, thank you
Answer: Splitting Seurat object by sample layers by bk11 ★ 2.4k
You can do the following- Idents(SeuratObj) <- "orig.ident" control_set <- subset(SeuratObj, idents = c("counts.control","data.…
Comment: Galaxy StringTie error by GenoMax 142k
> I have sent a bug report to the Galaxy administrator If you have not done so please post this in Galaxy help forum for directed help: h…
Comment: 44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped by Thind amarinder ▴ 340
Wondering, if it was total RNAseq data? or ployA
Traffic: 2325 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6