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361 results • Page 4 of 8
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6
votes
1
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2.3k
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Forum: How to become employable in Bioinformatics, starting with degree and experience in CS/Software Engineering?
computer-scientist software-engineer
updated 11 months ago by 43k • written 5.8 years ago by • 0
6
votes
5
replies
7.8k
views
Forum: Converting GFF to GTF
GTF GFF
updated 11 months ago by 43k • written 4.2 years ago by 8.6k
6
votes
5
replies
1.0k
views
Forum: Russian universities for the study of biomedicine
russian-university
updated 11 months ago by 43k • written 3.9 years ago by ▴ 30
6
votes
5
replies
13k
views
Forum: Single-end sequencing versus paired-end
Assembly snp sequencing
updated 11 months ago by 43k • written 4.3 years ago by ▴ 20
6
votes
15
replies
1.7k
views
Forum: PhD Bioinformatics on GWAS
SNP GWAS genome PHD
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
6
votes
5
replies
961
views
Forum: Tips on: How to organise data on servers
genotype warehouse servers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 110
6
votes
4
replies
2.5k
views
Forum: Ru/Read Until in Nanopore sequencers
Oxford-Nanopore alignment sequencing
updated 11 months ago by 43k • written 4.3 years ago by ★ 1.7k
6
votes
5
replies
1.1k
views
Forum: A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by 43k • written 4.2 years ago by ▴ 340
6
votes
8
replies
4.0k
views
6 follow
Forum: Workstation : More RAM or Faster RAM
RAM Configuration workstation
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
6
votes
6
replies
2.5k
views
Forum: Trouble finding job with MS in Bioinformatics
next-gen
updated 12 months ago by 43k • written 6.0 years ago by ▴ 10
6
votes
4
replies
443
views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
16 days ago by Estevão ▴ 10
6
votes
6
replies
813
views
Forum: You have 3 days of zero obligations and expansive resources. What are you building?
hypothetical thought-experiment
10 weeks ago by jared.andrews07 ★ 16k
6
votes
5
replies
1.9k
views
Forum: Stanford HCP MS Biomedical Informatics vs Johns Hopkins MS Bioinformatics
career
updated 11 months ago by 43k • written 4.3 years ago by ▴ 70
6
votes
6
replies
1.3k
views
Forum: How can I deal with this publication issue?
publication
updated 12 months ago by 43k • written 6.1 years ago by ▴ 10
5
votes
3
replies
878
views
Forum: price of MSI detection by NGS for 1 person
next-gen
updated 11 months ago by 43k • written 4.9 years ago by ▴ 20
5
votes
8
replies
2.0k
views
7 follow
Forum: Ranking of Bioinformatics tools & resources by the number of users
bioinformatics-tools
updated 11 months ago by 43k • written 5.7 years ago by ▴ 40
5
votes
3
replies
1.4k
views
Forum: Seeking ideas and guidance for an undergraduate project
modelling drug-discovery neural-network
updated 11 months ago by 43k • written 5.7 years ago by ▴ 10
5
votes
4
replies
607
views
Forum: Would reaching out to local labs and startups help with my career transition?
career volunteering
updated 12 weeks ago by 142k • written 12 weeks ago by ▴ 10
5
votes
4
replies
1.0k
views
Forum: I always get the same Scholar Badge
meta
updated 12 months ago by 43k • written 6.1 years ago by 16k
5
votes
2
replies
372
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 20
5
votes
4
replies
1.2k
views
Forum: Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean how-to meta
updated 11 months ago by 43k • written 4.0 years ago by 22k
5
votes
2
replies
408
views
Forum: Can questions and answers on biostars be asked only in English? Can't I use Russian for example?
language
updated 7 weeks ago by 54k • written 7 weeks ago by • 0
5
votes
6
replies
1.1k
views
Forum: COVID19 testing - can we/should we use NGS?
NGS covid19 diagnostics
updated 11 months ago by 43k • written 4.2 years ago by ★ 1.4k
5
votes
5
replies
2.4k
views
Forum: BCL files as deliverables from a sequencing center
core-facility service-provider
updated 11 months ago by 43k • written 5.0 years ago by 5.2k
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 17 months ago by ▴ 70
5
votes
2
replies
1.3k
views
Forum: ISMB bioinfo-core workshop call for lightning talks
conferences
updated 11 months ago by 43k • written 5.0 years ago by 5.3k
5
votes
5
replies
945
views
Forum: What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by 43k • written 4.1 years ago by ★ 4.3k
5
votes
3
replies
647
views
Forum: Binning the rare biosphere
metagenomics soil assembly techniques binning
updated 5 months ago by ★ 27k • written 5 months ago by ▴ 20
4
votes
0
replies
3.5k
views
Forum: How can unique molecular identifiers (UMIs) help to reduce quantitative biases?
NGS Variant-Calling Unique-Molecular-Identifier
updated 11 months ago by 43k • written 5.0 years ago by 11k
4
votes
7
replies
1.5k
views
Forum: Bioinformatics and/or computational biology congress 2019?
congress biology sequencing
updated 11 months ago by 43k • written 5.8 years ago by ★ 2.4k
4
votes
2
replies
536
views
Forum: Exploring Amino Acid Patterns in Proteins Through N-gram Analysis
protein CAFA5
10 weeks ago by Anatoly A. ▴ 10
4
votes
3
replies
1.3k
views
Forum: Computation-Intesive Application in the field of bioinformatics
Computation-Intensive Application Software
updated 11 months ago by 43k • written 5.7 years ago by • 0
4
votes
4
replies
1.1k
views
Forum: Kubernetes in Production?
ci-cd webservice kubernetes docker
updated 11 months ago by 43k • written 4.4 years ago by • 0
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
4
votes
13
replies
1.7k
views
Forum: Looking for Participants: Meenta NovaSeq RunShare Beta
RunShare next-gen NovaSeq
updated 11 months ago by 43k • written 4.8 years ago by ▴ 10
4
votes
6
replies
2.9k
views
Forum: NGS Data Storage Best Practices (Clinical)
NGS clinical storage
updated 11 months ago by 43k • written 4.4 years ago by ▴ 630
4
votes
3
replies
1.2k
views
Forum: Cannot vote in mobil version
meta
updated 12 months ago by 43k • written 6.2 years ago by 16k
4
votes
1
reply
731
views
Forum: Help with Bioinformatics Course
cancer
updated 11 months ago by 43k • written 3.6 years ago by • 0
4
votes
3
replies
1.2k
views
Forum: TACC vs SDSC vs HTCondor
PBS
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
4
votes
1
reply
978
views
Forum: Is there a way to filter biostars tags?
meta
updated 12 months ago by 43k • written 5.9 years ago by ▴ 40
4
votes
4
replies
1.7k
views
Forum: When will the hg19/grch37 finally become obsolete?
Reference-Genome
updated 11 months ago by 43k • written 5.0 years ago by ▴ 10
4
votes
0
replies
908
views
Forum: Help make UMI-tools even better - take our survey
Survey UMI UMI-Tools
updated 11 months ago by 43k • written 4.6 years ago by 19k
4
votes
2
replies
2.2k
views
Forum: wet-lab vs dry-lab scientists
cv language
updated 11 months ago by 43k • written 4.3 years ago by 13k
4
votes
3
replies
926
views
Forum: When to ask for rerun from vendors
ngs-vendor
updated 11 months ago by 43k • written 4.7 years ago by ★ 1.9k
4
votes
4
replies
1.2k
views
Forum: What skills are required for an informatics scientist?
informatics scientist
updated 11 months ago by 43k • written 5.0 years ago by ★ 9.4k
4
votes
3
replies
816
views
Forum: How to get started in bioinformatics
students
updated 4 months ago by 43k • written 4 months ago by ▴ 10
4
votes
2
replies
405
views
Forum: bulk seq vs. sc-seq
scATAC-seq ATAC-seq scRNAseq RNAseq
updated 3 months ago by ★ 6.0k • written 3 months ago by ▴ 10
4
votes
5
replies
1.1k
views
Forum: A silly question about journal clubs
journal-club challenge
updated 11 months ago by 43k • written 4.2 years ago by ▴ 280
4
votes
5
replies
1.4k
views
7 follow
Forum: Career related query
MSc career
updated 11 months ago by 43k • written 5.4 years ago by ▴ 10
4
votes
6
replies
974
views
6 follow
Forum: Bioinformatics: what do you think of it in the next 20 years?
future
updated 5 months ago by 43k • written 5 months ago by • 0
361 results • Page 4 of 8
Recent Votes
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Recent Awards • All
Scholar to jv ★ 1.8k
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Recent Replies
Comment: constructing pangenome through psvcp by analyst ▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by GenoMax 142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R by 1769mkc ★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks by ATpoint 82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner by Joe 21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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